Wall clock time and date at job start Mon Mar 30 2020 02:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35939 * 117.00621 * 2 1 4 4 C 1.39360 * 119.85624 * 0.24527 * 3 2 1 5 5 C 1.37845 * 120.40509 * 180.25771 * 4 3 2 6 6 C 1.39029 * 120.11670 * 359.49515 * 5 4 3 7 7 N 1.38754 * 120.14303 * 180.23250 * 6 5 4 8 8 C 1.40783 * 119.71603 * 0.25673 * 6 5 4 9 9 C 1.47395 * 120.19695 * 180.02562 * 8 6 5 10 10 O 1.21872 * 120.00133 * 5.76011 * 9 8 6 11 11 C 1.41647 * 119.99628 * 185.76939 * 9 8 6 12 12 H 1.08004 * 120.00427 * 359.97438 * 11 9 8 13 13 C 1.40351 * 119.99961 * 179.97438 * 11 9 8 14 14 N 1.30529 * 119.99584 * 359.97438 * 13 11 9 15 15 Si 1.86793 * 119.99920 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47264 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47124 * 120.00241 * 15 13 11 18 18 H 1.48501 * 109.47144 * 239.99886 * 15 13 11 19 19 C 1.38091 * 119.86329 * 180.02562 * 3 2 1 20 20 H 1.09009 * 109.46945 * 59.99926 * 1 2 3 21 21 H 1.08995 * 109.47811 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46991 * 300.00278 * 1 2 3 23 23 H 1.07997 * 119.79897 * 0.02562 * 4 3 2 24 24 H 1.08005 * 119.94377 * 179.77271 * 5 4 3 25 25 H 0.97004 * 120.00050 * 354.57904 * 7 6 5 26 26 H 0.97003 * 120.00128 * 174.58821 * 7 6 5 27 27 H 0.97006 * 119.99483 * 180.02562 * 14 13 11 28 28 H 1.08000 * 120.06228 * 0.02562 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2844 2.3781 0.0052 5 6 1.8985 3.6122 -0.0001 6 6 3.2860 3.7010 -0.0001 7 7 3.9047 4.9429 -0.0005 8 6 4.0605 2.5253 -0.0001 9 6 5.5322 2.6071 0.0005 10 8 6.0823 3.6893 0.1069 11 6 6.3070 1.4277 -0.1228 12 1 5.8195 0.4686 -0.2169 13 6 7.7084 1.5056 -0.1228 14 7 8.2975 2.6648 -0.0096 15 14 8.7301 -0.0497 -0.2847 16 1 7.8289 -1.2246 -0.3971 17 1 9.5803 0.0407 -1.4990 18 1 9.5936 -0.2017 0.9138 19 6 3.4254 1.2800 -0.0005 20 1 -0.3633 0.5139 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 0.2063 2.3152 0.0096 24 1 1.3009 4.5118 0.0002 25 1 3.3725 5.7499 -0.0802 26 1 4.8696 5.0041 0.0787 27 1 9.2661 2.7186 -0.0100 28 1 4.0124 0.3734 -0.0014 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260728301.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:38 Heat of formation + Delta-G solvation = -74.987104 kcal Electronic energy + Delta-G solvation = -14547.820102 eV Core-core repulsion = 11949.100552 eV Total energy + Delta-G solvation = -2598.719551 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.92887 -39.33460 -37.58384 -34.99629 -34.37760 -32.16226 -29.65400 -28.44567 -27.42465 -24.42465 -23.01203 -21.41922 -18.95232 -18.34245 -17.66108 -17.52190 -16.90469 -16.40870 -16.01690 -15.20905 -15.02082 -14.66359 -14.55920 -13.79889 -13.50028 -13.36841 -13.25775 -12.84795 -12.73577 -12.33435 -12.28664 -12.02462 -11.66730 -11.00261 -10.63269 -9.72714 -9.55391 -8.34106 -7.96100 -7.04036 0.25902 0.84964 1.36196 1.38177 1.55845 2.21612 2.23874 2.64271 2.95579 3.37664 3.75107 4.01463 4.08329 4.37652 4.49388 4.53518 4.66443 4.81072 4.85620 5.16034 5.23515 5.31557 5.49263 5.51409 5.90549 5.97636 6.62916 6.71295 6.72445 6.91107 7.34321 8.24389 8.47871 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.029730 B = 0.009224 C = 0.007072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.595796 B = 3034.771742 C = 3958.195797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.039 3.961 4 C -0.139 4.139 5 C -0.182 4.182 6 C 0.203 3.797 7 N -0.865 5.865 8 C -0.201 4.201 9 C 0.377 3.623 10 O -0.584 6.584 11 C -0.543 4.543 12 H 0.086 0.914 13 C 0.028 3.972 14 N -0.781 5.781 15 Si 0.991 3.009 16 H -0.250 1.250 17 H -0.263 1.263 18 H -0.263 1.263 19 C -0.087 4.087 20 H 0.062 0.938 21 H 0.115 0.885 22 H 0.062 0.938 23 H 0.161 0.839 24 H 0.152 0.848 25 H 0.395 0.605 26 H 0.405 0.595 27 H 0.282 0.718 28 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.500 -3.265 -0.424 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C -0.007 4.007 4 C -0.158 4.158 5 C -0.205 4.205 6 C 0.094 3.906 7 N -0.416 5.416 8 C -0.207 4.207 9 C 0.279 3.721 10 O -0.478 6.478 11 C -0.574 4.574 12 H 0.104 0.896 13 C -0.192 4.192 14 N -0.409 5.409 15 Si 0.810 3.190 16 H -0.173 1.173 17 H -0.187 1.187 18 H -0.187 1.187 19 C -0.106 4.106 20 H 0.081 0.919 21 H 0.134 0.866 22 H 0.080 0.920 23 H 0.178 0.822 24 H 0.169 0.831 25 H 0.224 0.776 26 H 0.247 0.753 27 H 0.093 0.907 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.990 -2.844 -0.355 12.327 hybrid contribution 0.582 -0.001 -0.052 0.585 sum -11.407 -2.845 -0.407 11.764 Atomic orbital electron populations 1.23261 0.77049 1.05125 1.01964 1.86004 1.23003 1.26568 1.90269 1.18704 0.91428 0.85132 1.05389 1.21325 1.00678 0.90694 1.03095 1.20675 0.91103 0.98975 1.09755 1.18347 0.92347 0.86177 0.93701 1.43329 1.12849 1.03865 1.81562 1.20785 0.97038 0.92342 1.10532 1.18459 0.85968 0.89845 0.77867 1.90064 1.73388 1.31322 1.53055 1.21382 0.92786 0.96215 1.46990 0.89633 1.27161 0.99682 1.00971 0.91354 1.70064 1.11390 1.27986 1.31484 0.85058 0.77761 0.77122 0.79048 1.17346 1.18712 1.18718 1.20450 0.92053 0.97097 1.01026 0.91945 0.86648 0.91952 0.82173 0.83059 0.77603 0.75269 0.90711 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.81 113.37 1.11 1.52 15 2 O -0.34 -11.21 10.49 -92.86 -0.97 -12.19 15 3 C 0.04 1.46 6.68 22.50 0.15 1.61 15 4 C -0.14 -4.33 9.03 22.45 0.20 -4.13 15 5 C -0.18 -6.13 9.88 22.37 0.22 -5.91 15 6 C 0.20 8.81 6.78 38.86 0.26 9.08 15 7 N -0.86 -35.78 8.93 -50.70 -0.45 -36.23 15 8 C -0.20 -10.13 5.90 -19.87 -0.12 -10.25 15 9 C 0.38 22.36 6.89 25.52 0.18 22.54 15 10 O -0.58 -37.11 12.19 -4.90 -0.06 -37.17 15 11 C -0.54 -31.32 8.84 23.63 0.21 -31.11 15 12 H 0.09 4.59 6.06 -2.91 -0.02 4.57 15 13 C 0.03 1.52 5.50 85.40 0.47 1.99 15 14 N -0.78 -45.68 11.73 21.89 0.26 -45.42 15 15 Si 0.99 40.22 29.56 68.60 2.03 42.25 15 16 H -0.25 -9.70 7.11 99.48 0.71 -8.99 15 17 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 15 19 C -0.09 -3.93 9.35 22.61 0.21 -3.72 15 20 H 0.06 1.08 7.66 -2.38 -0.02 1.06 15 21 H 0.12 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.06 1.08 7.64 -2.39 -0.02 1.06 15 23 H 0.16 3.54 6.27 -2.91 -0.02 3.52 15 24 H 0.15 3.89 8.06 -2.91 -0.02 3.87 15 25 H 0.40 12.61 8.84 -92.71 -0.82 11.79 15 26 H 0.41 19.75 5.34 -94.50 -0.50 19.25 15 27 H 0.28 14.71 8.29 -92.70 -0.77 13.94 15 28 H 0.12 5.58 6.24 -2.91 -0.02 5.56 15 Total: -1.00 -72.25 245.40 3.59 -68.66 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -0.10 Total: 38.48 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 2.90 Total: -18.38 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -0.20 Total: -81.65 kcal Atomic # 8 Polarization: -48.32 SS G_CDS: -1.03 Total: -49.36 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -72.25 3.59 -68.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260728301.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.323 kcal (2) G-P(sol) polarization free energy of solvation -72.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds