Wall clock time and date at job start Mon Mar 30 2020 03:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86798 * 119.99657 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00126 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99685 * 3 2 1 7 7 C 1.40059 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99562 * 179.97438 * 7 2 1 9 9 C 1.41579 * 119.99815 * 0.02562 * 7 2 1 10 10 N 1.33452 * 119.25202 * 0.02562 * 9 7 2 11 11 C 1.32500 * 120.49019 * 180.11534 * 10 9 7 12 12 N 1.38523 * 120.46559 * 179.87824 * 11 10 9 13 13 C 1.40292 * 119.07273 * 359.89124 * 11 10 9 14 14 C 1.38097 * 118.72689 * 359.96873 * 13 11 10 15 15 N 1.32351 * 119.28826 * 359.89234 * 14 13 11 16 16 C 1.50605 * 121.29775 * 180.29239 * 14 13 11 17 17 C 1.53026 * 109.66699 * 343.00295 * 16 14 13 18 18 O 1.43194 * 108.60043 * 49.18878 * 17 16 14 19 19 C 1.42812 * 113.21311 * 289.37688 * 18 17 16 20 20 H 0.96996 * 120.00343 * 0.02562 * 1 2 3 21 21 H 0.96989 * 120.00042 * 359.97438 * 12 11 10 22 22 H 0.96999 * 119.99869 * 180.02562 * 12 11 10 23 23 H 1.09002 * 109.43751 * 222.94668 * 16 14 13 24 24 H 1.09000 * 109.44516 * 103.07137 * 16 14 13 25 25 H 1.08998 * 109.61939 * 289.44938 * 17 16 14 26 26 H 1.09000 * 109.75960 * 169.00651 * 17 16 14 27 27 H 1.08990 * 109.36294 * 291.34284 * 19 18 17 28 28 H 1.08997 * 109.36080 * 171.74558 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 1.2759 2.7464 -0.0006 5 1 3.0946 1.6965 1.2124 6 1 3.0946 1.6963 -1.2125 7 6 2.0072 -1.2130 0.0005 8 1 3.0872 -1.2129 0.0001 9 6 1.2993 -2.4390 0.0005 10 7 -0.0351 -2.4216 -0.0005 11 6 -0.7223 -3.5544 0.0018 12 7 -2.1074 -3.5357 0.0032 13 6 -0.0275 -4.7732 0.0030 14 6 1.3533 -4.7501 0.0011 15 7 1.9813 -3.5851 -0.0040 16 6 2.1571 -6.0237 -0.0044 17 6 1.2672 -7.1961 0.4142 18 8 0.0592 -7.1493 -0.3532 19 6 -0.7969 -6.0655 0.0101 20 1 -0.4850 0.8400 -0.0004 21 1 -2.5810 -2.6893 0.0030 22 1 -2.6037 -4.3691 0.0053 23 1 2.9880 -5.9312 0.6951 24 1 2.5459 -6.2031 -1.0067 25 1 1.0302 -7.1152 1.4750 26 1 1.7843 -8.1369 0.2256 27 1 -1.1987 -6.2412 1.0079 28 1 -1.6194 -6.0003 -0.7022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260676957.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:29 Heat of formation + Delta-G solvation = -27.208913 kcal Electronic energy + Delta-G solvation = -14905.603490 eV Core-core repulsion = 12341.248509 eV Total energy + Delta-G solvation = -2564.354982 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.33503 -38.97745 -36.40489 -35.56190 -33.43447 -31.62282 -31.13245 -29.05373 -25.51540 -25.18183 -22.82044 -21.85240 -19.54766 -18.64068 -17.66263 -17.22600 -16.72728 -16.24116 -16.10339 -15.48912 -15.17268 -14.86473 -14.38058 -13.94754 -13.51255 -13.09479 -12.94558 -12.70421 -12.56615 -12.18138 -11.95880 -11.86343 -11.20733 -11.10122 -10.32698 -9.89272 -9.26893 -8.85901 -8.38214 -6.71918 0.79674 1.22472 1.40197 1.53540 1.54812 2.21684 2.77764 2.94061 3.04936 3.72851 3.90187 4.08936 4.28595 4.38374 4.47127 4.52617 4.61693 4.81668 4.86463 4.90842 5.02916 5.21503 5.42486 5.76215 6.11830 6.22451 6.36175 6.64019 6.78297 6.93245 7.45288 8.32439 8.46620 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.046585 B = 0.008794 C = 0.007478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.908940 B = 3183.077215 C = 3743.664302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.026 3.974 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.260 1.260 7 C -0.444 4.444 8 H 0.086 0.914 9 C 0.395 3.605 10 N -0.589 5.589 11 C 0.426 3.574 12 N -0.834 5.834 13 C -0.425 4.425 14 C 0.194 3.806 15 N -0.651 5.651 16 C -0.095 4.095 17 C 0.070 3.930 18 O -0.392 6.392 19 C 0.150 3.850 20 H 0.282 0.718 21 H 0.401 0.599 22 H 0.411 0.589 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.057 0.943 26 H 0.133 0.867 27 H 0.055 0.945 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -6.762 1.260 7.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.197 4.197 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.184 1.184 7 C -0.479 4.479 8 H 0.104 0.896 9 C 0.155 3.845 10 N -0.318 5.318 11 C 0.175 3.825 12 N -0.381 5.381 13 C -0.439 4.439 14 C 0.045 3.955 15 N -0.375 5.375 16 C -0.133 4.133 17 C -0.007 4.007 18 O -0.310 6.310 19 C 0.073 3.927 20 H 0.093 0.907 21 H 0.230 0.770 22 H 0.243 0.757 23 H 0.111 0.889 24 H 0.103 0.897 25 H 0.076 0.924 26 H 0.150 0.850 27 H 0.073 0.927 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.114 -5.879 1.105 6.345 hybrid contribution -0.479 0.361 0.135 0.615 sum -2.594 -5.518 1.240 6.222 Atomic orbital electron populations 1.70201 1.08797 1.29397 1.28246 1.27011 0.95927 1.04414 0.92375 0.85026 0.78498 0.74606 0.80071 1.18572 1.18317 1.18436 1.19617 0.94669 0.88933 1.44693 0.89573 1.20036 0.85426 0.91636 0.87408 1.68927 1.08676 1.25834 1.28334 1.18968 0.87061 0.89645 0.86858 1.41836 1.01300 1.11455 1.83551 1.20729 0.95822 0.96313 1.31010 1.21178 0.90979 0.94363 0.88999 1.68629 1.41120 0.98484 1.29276 1.21001 0.98344 0.90397 1.03535 1.22720 0.84649 0.98205 0.95087 1.87924 1.32143 1.48511 1.62449 1.20698 0.90960 0.81535 0.99552 0.90743 0.76971 0.75689 0.88943 0.89699 0.92442 0.84966 0.92723 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.97 11.42 21.84 0.25 -39.72 15 2 C 0.03 1.36 5.50 85.30 0.47 1.83 15 3 Si 1.00 38.78 29.56 68.60 2.03 40.80 15 4 H -0.26 -9.37 7.11 99.48 0.71 -8.67 15 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 15 7 C -0.44 -25.78 9.37 23.54 0.22 -25.56 15 8 H 0.09 4.85 7.85 -2.91 -0.02 4.83 15 9 C 0.39 23.77 7.37 135.18 1.00 24.77 15 10 N -0.59 -33.83 7.91 -191.43 -1.51 -35.35 15 11 C 0.43 20.68 7.80 133.48 1.04 21.73 15 12 N -0.83 -30.53 8.98 -54.94 -0.49 -31.02 15 13 C -0.43 -19.20 5.85 -19.49 -0.11 -19.31 15 14 C 0.19 9.34 6.68 42.42 0.28 9.63 15 15 N -0.65 -36.83 10.27 -182.63 -1.87 -38.71 15 16 C -0.09 -3.40 6.27 29.83 0.19 -3.21 15 17 C 0.07 2.00 6.84 71.99 0.49 2.49 15 18 O -0.39 -13.00 10.80 -148.98 -1.61 -14.60 15 19 C 0.15 5.13 5.90 71.14 0.42 5.55 15 20 H 0.28 13.49 8.29 -92.71 -0.77 12.72 15 21 H 0.40 14.36 8.95 -92.72 -0.83 13.53 15 22 H 0.41 11.57 7.17 -92.71 -0.66 10.91 15 23 H 0.09 3.11 8.14 -2.39 -0.02 3.09 15 24 H 0.08 2.96 8.14 -2.39 -0.02 2.94 15 25 H 0.06 1.56 8.07 -2.39 -0.02 1.54 15 26 H 0.13 2.70 8.14 -2.39 -0.02 2.68 15 27 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 28 H 0.09 2.82 7.31 -2.39 -0.02 2.80 15 Total: -1.00 -71.36 242.05 0.50 -70.86 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -0.28 Total: 29.84 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 4.00 Total: 17.90 kcal Atomic # 7 Polarization: -141.16 SS G_CDS: -3.63 Total: -144.80 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -1.61 Total: -14.60 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.80 kcal Total: -71.36 0.50 -70.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676957.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.653 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds