Wall clock time and date at job start Mon Mar 30 2020 02:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99414 * 2 1 4 4 H 1.48498 * 109.47288 * 269.99955 * 3 2 1 5 5 H 1.48496 * 109.47382 * 30.00481 * 3 2 1 6 6 H 1.48500 * 109.46955 * 150.00065 * 3 2 1 7 7 C 1.37871 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99763 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00523 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.62760 * 299.60887 * 9 7 2 11 11 C 1.52886 * 109.63330 * 179.01127 * 9 7 2 12 12 C 1.50726 * 109.96455 * 189.90814 * 11 9 7 13 13 C 1.38700 * 118.46816 * 196.75646 * 12 11 9 14 14 C 1.37983 * 120.39155 * 180.26328 * 13 12 11 15 15 C 1.38488 * 119.80191 * 359.69897 * 14 13 12 16 16 F 1.35104 * 120.09678 * 180.19880 * 15 14 13 17 17 C 1.38237 * 119.81147 * 0.46918 * 15 14 13 18 18 C 1.37847 * 121.65254 * 16.87696 * 12 11 9 19 19 C 1.50637 * 121.84753 * 359.57352 * 18 12 11 20 20 N 1.46633 * 110.49094 * 17.53432 * 19 18 12 21 21 H 0.96997 * 120.00192 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.39113 * 310.05522 * 11 9 7 23 23 H 1.09002 * 109.38760 * 69.86235 * 11 9 7 24 24 H 1.08001 * 119.80266 * 0.24226 * 13 12 11 25 25 H 1.07994 * 120.10366 * 179.97438 * 14 13 12 26 26 H 1.08002 * 119.82525 * 179.79935 * 17 15 14 27 27 H 1.09004 * 109.30050 * 137.84985 * 19 18 12 28 28 H 1.08998 * 109.29846 * 257.42770 * 19 18 12 29 29 H 1.00901 * 110.99885 * 70.87144 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2513 -2.4992 -0.0017 10 1 0.6286 -2.5633 0.8906 11 6 2.2414 -3.6638 -0.0269 12 6 1.5081 -4.9576 -0.2721 13 6 2.1562 -6.1496 0.0154 14 6 1.5240 -7.3573 -0.1990 15 6 0.2325 -7.3789 -0.6983 16 9 -0.3936 -8.5579 -0.9067 17 6 -0.4123 -6.1910 -0.9882 18 6 0.2237 -4.9775 -0.7722 19 6 -0.5240 -3.7098 -1.0934 20 7 0.4043 -2.5800 -1.2024 21 1 -0.4850 0.8400 -0.0004 22 1 2.9684 -3.5035 -0.8231 23 1 2.7595 -3.7191 0.9305 24 1 3.1617 -6.1326 0.4090 25 1 2.0332 -8.2827 0.0261 26 1 -1.4184 -6.2078 -1.3807 27 1 -1.0537 -3.8334 -2.0381 28 1 -1.2439 -3.5055 -0.3009 29 1 0.9664 -2.6531 -2.0371 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260730824.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:01 Heat of formation + Delta-G solvation = -41.953929 kcal Electronic energy + Delta-G solvation = -14548.901048 eV Core-core repulsion = 11963.986713 eV Total energy + Delta-G solvation = -2584.914335 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.87658 -40.86903 -37.37750 -34.41650 -33.39687 -31.29802 -30.12468 -26.82740 -25.20212 -23.35772 -23.23665 -20.91202 -18.69459 -18.19578 -17.33366 -16.60273 -16.46426 -16.37318 -15.46056 -15.41896 -14.91838 -14.62851 -14.38384 -14.03921 -13.87287 -13.33000 -12.82155 -12.68841 -12.36029 -12.29871 -12.22768 -11.99556 -11.61743 -10.93618 -10.49630 -9.84417 -9.38690 -8.72307 -7.94255 -6.15316 0.18824 0.26078 1.47236 1.48699 1.57269 2.50261 2.58982 3.25945 3.27791 3.76485 3.86705 3.98490 4.06437 4.20171 4.39613 4.53965 4.71986 4.77375 4.81970 4.98436 5.02440 5.14254 5.21036 5.31779 5.49664 5.73474 5.82096 5.96795 6.23436 6.62141 7.02660 7.13957 7.57552 9.09485 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066612 B = 0.006858 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.241778 B = 4081.639577 C = 4422.355005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.035 3.965 3 Si 0.948 3.052 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.056 0.944 9 C 0.221 3.779 10 H 0.001 0.999 11 C -0.100 4.100 12 C -0.095 4.095 13 C -0.092 4.092 14 C -0.153 4.153 15 C 0.075 3.925 16 F -0.146 7.146 17 C -0.153 4.153 18 C -0.095 4.095 19 C 0.097 3.903 20 N -0.659 5.659 21 H 0.254 0.746 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.152 0.848 25 H 0.159 0.841 26 H 0.145 0.855 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.300 -11.998 -1.562 12.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.168 4.168 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.193 1.193 7 C -0.589 4.589 8 H 0.074 0.926 9 C 0.113 3.887 10 H 0.019 0.981 11 C -0.139 4.139 12 C -0.095 4.095 13 C -0.110 4.110 14 C -0.171 4.171 15 C 0.056 3.944 16 F -0.125 7.125 17 C -0.173 4.173 18 C -0.098 4.098 19 C -0.033 4.033 20 N -0.285 5.285 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.170 0.830 25 H 0.177 0.823 26 H 0.163 0.837 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.636 -11.428 -1.338 11.622 hybrid contribution 0.593 0.045 -0.090 0.601 sum 2.229 -11.384 -1.429 11.687 Atomic orbital electron populations 1.70219 1.07158 1.26318 1.48143 1.25675 0.95358 1.01860 0.93937 0.85748 0.78817 0.80046 0.77981 1.20415 1.21428 1.19323 1.21326 0.92565 0.91464 1.53521 0.92588 1.18944 0.89104 0.91697 0.88913 0.98075 1.21178 0.98802 0.92168 1.01735 1.20099 0.94401 0.96272 0.98732 1.21228 1.00808 0.90308 0.98692 1.21291 0.93494 1.00195 1.02131 1.17753 0.92774 0.80716 1.03142 1.91461 1.82551 1.45396 1.93084 1.21194 1.01693 0.90502 1.03879 1.20733 0.94825 0.96464 0.97757 1.20978 0.95631 0.85370 1.01340 1.61125 1.22889 1.39486 1.05022 0.93679 0.90973 0.90931 0.83011 0.82332 0.83726 0.89341 0.91982 0.86104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.06 12.78 21.45 0.27 -50.79 15 2 C 0.04 1.92 5.39 84.65 0.46 2.38 15 3 Si 0.95 42.90 29.54 68.60 2.03 44.93 15 4 H -0.28 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 15 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 7 C -0.55 -29.39 8.75 25.60 0.22 -29.16 15 8 H 0.06 2.90 7.75 -2.91 -0.02 2.88 15 9 C 0.22 10.76 2.31 44.08 0.10 10.86 15 10 H 0.00 0.07 8.05 -2.39 -0.02 0.05 15 11 C -0.10 -3.89 5.08 29.82 0.15 -3.74 15 12 C -0.09 -3.26 5.77 -19.84 -0.11 -3.37 15 13 C -0.09 -2.56 9.65 22.32 0.22 -2.35 15 14 C -0.15 -3.88 10.03 22.27 0.22 -3.65 15 15 C 0.08 2.13 7.30 22.33 0.16 2.29 15 16 F -0.15 -4.03 17.27 44.97 0.78 -3.26 15 17 C -0.15 -4.61 9.63 22.38 0.22 -4.40 15 18 C -0.10 -3.31 5.79 -19.87 -0.12 -3.42 15 19 C 0.10 3.74 6.34 85.59 0.54 4.29 15 20 N -0.66 -30.28 5.89 -499.82 -2.94 -33.22 15 21 H 0.25 14.11 8.31 -92.71 -0.77 13.34 15 22 H 0.07 2.74 8.11 -2.39 -0.02 2.72 15 23 H 0.07 2.70 8.14 -2.39 -0.02 2.68 15 24 H 0.15 3.40 8.06 -2.91 -0.02 3.37 15 25 H 0.16 3.03 8.06 -2.91 -0.02 3.00 15 26 H 0.14 3.79 8.06 -2.91 -0.02 3.76 15 27 H 0.09 2.98 8.13 -2.38 -0.02 2.96 15 28 H 0.06 2.59 8.14 -2.39 -0.02 2.57 15 29 H 0.32 14.16 8.74 -89.69 -0.78 13.37 15 Total: -1.00 -59.46 252.37 2.58 -56.89 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.38 Total: 15.72 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 2.06 Total: -30.28 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -2.67 Total: -84.00 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.78 Total: -3.26 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -59.46 2.58 -56.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260730824.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.934 kcal (2) G-P(sol) polarization free energy of solvation -59.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds