Wall clock time and date at job start Mon Mar 30 2020 03:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30337 * 125.68168 * 2 1 4 4 C 1.34387 * 109.43929 * 180.15832 * 3 2 1 5 5 C 1.33726 * 108.13241 * 359.58561 * 4 3 2 6 6 N 1.36683 * 125.68468 * 179.70278 * 2 1 3 7 7 C 1.34178 * 143.22839 * 0.02562 * 6 2 1 8 8 O 1.21501 * 123.58331 * 359.97438 * 7 6 2 9 9 N 1.34385 * 112.84383 * 179.97438 * 7 6 2 10 10 C 1.46497 * 126.44677 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47001 * 269.97558 * 10 9 7 12 12 H 1.07993 * 120.00352 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99522 * 180.02562 * 11 10 9 14 14 N 1.31524 * 120.00071 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00522 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47205 * 89.99721 * 15 13 11 17 17 H 1.48493 * 109.47418 * 210.00117 * 15 13 11 18 18 H 1.48502 * 109.46723 * 330.00135 * 15 13 11 19 19 C 1.47324 * 107.10545 * 0.02562 * 9 7 6 20 20 H 1.08998 * 109.47712 * 270.29511 * 1 2 3 21 21 H 1.08999 * 109.47338 * 30.29451 * 1 2 3 22 22 H 1.09007 * 109.47404 * 150.29500 * 1 2 3 23 23 H 1.08002 * 125.93745 * 179.85892 * 4 3 2 24 24 H 1.09000 * 109.47518 * 29.98139 * 10 9 7 25 25 H 1.09005 * 109.46590 * 149.97936 * 10 9 7 26 26 H 0.96997 * 120.00243 * 180.02562 * 14 13 11 27 27 H 1.09004 * 110.58946 * 241.46047 * 19 9 7 28 28 H 1.08998 * 110.59139 * 118.53647 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2671 1.0587 0.0000 4 6 3.5574 0.6828 -0.0035 5 6 3.6015 -0.6537 0.0034 6 7 2.3042 -1.1102 0.0058 7 6 2.2788 -2.4517 0.0124 8 8 1.2540 -3.1044 0.0157 9 7 3.5071 -2.9968 0.0149 10 6 3.8246 -4.4269 0.0214 11 6 3.9339 -4.9108 1.4444 12 1 3.7816 -4.2220 2.2622 13 6 4.2282 -6.2328 1.7023 14 7 4.3232 -6.6553 2.9442 15 14 4.4923 -7.4241 0.2879 16 1 5.9289 -7.4357 -0.0880 17 1 4.0789 -8.7878 0.7055 18 1 3.6789 -6.9957 -0.8784 19 6 4.4743 -1.8856 0.0100 20 1 -0.3634 0.0053 1.0276 21 1 -0.3634 0.8873 -0.5184 22 1 -0.3634 -0.8927 -0.5093 23 1 4.4105 1.3451 -0.0065 24 1 3.0344 -4.9769 -0.4897 25 1 4.7720 -4.5910 -0.4919 26 1 4.5306 -7.5853 3.1256 27 1 5.0938 -1.9205 -0.8862 28 1 5.0936 -1.9124 0.9066 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260759796.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:48 Heat of formation + Delta-G solvation = 64.713374 kcal Electronic energy + Delta-G solvation = -14768.593685 eV Core-core repulsion = 12208.224753 eV Total energy + Delta-G solvation = -2560.368932 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.18544 -39.05307 -36.07153 -33.65531 -32.35088 -31.62269 -28.95947 -27.67307 -25.18965 -23.84552 -21.58452 -20.65285 -19.21647 -17.37814 -16.72106 -16.47031 -15.76218 -14.72855 -14.31385 -13.81552 -13.72477 -13.68236 -13.26496 -12.90558 -12.59002 -12.48635 -12.24649 -11.99118 -11.31233 -10.81494 -10.59653 -10.38160 -10.02698 -9.94963 -9.72337 -8.78520 -8.55337 -8.07593 -6.26994 -4.29980 1.37825 2.38888 2.94082 3.14504 3.23841 3.24344 3.47903 3.71869 4.20140 4.21950 4.53461 4.77034 5.04976 5.22922 5.44969 5.55144 5.59192 5.70824 5.75659 5.94867 6.25028 6.48216 6.58655 6.94946 7.01978 7.31639 7.54826 7.84767 8.22504 8.51349 8.75287 9.29258 10.85785 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048550 B = 0.007750 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.583583 B = 3611.886901 C = 3810.495769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.274 3.726 3 N -0.475 5.475 4 C 0.016 3.984 5 C -0.053 4.053 6 N -0.474 5.474 7 C 0.698 3.302 8 O -0.532 6.532 9 N -0.585 5.585 10 C 0.248 3.752 11 C -0.547 4.547 12 H 0.078 0.922 13 C 0.078 3.922 14 N -0.888 5.888 15 Si 0.875 3.125 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.263 1.263 19 C 0.164 3.836 20 H 0.086 0.914 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.181 0.819 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.268 0.732 27 H 0.102 0.898 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 10.939 -7.560 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.013 3.987 3 N -0.194 5.194 4 C -0.127 4.127 5 C -0.163 4.163 6 N -0.180 5.180 7 C 0.399 3.601 8 O -0.404 6.404 9 N -0.319 5.319 10 C 0.130 3.870 11 C -0.585 4.585 12 H 0.096 0.904 13 C -0.126 4.126 14 N -0.525 5.525 15 Si 0.701 3.299 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.188 1.188 19 C 0.040 3.960 20 H 0.105 0.895 21 H 0.111 0.889 22 H 0.102 0.898 23 H 0.198 0.802 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.081 10.872 -7.435 13.216 hybrid contribution 0.619 -1.495 -0.426 1.674 sum -0.462 9.377 -7.862 12.245 Atomic orbital electron populations 1.20314 0.84086 1.04440 1.04226 1.23621 0.95706 0.78406 1.00952 1.70488 1.01601 1.26755 1.20590 1.21342 0.94762 0.90050 1.06577 1.22831 0.85801 0.96383 1.11265 1.45024 1.09591 1.07695 1.55678 1.15815 0.86015 0.79170 0.79079 1.90923 1.32641 1.62778 1.54065 1.48041 1.03051 1.08068 1.72729 1.19735 0.96859 0.71325 0.99126 1.21283 1.50239 0.96108 0.90848 0.90427 1.24826 0.94248 0.97754 0.95791 1.69881 1.47392 1.16711 1.18563 0.86869 0.79081 0.81145 0.82807 1.19689 1.20567 1.18780 1.20453 0.91413 0.79531 1.04643 0.89543 0.88897 0.89756 0.80169 0.93479 0.94000 0.92156 0.88061 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.51 36.00 0.38 -0.54 15 2 C 0.27 4.50 8.20 -154.04 -1.26 3.24 15 3 N -0.48 -7.54 11.24 -10.63 -0.12 -7.66 15 4 C 0.02 0.23 11.83 -18.02 -0.21 0.01 15 5 C -0.05 -0.84 7.77 -81.49 -0.63 -1.47 15 6 N -0.47 -8.80 3.23 -60.46 -0.20 -9.00 15 7 C 0.70 15.18 8.67 -87.80 -0.76 14.42 15 8 O -0.53 -13.20 17.67 5.36 0.09 -13.10 15 9 N -0.58 -12.09 2.99 -181.68 -0.54 -12.64 15 10 C 0.25 5.69 4.94 -5.20 -0.03 5.66 15 11 C -0.55 -15.01 9.94 -34.44 -0.34 -15.35 15 12 H 0.08 2.38 8.06 -52.49 -0.42 1.95 15 13 C 0.08 2.16 5.47 -17.82 -0.10 2.06 15 14 N -0.89 -26.35 13.96 55.43 0.77 -25.57 15 15 Si 0.87 20.11 27.47 -169.99 -4.67 15.44 15 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 18 H -0.26 -5.83 6.54 56.52 0.37 -5.46 15 19 C 0.16 2.54 7.62 -4.61 -0.04 2.50 15 20 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 21 H 0.09 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 23 H 0.18 1.84 8.06 -52.49 -0.42 1.41 15 24 H 0.05 1.14 7.07 -51.93 -0.37 0.77 15 25 H 0.04 0.86 7.57 -51.93 -0.39 0.47 15 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 15 27 H 0.10 1.24 8.14 -51.93 -0.42 0.81 15 28 H 0.11 1.61 8.14 -51.93 -0.42 1.19 15 LS Contribution 252.03 15.07 3.80 3.80 Total: -1.00 -33.06 252.03 -6.74 -39.80 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -2.89 Total: -1.60 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: -2.99 Total: 10.53 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.08 Total: -54.86 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -33.06 -6.74 -39.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260759796.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.513 kcal (2) G-P(sol) polarization free energy of solvation -33.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds