Wall clock time and date at job start Mon Mar 30 2020 02:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.63473 * 60.39910 * 9 7 2 11 11 C 1.52892 * 109.63397 * 181.00225 * 9 7 2 12 12 C 1.50728 * 109.94865 * 170.14206 * 11 9 7 13 13 C 1.38695 * 118.45388 * 163.19874 * 12 11 9 14 14 C 1.37993 * 120.38727 * 179.77440 * 13 12 11 15 15 C 1.38488 * 119.79836 * 359.97438 * 14 13 12 16 16 F 1.35098 * 120.09224 * 180.10131 * 15 14 13 17 17 C 1.38237 * 119.81158 * 0.08814 * 15 14 13 18 18 C 1.37847 * 121.65366 * 343.10805 * 12 11 9 19 19 C 1.50626 * 121.85097 * 0.34514 * 18 12 11 20 20 N 1.46620 * 110.50733 * 342.58705 * 19 18 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.39127 * 290.28256 * 11 9 7 23 23 H 1.08999 * 109.39342 * 49.98746 * 11 9 7 24 24 H 1.08003 * 119.81031 * 359.79476 * 13 12 11 25 25 H 1.07997 * 120.10211 * 179.97438 * 14 13 12 26 26 H 1.08004 * 119.81939 * 179.97438 * 17 15 14 27 27 H 1.09006 * 109.26927 * 222.32769 * 19 18 12 28 28 H 1.09001 * 109.24099 * 102.83739 * 19 18 12 29 29 H 1.00901 * 111.00640 * 289.04465 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6284 -2.5626 -0.8930 11 6 2.2411 -3.6640 0.0240 12 6 1.5069 -4.9578 0.2668 13 6 2.1547 -6.1495 -0.0226 14 6 1.5217 -7.3574 0.1888 15 6 0.2322 -7.3795 0.6934 16 9 -0.3924 -8.5587 0.9046 17 6 -0.4139 -6.1916 0.9806 18 6 0.2222 -4.9779 0.7660 19 6 -0.5245 -3.7105 1.0902 20 7 0.4040 -2.5812 1.2002 21 1 -0.4850 0.8401 0.0004 22 1 2.7612 -3.7171 -0.9324 23 1 2.9675 -3.5049 0.8210 24 1 3.1606 -6.1322 -0.4155 25 1 2.0303 -8.2825 -0.0386 26 1 -1.4196 -6.2088 1.3738 27 1 -1.0521 -3.8358 2.0358 28 1 -1.2467 -3.5069 0.2996 29 1 0.9661 -2.6550 2.0349 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260730828.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:04 Heat of formation + Delta-G solvation = -25.479908 kcal Electronic energy + Delta-G solvation = -14548.140181 eV Core-core repulsion = 11963.940213 eV Total energy + Delta-G solvation = -2584.199968 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.67189 -39.48542 -35.80113 -32.60132 -31.84741 -29.85053 -28.55972 -24.98207 -23.72835 -22.05011 -21.60719 -19.34825 -16.94540 -16.80129 -15.98312 -15.38144 -15.03349 -14.47938 -13.90987 -13.83326 -13.47319 -13.30271 -12.95426 -12.57564 -12.14217 -11.70453 -11.13750 -10.97939 -10.89879 -10.72323 -10.57421 -10.42241 -9.73363 -9.00960 -8.59922 -8.42506 -8.06159 -7.01236 -5.89861 -4.04209 1.46471 1.49649 3.33173 3.40401 3.42400 3.85997 4.46094 4.50322 4.99324 5.08309 5.25073 5.33987 5.50589 5.56704 5.84605 6.04529 6.15351 6.23514 6.27431 6.37807 6.39665 6.48238 6.61622 6.79871 7.09537 7.23509 7.39451 7.89034 8.17558 8.50512 8.78001 9.08135 9.64883 11.15064 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066617 B = 0.006858 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.213651 B = 4081.647967 C = 4422.390526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.084 3.916 3 Si 0.884 3.116 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.288 1.288 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.220 3.780 10 H 0.041 0.959 11 C -0.113 4.113 12 C -0.075 4.075 13 C -0.098 4.098 14 C -0.164 4.164 15 C 0.079 3.921 16 F -0.149 7.149 17 C -0.154 4.154 18 C -0.081 4.081 19 C 0.092 3.908 20 N -0.639 5.639 21 H 0.256 0.744 22 H 0.068 0.932 23 H 0.070 0.930 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.129 0.871 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 -10.586 1.303 10.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.123 4.123 3 Si 0.712 3.288 4 H -0.207 1.207 5 H -0.201 1.201 6 H -0.214 1.214 7 C -0.575 4.575 8 H 0.073 0.927 9 C 0.113 3.887 10 H 0.059 0.941 11 C -0.152 4.152 12 C -0.075 4.075 13 C -0.116 4.116 14 C -0.182 4.182 15 C 0.059 3.941 16 F -0.128 7.128 17 C -0.173 4.173 18 C -0.083 4.083 19 C -0.039 4.039 20 N -0.265 5.265 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.088 0.912 24 H 0.145 0.855 25 H 0.145 0.855 26 H 0.147 0.853 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.562 -10.002 1.080 10.076 hybrid contribution 0.945 -0.303 0.177 1.008 sum 1.507 -10.306 1.257 10.491 Atomic orbital electron populations 1.70083 1.05749 1.25783 1.46674 1.24947 0.94618 0.98618 0.94069 0.86762 0.79966 0.84060 0.78043 1.20723 1.20061 1.21351 1.20918 0.92271 0.90036 1.54279 0.92658 1.19188 0.88834 0.90782 0.89887 0.94127 1.21457 0.99752 0.92560 1.01400 1.20153 0.94039 0.96199 0.97152 1.21031 0.99816 0.91184 0.99579 1.20963 0.94120 0.99246 1.03908 1.17625 0.92329 0.80828 1.03272 1.91445 1.82587 1.45694 1.93092 1.21113 1.00978 0.90971 1.04254 1.20960 0.94527 0.96662 0.96190 1.21102 0.96476 0.85420 1.00911 1.61360 1.22568 1.37033 1.05510 0.93408 0.91340 0.91185 0.85550 0.85527 0.85276 0.91298 0.90061 0.86404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.98 12.78 55.43 0.71 -23.27 15 2 C 0.08 2.28 5.39 -17.82 -0.10 2.18 15 3 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.54 -14.13 8.75 -34.44 -0.30 -14.44 15 8 H 0.06 1.43 7.75 -52.49 -0.41 1.02 15 9 C 0.22 5.23 2.31 -68.77 -0.16 5.07 15 10 H 0.04 1.08 8.05 -51.93 -0.42 0.66 15 11 C -0.11 -2.22 5.08 -27.92 -0.14 -2.36 15 12 C -0.08 -1.34 5.77 -104.58 -0.60 -1.94 15 13 C -0.10 -1.51 9.65 -39.50 -0.38 -1.89 15 14 C -0.16 -2.38 10.03 -39.58 -0.40 -2.78 15 15 C 0.08 1.23 7.30 -39.49 -0.29 0.94 15 16 F -0.15 -2.29 17.27 2.25 0.04 -2.25 15 17 C -0.15 -2.46 9.63 -39.41 -0.38 -2.84 15 18 C -0.08 -1.43 5.79 -104.63 -0.61 -2.04 15 19 C 0.09 1.75 6.34 -5.16 -0.03 1.71 15 20 N -0.64 -14.38 5.89 -109.33 -0.64 -15.02 15 21 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 22 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 23 H 0.07 1.35 8.11 -51.93 -0.42 0.93 15 24 H 0.13 1.66 8.06 -52.48 -0.42 1.23 15 25 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 26 H 0.13 1.81 8.06 -52.48 -0.42 1.39 15 27 H 0.07 1.17 8.13 -51.93 -0.42 0.75 15 28 H 0.08 1.63 8.14 -51.93 -0.42 1.21 15 29 H 0.32 6.92 8.74 -39.29 -0.34 6.57 15 LS Contribution 252.37 15.07 3.80 3.80 Total: -1.00 -27.80 252.37 -7.76 -35.56 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.26 Total: 3.85 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -3.39 Total: -18.37 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.06 Total: -38.29 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.80 -7.76 -35.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260730828.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.082 kcal (2) G-P(sol) polarization free energy of solvation -27.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds