Wall clock time and date at job start Mon Mar 30 2020 02:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35939 * 117.00621 * 2 1 4 4 C 1.39360 * 119.85624 * 0.24527 * 3 2 1 5 5 C 1.37845 * 120.40509 * 180.25771 * 4 3 2 6 6 C 1.39029 * 120.11670 * 359.49515 * 5 4 3 7 7 N 1.38754 * 120.14303 * 180.23250 * 6 5 4 8 8 C 1.40783 * 119.71603 * 0.25673 * 6 5 4 9 9 C 1.47395 * 120.19695 * 180.02562 * 8 6 5 10 10 O 1.21872 * 120.00133 * 5.76011 * 9 8 6 11 11 C 1.41647 * 119.99628 * 185.76939 * 9 8 6 12 12 H 1.08004 * 120.00427 * 359.97438 * 11 9 8 13 13 C 1.40351 * 119.99961 * 179.97438 * 11 9 8 14 14 N 1.30529 * 119.99584 * 359.97438 * 13 11 9 15 15 Si 1.86793 * 119.99920 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47264 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47124 * 120.00241 * 15 13 11 18 18 H 1.48501 * 109.47144 * 239.99886 * 15 13 11 19 19 C 1.38091 * 119.86329 * 180.02562 * 3 2 1 20 20 H 1.09009 * 109.46945 * 59.99926 * 1 2 3 21 21 H 1.08995 * 109.47811 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46991 * 300.00278 * 1 2 3 23 23 H 1.07997 * 119.79897 * 0.02562 * 4 3 2 24 24 H 1.08005 * 119.94377 * 179.77271 * 5 4 3 25 25 H 0.97004 * 120.00050 * 354.57904 * 7 6 5 26 26 H 0.97003 * 120.00128 * 174.58821 * 7 6 5 27 27 H 0.97006 * 119.99483 * 180.02562 * 14 13 11 28 28 H 1.08000 * 120.06228 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2844 2.3781 0.0052 5 6 1.8985 3.6122 -0.0001 6 6 3.2860 3.7010 -0.0001 7 7 3.9047 4.9429 -0.0005 8 6 4.0605 2.5253 -0.0001 9 6 5.5322 2.6071 0.0005 10 8 6.0823 3.6893 0.1069 11 6 6.3070 1.4277 -0.1228 12 1 5.8195 0.4686 -0.2169 13 6 7.7084 1.5056 -0.1228 14 7 8.2975 2.6648 -0.0096 15 14 8.7301 -0.0497 -0.2847 16 1 7.8289 -1.2246 -0.3971 17 1 9.5803 0.0407 -1.4990 18 1 9.5936 -0.2017 0.9138 19 6 3.4254 1.2800 -0.0005 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2063 2.3152 0.0096 24 1 1.3009 4.5118 0.0002 25 1 3.3725 5.7499 -0.0802 26 1 4.8696 5.0041 0.0787 27 1 9.2661 2.7186 -0.0100 28 1 4.0124 0.3734 -0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260728301.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:38 Heat of formation + Delta-G solvation = -52.342672 kcal Electronic energy + Delta-G solvation = -14546.838166 eV Core-core repulsion = 11949.100552 eV Total energy + Delta-G solvation = -2597.737614 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.41985 -37.69654 -35.77170 -33.23382 -32.51479 -30.51742 -28.18817 -26.53103 -26.17190 -22.73583 -21.35798 -19.70435 -17.38324 -16.41081 -16.10613 -15.94334 -15.21906 -15.11022 -14.55935 -13.54733 -13.25129 -13.06115 -12.77445 -12.16316 -12.00726 -11.74753 -11.65322 -11.31376 -11.13276 -10.87338 -10.44115 -10.35391 -10.09565 -9.18396 -9.01973 -8.07427 -7.50184 -6.37236 -6.34321 -4.92777 1.89127 2.42341 3.03927 3.13648 3.19184 3.88138 4.00557 4.10177 4.70587 4.93317 5.29791 5.40187 5.47173 5.53963 5.67047 5.78069 5.99443 6.20191 6.47469 6.72041 6.85263 7.03146 7.12192 7.22083 7.50665 8.02687 8.05516 8.46043 8.65033 8.76743 9.06436 10.26291 10.48560 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.009224 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.595796 B = 3034.771742 C = 3958.195797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.325 6.325 3 C 0.036 3.964 4 C -0.157 4.157 5 C -0.196 4.196 6 C 0.222 3.778 7 N -0.864 5.864 8 C -0.156 4.156 9 C 0.399 3.601 10 O -0.549 6.549 11 C -0.510 4.510 12 H 0.078 0.922 13 C 0.080 3.920 14 N -0.733 5.733 15 Si 0.907 3.093 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.273 1.273 19 C -0.069 4.069 20 H 0.046 0.954 21 H 0.089 0.911 22 H 0.046 0.954 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.376 0.624 26 H 0.418 0.582 27 H 0.274 0.726 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.139 -2.207 -0.278 10.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.240 6.240 3 C -0.009 4.009 4 C -0.177 4.177 5 C -0.220 4.220 6 C 0.113 3.887 7 N -0.416 5.416 8 C -0.162 4.162 9 C 0.298 3.702 10 O -0.440 6.440 11 C -0.541 4.541 12 H 0.096 0.904 13 C -0.144 4.144 14 N -0.362 5.362 15 Si 0.731 3.269 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.198 1.198 19 C -0.089 4.089 20 H 0.065 0.935 21 H 0.107 0.893 22 H 0.065 0.935 23 H 0.132 0.868 24 H 0.130 0.870 25 H 0.202 0.798 26 H 0.264 0.736 27 H 0.085 0.915 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.567 -1.792 -0.207 9.736 hybrid contribution 0.062 -0.335 -0.105 0.356 sum -9.505 -2.127 -0.311 9.745 Atomic orbital electron populations 1.22837 0.80181 1.02665 1.00537 1.86019 1.19824 1.27561 1.90551 1.18719 0.92232 0.83481 1.06492 1.20835 0.98527 0.92044 1.06253 1.20253 0.92577 0.96925 1.12212 1.18096 0.90848 0.86711 0.93024 1.43468 1.13373 1.03146 1.81598 1.21093 0.98690 0.90166 1.06268 1.17868 0.83605 0.90063 0.78646 1.90105 1.71836 1.30476 1.51618 1.20947 0.91490 0.95718 1.45942 0.90431 1.26027 0.98705 0.97026 0.92627 1.69959 1.10487 1.25168 1.30564 0.86305 0.79848 0.82245 0.78532 1.18194 1.19841 1.19835 1.20555 0.90334 0.98330 0.99663 0.93518 0.89275 0.93515 0.86763 0.86992 0.79835 0.73609 0.91548 0.84752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 15 2 O -0.32 -5.71 10.49 -19.55 -0.21 -5.92 15 3 C 0.04 0.70 6.68 -39.22 -0.26 0.44 15 4 C -0.16 -2.77 9.03 -39.31 -0.35 -3.12 15 5 C -0.20 -3.62 9.88 -39.43 -0.39 -4.00 15 6 C 0.22 4.84 6.78 -83.47 -0.57 4.28 15 7 N -0.86 -17.69 8.93 32.62 0.29 -17.40 15 8 C -0.16 -3.81 5.90 -104.63 -0.62 -4.43 15 9 C 0.40 11.22 6.89 -34.56 -0.24 10.98 15 10 O -0.55 -16.48 12.19 5.03 0.06 -16.42 15 11 C -0.51 -14.05 8.84 -37.49 -0.33 -14.38 15 12 H 0.08 1.98 6.06 -52.48 -0.32 1.67 15 13 C 0.08 2.12 5.50 -17.31 -0.10 2.03 15 14 N -0.73 -20.64 11.73 55.57 0.65 -19.98 15 15 Si 0.91 19.26 29.56 -169.99 -5.03 14.23 15 16 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 19 C -0.07 -1.54 9.35 -39.05 -0.37 -1.91 15 20 H 0.05 0.52 7.66 -51.92 -0.40 0.12 15 21 H 0.09 0.85 8.14 -51.93 -0.42 0.43 15 22 H 0.05 0.52 7.64 -51.93 -0.40 0.12 15 23 H 0.11 1.62 6.27 -52.49 -0.33 1.30 15 24 H 0.11 1.72 8.06 -52.48 -0.42 1.30 15 25 H 0.38 6.15 8.84 -40.82 -0.36 5.79 15 26 H 0.42 9.77 5.34 -40.93 -0.22 9.55 15 27 H 0.27 6.89 8.29 -40.82 -0.34 6.55 15 28 H 0.13 2.95 6.24 -52.49 -0.33 2.63 15 LS Contribution 245.40 15.07 3.70 3.70 Total: -1.00 -31.47 245.40 -5.08 -36.55 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -2.33 Total: 13.96 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -2.23 Total: -8.72 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.94 Total: -37.39 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.14 Total: -22.34 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.47 -5.08 -36.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260728301.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.794 kcal (2) G-P(sol) polarization free energy of solvation -31.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds