Wall clock time and date at job start Mon Mar 30 2020 03:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30337 * 125.68168 * 2 1 4 4 C 1.34387 * 109.43929 * 180.15832 * 3 2 1 5 5 C 1.33726 * 108.13241 * 359.58561 * 4 3 2 6 6 N 1.36683 * 125.68468 * 179.70278 * 2 1 3 7 7 C 1.34178 * 143.22839 * 0.02562 * 6 2 1 8 8 O 1.21501 * 123.58331 * 359.97438 * 7 6 2 9 9 N 1.34385 * 112.84383 * 179.97438 * 7 6 2 10 10 C 1.46497 * 126.44677 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47001 * 269.97558 * 10 9 7 12 12 H 1.07993 * 120.00352 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99522 * 180.02562 * 11 10 9 14 14 N 1.31524 * 120.00071 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 120.00522 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47205 * 89.99721 * 15 13 11 17 17 H 1.48493 * 109.47418 * 210.00117 * 15 13 11 18 18 H 1.48502 * 109.46723 * 330.00135 * 15 13 11 19 19 C 1.47324 * 107.10545 * 0.02562 * 9 7 6 20 20 H 1.08998 * 109.47712 * 270.29511 * 1 2 3 21 21 H 1.08999 * 109.47338 * 30.29451 * 1 2 3 22 22 H 1.09007 * 109.47404 * 150.29500 * 1 2 3 23 23 H 1.08002 * 125.93745 * 179.85892 * 4 3 2 24 24 H 1.09000 * 109.47518 * 29.98139 * 10 9 7 25 25 H 1.09005 * 109.46590 * 149.97936 * 10 9 7 26 26 H 0.96997 * 120.00243 * 180.02562 * 14 13 11 27 27 H 1.09004 * 110.58946 * 241.46047 * 19 9 7 28 28 H 1.08998 * 110.59139 * 118.53647 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2671 1.0587 0.0000 4 6 3.5574 0.6828 -0.0035 5 6 3.6015 -0.6537 0.0034 6 7 2.3042 -1.1102 0.0058 7 6 2.2788 -2.4517 0.0124 8 8 1.2540 -3.1044 0.0157 9 7 3.5071 -2.9968 0.0149 10 6 3.8246 -4.4269 0.0214 11 6 3.9339 -4.9108 1.4444 12 1 3.7816 -4.2220 2.2622 13 6 4.2282 -6.2328 1.7023 14 7 4.3232 -6.6553 2.9442 15 14 4.4923 -7.4241 0.2879 16 1 5.9289 -7.4357 -0.0880 17 1 4.0789 -8.7878 0.7055 18 1 3.6789 -6.9957 -0.8784 19 6 4.4743 -1.8856 0.0100 20 1 -0.3634 0.0053 1.0276 21 1 -0.3634 0.8873 -0.5184 22 1 -0.3634 -0.8927 -0.5093 23 1 4.4105 1.3451 -0.0065 24 1 3.0344 -4.9769 -0.4897 25 1 4.7720 -4.5910 -0.4919 26 1 4.5306 -7.5853 3.1256 27 1 5.0938 -1.9205 -0.8862 28 1 5.0936 -1.9124 0.9066 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260759796.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:48 Heat of formation + Delta-G solvation = 42.373851 kcal Electronic energy + Delta-G solvation = -14769.562399 eV Core-core repulsion = 12208.224753 eV Total energy + Delta-G solvation = -2561.337646 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.52221 -40.57052 -37.69470 -35.45312 -34.05484 -32.90392 -30.54185 -29.15836 -26.41985 -25.61404 -23.12168 -22.06802 -20.64887 -19.32766 -18.12206 -18.04302 -17.40457 -16.48067 -15.84526 -15.32496 -15.07028 -14.86829 -14.66705 -14.53450 -14.07292 -13.81350 -13.64644 -13.25586 -13.15047 -12.54179 -12.18337 -12.11684 -11.82564 -11.43039 -11.38845 -10.87118 -10.09288 -9.41495 -8.39328 -6.49428 0.03632 0.91479 1.35376 1.40377 1.49356 1.72718 1.95504 2.28574 2.34179 2.93587 2.98946 3.37171 3.52298 4.08009 4.35532 4.40912 4.47567 4.56224 4.66119 4.68910 4.73030 4.93271 5.27387 5.33884 5.39354 5.60451 6.01864 6.11904 6.52382 6.56471 6.90786 7.16021 8.77519 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048550 B = 0.007750 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.583583 B = 3611.886901 C = 3810.495769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.259 3.741 3 N -0.480 5.480 4 C 0.031 3.969 5 C -0.067 4.067 6 N -0.489 5.489 7 C 0.692 3.308 8 O -0.579 6.579 9 N -0.594 5.594 10 C 0.255 3.745 11 C -0.556 4.556 12 H 0.026 0.974 13 C 0.017 3.983 14 N -0.941 5.941 15 Si 0.952 3.048 16 H -0.245 1.245 17 H -0.284 1.284 18 H -0.248 1.248 19 C 0.164 3.836 20 H 0.094 0.906 21 H 0.122 0.878 22 H 0.072 0.928 23 H 0.224 0.776 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.272 0.728 27 H 0.144 0.856 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 11.874 -9.590 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.000 4.000 3 N -0.198 5.198 4 C -0.111 4.111 5 C -0.175 4.175 6 N -0.196 5.196 7 C 0.393 3.607 8 O -0.455 6.455 9 N -0.327 5.327 10 C 0.136 3.864 11 C -0.594 4.594 12 H 0.044 0.956 13 C -0.182 4.182 14 N -0.580 5.580 15 Si 0.773 3.227 16 H -0.169 1.169 17 H -0.209 1.209 18 H -0.171 1.171 19 C 0.042 3.958 20 H 0.112 0.888 21 H 0.140 0.860 22 H 0.091 0.909 23 H 0.240 0.760 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.161 0.839 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.253 11.891 -9.474 15.206 hybrid contribution 0.196 -1.644 0.304 1.684 sum 0.449 10.247 -9.170 13.758 Atomic orbital electron populations 1.20453 0.82252 1.05269 1.04991 1.24378 0.97095 0.77946 1.00619 1.70578 1.02417 1.26174 1.20669 1.22048 0.95218 0.89863 1.04003 1.23134 0.84688 0.97086 1.12575 1.45026 1.11257 1.06723 1.56546 1.16063 0.85783 0.80237 0.78604 1.90867 1.34148 1.64195 1.56245 1.48048 1.04092 1.08503 1.72068 1.19507 0.98032 0.72702 0.96174 1.21482 1.50152 0.95801 0.91997 0.95574 1.25871 0.93577 0.99848 0.98917 1.70046 1.48990 1.17478 1.21474 0.85664 0.80527 0.77528 0.78970 1.16928 1.20924 1.17129 1.20779 0.90607 0.77570 1.06887 0.88770 0.85993 0.90869 0.75990 0.94678 0.90164 0.91898 0.83877 0.86768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.77 10.51 71.23 0.75 -1.02 15 2 C 0.26 8.23 8.20 137.64 1.13 9.36 15 3 N -0.48 -14.08 11.24 -187.55 -2.11 -16.19 15 4 C 0.03 0.78 11.83 83.28 0.99 1.76 15 5 C -0.07 -1.99 7.77 40.73 0.32 -1.67 15 6 N -0.49 -17.84 3.23 -463.83 -1.50 -19.34 15 7 C 0.69 30.40 8.67 179.36 1.55 31.95 15 8 O -0.58 -29.64 17.67 -3.72 -0.07 -29.71 15 9 N -0.59 -24.20 2.99 -847.23 -2.53 -26.74 15 10 C 0.26 11.49 4.94 85.63 0.42 11.91 15 11 C -0.56 -31.18 9.94 25.60 0.25 -30.92 15 12 H 0.03 1.68 8.06 -2.91 -0.02 1.65 15 13 C 0.02 0.96 5.47 84.65 0.46 1.42 15 14 N -0.94 -57.28 13.96 21.45 0.30 -56.98 15 15 Si 0.95 40.76 27.47 68.60 1.88 42.64 15 16 H -0.25 -9.48 7.11 99.48 0.71 -8.78 15 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 18 H -0.25 -9.93 6.54 99.48 0.65 -9.27 15 19 C 0.16 4.72 7.62 85.56 0.65 5.37 15 20 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 21 H 0.12 2.23 8.14 -2.39 -0.02 2.21 15 22 H 0.07 1.98 8.14 -2.38 -0.02 1.96 15 23 H 0.22 3.48 8.06 -2.91 -0.02 3.46 15 24 H 0.04 1.67 7.07 -2.39 -0.02 1.66 15 25 H 0.08 3.03 7.57 -2.38 -0.02 3.01 15 26 H 0.27 15.30 8.31 -92.71 -0.77 14.53 15 27 H 0.14 2.92 8.14 -2.39 -0.02 2.90 15 28 H 0.11 3.18 8.14 -2.39 -0.02 3.16 15 Total: -1.00 -74.67 252.03 3.62 -71.05 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.12 Total: 7.09 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 6.53 Total: 28.16 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -5.84 Total: -119.24 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.07 Total: -29.71 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.88 Total: 42.64 kcal Total: -74.67 3.62 -71.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260759796.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.423 kcal (2) G-P(sol) polarization free energy of solvation -74.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds