Wall clock time and date at job start Mon Mar 30 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86795 * 119.99880 * 2 1 4 4 H 1.48495 * 109.47218 * 91.03643 * 3 2 1 5 5 H 1.48504 * 109.46922 * 211.03395 * 3 2 1 6 6 H 1.48503 * 109.47601 * 331.03027 * 3 2 1 7 7 C 1.37877 * 119.99975 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99693 * 358.34214 * 7 2 1 9 9 C 1.50696 * 120.00176 * 178.34084 * 7 2 1 10 10 C 1.50698 * 112.95824 * 72.46279 * 9 7 2 11 11 C 1.38247 * 119.97343 * 49.28717 * 10 9 7 12 12 C 1.38206 * 120.02571 * 179.76891 * 11 10 9 13 13 C 1.38452 * 119.97059 * 0.50502 * 12 11 10 14 14 F 1.35104 * 120.02260 * 179.76493 * 13 12 11 15 15 C 1.38460 * 119.95071 * 359.75190 * 13 12 11 16 16 C 1.38195 * 119.97515 * 359.97438 * 15 13 12 17 17 C 1.53934 * 113.76231 * 204.11397 * 9 7 2 18 18 C 1.53935 * 86.34154 * 90.59570 * 17 9 7 19 19 N 1.47960 * 113.75990 * 300.67576 * 9 7 2 20 20 H 0.96994 * 119.99871 * 359.97438 * 1 2 3 21 21 H 1.08004 * 119.98814 * 0.02562 * 11 10 9 22 22 H 1.07995 * 120.00899 * 180.25649 * 12 11 10 23 23 H 1.08006 * 120.00971 * 179.97438 * 15 13 12 24 24 H 1.08004 * 119.98425 * 179.97438 * 16 15 13 25 25 H 1.08996 * 113.73327 * 204.95544 * 17 9 7 26 26 H 1.09004 * 113.73238 * 336.12995 * 17 9 7 27 27 H 1.08998 * 113.75939 * 138.04411 * 18 17 9 28 28 H 1.09003 * 113.75418 * 269.40303 * 18 17 9 29 29 H 1.00906 * 111.00172 * 23.25658 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5186 2.0337 1.3998 5 1 3.5356 1.4465 -0.7218 6 1 1.4359 2.6589 -0.6781 7 6 2.0046 -1.1941 -0.0005 8 1 1.4649 -2.1292 0.0261 9 6 3.5111 -1.1944 -0.0383 10 6 4.1318 -0.7578 1.2636 11 6 3.7116 -1.3234 2.4531 12 6 4.2835 -0.9273 3.6473 13 6 5.2703 0.0438 3.6531 14 9 5.8267 0.4352 4.8203 15 6 5.6867 0.6133 2.4617 16 6 5.1173 0.2116 1.2682 17 6 4.1169 -2.4883 -0.6112 18 6 4.0577 -1.7920 -1.9828 19 7 4.0778 -0.5200 -1.2272 20 1 -0.4850 0.8400 0.0004 21 1 2.9389 -2.0780 2.4487 22 1 3.9578 -1.3722 4.5759 23 1 6.4561 1.3713 2.4651 24 1 5.4417 0.6561 0.3389 25 1 5.1306 -2.6891 -0.2645 26 1 3.4603 -3.3544 -0.5282 27 1 4.9446 -1.9529 -2.5956 28 1 3.1279 -1.9667 -2.5241 29 1 3.4215 0.1412 -1.6150 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260672627.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:28 Heat of formation + Delta-G solvation = 4.924864 kcal Electronic energy + Delta-G solvation = -15030.358786 eV Core-core repulsion = 12447.477268 eV Total energy + Delta-G solvation = -2582.881518 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.82146 -41.04951 -38.84529 -34.55056 -32.01038 -31.78885 -28.42028 -28.27650 -25.07179 -23.69878 -22.70778 -20.36688 -18.81909 -18.54972 -17.70895 -17.01767 -16.72324 -16.51252 -15.69943 -15.27198 -15.02677 -14.54668 -14.26181 -13.88307 -13.78155 -13.51434 -12.92137 -12.63378 -12.37253 -12.15484 -11.93650 -11.77092 -11.54940 -11.02784 -10.76780 -9.92982 -9.59369 -9.28141 -8.39722 -6.48846 0.30758 0.40333 1.31208 1.38118 1.45611 2.27609 2.75014 2.97255 3.36959 3.49478 3.94597 4.00401 4.06479 4.20353 4.49231 4.57518 4.60963 4.79766 5.01850 5.04937 5.11155 5.13323 5.23706 5.25882 5.37923 5.43989 5.66452 5.87276 6.08055 6.19609 6.51483 6.68032 7.21522 8.74586 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027348 B = 0.012637 C = 0.010920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.606860 B = 2215.186244 C = 2563.603907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.036 3.964 3 Si 0.891 3.109 4 H -0.285 1.285 5 H -0.185 1.185 6 H -0.297 1.297 7 C -0.515 4.515 8 H 0.046 0.954 9 C 0.189 3.811 10 C -0.063 4.063 11 C -0.085 4.085 12 C -0.158 4.158 13 C 0.065 3.935 14 F -0.148 7.148 15 C -0.159 4.159 16 C -0.097 4.097 17 C -0.122 4.122 18 C 0.016 3.984 19 N -0.645 5.645 20 H 0.266 0.734 21 H 0.127 0.873 22 H 0.150 0.850 23 H 0.153 0.847 24 H 0.144 0.856 25 H 0.087 0.913 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.034 -0.471 1.864 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.164 4.164 3 Si 0.717 3.283 4 H -0.212 1.212 5 H -0.108 1.108 6 H -0.224 1.224 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.098 3.902 10 C -0.065 4.065 11 C -0.103 4.103 12 C -0.176 4.176 13 C 0.046 3.954 14 F -0.126 7.126 15 C -0.178 4.178 16 C -0.115 4.115 17 C -0.160 4.160 18 C -0.113 4.113 19 N -0.273 5.273 20 H 0.075 0.925 21 H 0.145 0.855 22 H 0.167 0.833 23 H 0.171 0.829 24 H 0.161 0.839 25 H 0.105 0.895 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.729 -0.168 2.046 11.908 hybrid contribution -1.451 0.664 0.208 1.609 sum 10.279 0.496 2.254 10.535 Atomic orbital electron populations 1.70009 1.08072 1.28084 1.51117 1.25593 0.95124 1.02264 0.93445 0.86820 0.82455 0.79576 0.79470 1.21168 1.10770 1.22377 1.21061 0.89466 0.93327 1.51531 0.93584 1.19258 0.91216 0.92742 0.87009 1.20257 0.94624 0.95792 0.95794 1.20911 0.98297 0.99961 0.91157 1.21263 0.97627 0.98875 0.99882 1.17780 0.97235 0.98905 0.81434 1.91439 1.84386 1.90215 1.46594 1.21338 1.02959 1.02527 0.90975 1.21175 0.95466 0.96677 0.98218 1.23277 1.00381 0.96176 0.96128 1.23363 1.01013 0.91326 0.95634 1.67419 1.45955 1.08297 1.05647 0.92462 0.85549 0.83256 0.82948 0.83857 0.89459 0.92132 0.88278 0.92739 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.69 13.96 21.45 0.30 -55.39 15 2 C 0.04 1.97 5.42 84.65 0.46 2.42 15 3 Si 0.89 41.29 24.07 68.60 1.65 42.94 15 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 15 5 H -0.19 -7.52 4.40 99.48 0.44 -7.08 15 6 H -0.30 -13.96 7.11 99.48 0.71 -13.26 15 7 C -0.51 -26.79 8.14 25.60 0.21 -26.58 15 8 H 0.05 2.68 8.06 -2.91 -0.02 2.65 15 9 C 0.19 7.97 0.60 2.14 0.00 7.97 15 10 C -0.06 -2.54 3.67 -19.86 -0.07 -2.61 15 11 C -0.08 -3.26 9.30 22.26 0.21 -3.06 15 12 C -0.16 -5.35 10.03 22.31 0.22 -5.13 15 13 C 0.07 2.20 7.30 22.37 0.16 2.36 15 14 F -0.15 -4.70 17.27 44.97 0.78 -3.92 15 15 C -0.16 -5.20 10.03 22.31 0.22 -4.97 15 16 C -0.10 -3.53 7.96 22.26 0.18 -3.35 15 17 C -0.12 -4.39 7.42 31.24 0.23 -4.16 15 18 C 0.02 0.56 8.63 86.41 0.75 1.31 15 19 N -0.64 -25.07 5.79 -489.05 -2.83 -27.90 15 20 H 0.27 15.11 8.31 -92.71 -0.77 14.34 15 21 H 0.13 4.97 7.85 -2.91 -0.02 4.95 15 22 H 0.15 4.24 8.06 -2.91 -0.02 4.22 15 23 H 0.15 4.02 8.06 -2.91 -0.02 4.00 15 24 H 0.14 5.00 6.88 -2.91 -0.02 4.98 15 25 H 0.09 2.83 8.09 -2.39 -0.02 2.81 15 26 H 0.06 2.20 8.09 -2.39 -0.02 2.19 15 27 H 0.10 2.78 8.14 -2.39 -0.02 2.76 15 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 29 H 0.31 12.79 5.10 -89.69 -0.46 12.33 15 Total: -1.00 -59.19 242.99 2.90 -56.29 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.43 Total: 23.77 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 2.57 Total: -35.79 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -2.53 Total: -83.29 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.78 Total: -3.92 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.65 Total: 42.94 kcal Total: -59.19 2.90 -56.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260672627.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.219 kcal (2) G-P(sol) polarization free energy of solvation -59.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds