Wall clock time and date at job start Mon Mar 30 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 119.99880 * 2 1 4 4 H 1.48495 * 109.47218 * 91.03643 * 3 2 1 5 5 H 1.48504 * 109.46922 * 211.03395 * 3 2 1 6 6 H 1.48503 * 109.47601 * 331.03027 * 3 2 1 7 7 C 1.37877 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99693 * 358.34214 * 7 2 1 9 9 C 1.50696 * 120.00176 * 178.34084 * 7 2 1 10 10 C 1.50698 * 112.95824 * 72.46279 * 9 7 2 11 11 C 1.38247 * 119.97343 * 49.28717 * 10 9 7 12 12 C 1.38206 * 120.02571 * 179.76891 * 11 10 9 13 13 C 1.38452 * 119.97059 * 0.50502 * 12 11 10 14 14 F 1.35104 * 120.02260 * 179.76493 * 13 12 11 15 15 C 1.38460 * 119.95071 * 359.75190 * 13 12 11 16 16 C 1.38195 * 119.97515 * 359.97438 * 15 13 12 17 17 C 1.53934 * 113.76231 * 204.11397 * 9 7 2 18 18 C 1.53935 * 86.34154 * 90.59570 * 17 9 7 19 19 N 1.47960 * 113.75990 * 300.67576 * 9 7 2 20 20 H 0.96994 * 119.99871 * 359.97438 * 1 2 3 21 21 H 1.08004 * 119.98814 * 0.02562 * 11 10 9 22 22 H 1.07995 * 120.00899 * 180.25649 * 12 11 10 23 23 H 1.08006 * 120.00971 * 179.97438 * 15 13 12 24 24 H 1.08004 * 119.98425 * 179.97438 * 16 15 13 25 25 H 1.08996 * 113.73327 * 204.95544 * 17 9 7 26 26 H 1.09004 * 113.73238 * 336.12995 * 17 9 7 27 27 H 1.08998 * 113.75939 * 138.04411 * 18 17 9 28 28 H 1.09003 * 113.75418 * 269.40303 * 18 17 9 29 29 H 1.00906 * 111.00172 * 23.25658 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5186 2.0337 1.3998 5 1 3.5356 1.4465 -0.7218 6 1 1.4359 2.6589 -0.6781 7 6 2.0046 -1.1941 -0.0005 8 1 1.4649 -2.1292 0.0261 9 6 3.5111 -1.1944 -0.0383 10 6 4.1318 -0.7578 1.2636 11 6 3.7116 -1.3234 2.4531 12 6 4.2835 -0.9273 3.6473 13 6 5.2703 0.0438 3.6531 14 9 5.8267 0.4352 4.8203 15 6 5.6867 0.6133 2.4617 16 6 5.1173 0.2116 1.2682 17 6 4.1169 -2.4883 -0.6112 18 6 4.0577 -1.7920 -1.9828 19 7 4.0778 -0.5200 -1.2272 20 1 -0.4850 0.8400 0.0004 21 1 2.9389 -2.0780 2.4487 22 1 3.9578 -1.3722 4.5759 23 1 6.4561 1.3713 2.4651 24 1 5.4417 0.6561 0.3389 25 1 5.1306 -2.6891 -0.2645 26 1 3.4603 -3.3544 -0.5282 27 1 4.9446 -1.9529 -2.5956 28 1 3.1279 -1.9667 -2.5241 29 1 3.4215 0.1412 -1.6150 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260672627.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:28 Heat of formation + Delta-G solvation = 22.485342 kcal Electronic energy + Delta-G solvation = -15029.597307 eV Core-core repulsion = 12447.477268 eV Total energy + Delta-G solvation = -2582.120039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.42269 -39.46241 -37.33272 -32.51349 -30.53645 -30.26145 -26.74970 -26.50906 -23.37958 -22.21760 -21.22570 -18.63353 -17.20211 -16.92272 -16.00121 -15.54723 -15.13362 -15.04291 -14.01264 -13.68915 -13.25232 -12.95596 -12.73575 -12.33419 -12.19223 -11.88481 -11.16547 -11.01225 -10.67915 -10.41391 -10.25829 -10.09578 -9.91774 -9.28886 -8.77158 -8.47281 -7.91795 -7.74748 -6.31140 -4.38892 1.79595 1.86558 3.22461 3.31050 3.36925 4.22269 4.28325 4.80694 4.97991 5.08987 5.35447 5.38739 5.59622 5.76088 5.99716 6.01676 6.10516 6.25149 6.49796 6.53180 6.63266 6.70305 6.72026 6.78563 7.00285 7.02786 7.37174 7.47892 7.56153 8.10308 8.40484 8.70155 9.28743 10.79693 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027348 B = 0.012637 C = 0.010920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.606860 B = 2215.186244 C = 2563.603907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.085 3.915 3 Si 0.838 3.162 4 H -0.272 1.272 5 H -0.219 1.219 6 H -0.290 1.290 7 C -0.527 4.527 8 H 0.083 0.917 9 C 0.198 3.802 10 C -0.044 4.044 11 C -0.068 4.068 12 C -0.162 4.162 13 C 0.069 3.931 14 F -0.153 7.153 15 C -0.165 4.165 16 C -0.091 4.091 17 C -0.128 4.128 18 C 0.012 3.988 19 N -0.650 5.650 20 H 0.268 0.732 21 H 0.135 0.865 22 H 0.126 0.874 23 H 0.123 0.877 24 H 0.138 0.862 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.585 -1.039 1.734 8.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.120 4.120 3 Si 0.664 3.336 4 H -0.198 1.198 5 H -0.142 1.142 6 H -0.216 1.216 7 C -0.566 4.566 8 H 0.101 0.899 9 C 0.108 3.892 10 C -0.046 4.046 11 C -0.086 4.086 12 C -0.181 4.181 13 C 0.050 3.950 14 F -0.132 7.132 15 C -0.184 4.184 16 C -0.109 4.109 17 C -0.166 4.166 18 C -0.118 4.118 19 N -0.279 5.279 20 H 0.078 0.922 21 H 0.153 0.847 22 H 0.144 0.856 23 H 0.141 0.859 24 H 0.156 0.844 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.248 -0.716 1.927 9.474 hybrid contribution -0.699 0.950 0.193 1.195 sum 8.550 0.234 2.119 8.812 Atomic orbital electron populations 1.69876 1.06339 1.27495 1.48325 1.24913 0.94695 0.99108 0.93315 0.87633 0.82200 0.83564 0.80169 1.19769 1.14235 1.21621 1.20904 0.86995 0.95091 1.53583 0.89892 1.19362 0.93629 0.90474 0.85785 1.20312 0.93380 0.94581 0.96299 1.20882 0.97820 0.99461 0.90481 1.21052 0.98215 0.99258 0.99576 1.17667 0.97324 0.99011 0.81023 1.91419 1.84548 1.90328 1.46935 1.21053 1.02994 1.02576 0.91781 1.21119 0.95505 0.96978 0.97311 1.23285 0.99721 0.97433 0.96148 1.23271 0.99923 0.92971 0.95651 1.67399 1.47050 1.07642 1.05835 0.92228 0.84712 0.85603 0.85872 0.84424 0.91356 0.91744 0.91589 0.91796 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.96 55.43 0.77 -24.81 15 2 C 0.08 2.29 5.42 -17.82 -0.10 2.19 15 3 Si 0.84 19.99 24.07 -169.99 -4.09 15.90 15 4 H -0.27 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.22 -4.77 4.40 56.52 0.25 -4.52 15 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 15 7 C -0.53 -13.51 8.14 -34.44 -0.28 -13.79 15 8 H 0.08 2.31 8.06 -52.48 -0.42 1.89 15 9 C 0.20 4.30 0.60 -132.85 -0.08 4.22 15 10 C -0.04 -0.93 3.67 -104.62 -0.38 -1.31 15 11 C -0.07 -1.35 9.30 -39.59 -0.37 -1.71 15 12 C -0.16 -2.93 10.03 -39.51 -0.40 -3.32 15 13 C 0.07 1.26 7.30 -39.42 -0.29 0.97 15 14 F -0.15 -2.69 17.27 2.25 0.04 -2.66 15 15 C -0.17 -2.99 10.03 -39.52 -0.40 -3.38 15 16 C -0.09 -1.78 7.96 -39.60 -0.32 -2.10 15 17 C -0.13 -2.42 7.42 -25.80 -0.19 -2.61 15 18 C 0.01 0.22 8.63 -2.77 -0.02 0.20 15 19 N -0.65 -13.42 5.79 -105.93 -0.61 -14.03 15 20 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 21 H 0.14 2.62 7.85 -52.48 -0.41 2.21 15 22 H 0.13 1.94 8.06 -52.49 -0.42 1.52 15 23 H 0.12 1.90 8.06 -52.48 -0.42 1.48 15 24 H 0.14 2.65 6.88 -52.48 -0.36 2.29 15 25 H 0.07 1.20 8.09 -51.93 -0.42 0.78 15 26 H 0.06 1.20 8.09 -51.93 -0.42 0.78 15 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 29 H 0.32 6.91 5.10 -39.29 -0.20 6.71 15 LS Contribution 242.99 15.07 3.66 3.66 Total: -1.00 -27.77 242.99 -6.27 -34.03 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.22 Total: 8.57 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -2.82 Total: -20.66 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.16 Total: -38.84 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.04 Total: -2.66 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.09 Total: 15.90 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.77 -6.27 -34.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260672627.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.519 kcal (2) G-P(sol) polarization free energy of solvation -27.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds