Wall clock time and date at job start Mon Mar 30 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00133 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99959 * 3 2 1 7 7 C 1.40050 * 120.00167 * 180.27373 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.41574 * 119.99955 * 0.02562 * 7 2 1 10 10 N 1.33462 * 119.22706 * 0.02562 * 9 7 2 11 11 C 1.32523 * 120.44668 * 180.10569 * 10 9 7 12 12 N 1.38521 * 120.47492 * 179.97438 * 11 10 9 13 13 C 1.40241 * 119.04929 * 359.90851 * 11 10 9 14 14 C 1.38099 * 118.84116 * 359.95324 * 13 11 10 15 15 N 1.32405 * 119.17051 * 359.90023 * 14 13 11 16 16 C 1.50517 * 121.46688 * 180.29215 * 14 13 11 17 17 O 1.42794 * 110.14750 * 343.93370 * 16 14 13 18 18 C 1.43205 * 113.25948 * 51.77487 * 17 16 14 19 19 C 1.50489 * 119.60105 * 179.79452 * 13 11 10 20 20 H 0.97005 * 120.00041 * 359.72383 * 1 2 3 21 21 H 0.96996 * 120.00056 * 0.02562 * 12 11 10 22 22 H 0.97001 * 120.00082 * 179.97438 * 12 11 10 23 23 H 1.09002 * 109.35631 * 223.73062 * 16 14 13 24 24 H 1.08992 * 109.24649 * 104.07488 * 16 14 13 25 25 H 1.08996 * 109.62056 * 169.65541 * 18 17 16 26 26 H 1.08996 * 109.77624 * 49.18461 * 18 17 16 27 27 H 1.08993 * 109.43920 * 283.40709 * 19 13 11 28 28 H 1.09005 * 109.43850 * 43.32853 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 1.2759 2.7465 0.0006 5 1 3.0947 1.6965 1.2125 6 1 3.0946 1.6965 -1.2125 7 6 2.0072 -1.2128 -0.0058 8 1 3.0872 -1.2129 -0.0062 9 6 1.2994 -2.4389 -0.0122 10 7 -0.0351 -2.4209 -0.0131 11 6 -0.7220 -3.5542 -0.0170 12 7 -2.1071 -3.5363 -0.0174 13 6 -0.0265 -4.7720 -0.0220 14 6 1.3544 -4.7505 -0.0238 15 7 1.9817 -3.5845 -0.0227 16 6 2.1599 -6.0219 -0.0356 17 8 1.3355 -7.1300 0.3272 18 6 0.1295 -7.2128 -0.4405 19 6 -0.7940 -6.0665 -0.0217 20 1 -0.4850 0.8401 0.0040 21 1 -2.5811 -2.6900 -0.0153 22 1 -2.6030 -4.3699 -0.0206 23 1 2.9820 -5.9354 0.6749 24 1 2.5622 -6.1830 -1.0357 25 1 -0.3614 -8.1669 -0.2491 26 1 0.3614 -7.1268 -1.5021 27 1 -1.1803 -6.2589 0.9792 28 1 -1.6248 -5.9957 -0.7238 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260772921.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:20 Heat of formation + Delta-G solvation = -2.953436 kcal Electronic energy + Delta-G solvation = -14902.010141 eV Core-core repulsion = 12338.706955 eV Total energy + Delta-G solvation = -2563.303185 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.59003 -37.45749 -34.67441 -33.52773 -31.69297 -30.63851 -28.88179 -26.61320 -25.06793 -22.90697 -21.00265 -20.14197 -17.70935 -17.03686 -15.92927 -15.42498 -15.22515 -14.95320 -14.41837 -13.59273 -13.29256 -13.13358 -12.89595 -12.37623 -11.95587 -11.40634 -11.33717 -11.20048 -10.68591 -10.63078 -10.33142 -10.14762 -9.39650 -9.22957 -8.89377 -8.00580 -7.29051 -7.05897 -6.46913 -4.67687 2.66906 3.03507 3.07315 3.10675 3.22093 3.91982 4.30979 4.63918 4.70044 5.34254 5.44372 5.60114 5.69581 5.83453 5.95508 6.01790 6.21290 6.33600 6.50862 6.52582 6.69792 7.11575 7.21732 7.45213 7.56246 8.11809 8.14937 8.49006 8.64328 8.78825 9.27231 10.20476 10.40784 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.046077 B = 0.008818 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.529268 B = 3174.669226 C = 3741.741886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.068 3.932 3 Si 0.918 3.082 4 H -0.278 1.278 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.404 4.404 8 H 0.092 0.908 9 C 0.425 3.575 10 N -0.555 5.555 11 C 0.441 3.559 12 N -0.856 5.856 13 C -0.377 4.377 14 C 0.176 3.824 15 N -0.614 5.614 16 C 0.119 3.881 17 O -0.381 6.381 18 C 0.064 3.936 19 C -0.069 4.069 20 H 0.272 0.728 21 H 0.396 0.604 22 H 0.392 0.608 23 H 0.106 0.894 24 H 0.061 0.939 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.725 -5.936 -1.112 6.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.158 4.158 3 Si 0.741 3.259 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.439 4.439 8 H 0.110 0.890 9 C 0.186 3.814 10 N -0.282 5.282 11 C 0.190 3.810 12 N -0.402 5.402 13 C -0.390 4.390 14 C 0.025 3.975 15 N -0.338 5.338 16 C 0.042 3.958 17 O -0.299 6.299 18 C -0.013 4.013 19 C -0.107 4.107 20 H 0.084 0.916 21 H 0.225 0.775 22 H 0.221 0.779 23 H 0.124 0.876 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.261 -4.996 -0.972 5.569 hybrid contribution -0.780 0.212 -0.208 0.834 sum -3.040 -4.784 -1.180 5.790 Atomic orbital electron populations 1.70146 1.07281 1.27827 1.28303 1.26073 0.94978 1.01238 0.93523 0.86229 0.79893 0.79688 0.80055 1.20279 1.18802 1.18804 1.19278 0.94582 0.87535 1.42518 0.88983 1.19575 0.84477 0.90502 0.86830 1.69015 1.08703 1.23995 1.26439 1.18592 0.85368 0.89767 0.87276 1.41966 1.03193 1.10049 1.84973 1.19497 0.94679 0.93789 1.31075 1.21008 0.90444 0.94406 0.91635 1.68504 1.40391 0.97521 1.27367 1.21081 0.91795 0.82198 1.00754 1.87981 1.33071 1.46949 1.61910 1.22522 0.85848 0.98213 0.94736 1.20355 0.97171 0.93163 1.00047 0.91645 0.77543 0.77934 0.87623 0.92068 0.89574 0.93377 0.92753 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.83 11.42 55.55 0.63 -18.19 15 2 C 0.07 1.75 5.50 -17.36 -0.10 1.65 15 3 Si 0.92 18.73 29.56 -169.99 -5.02 13.70 15 4 H -0.28 -5.47 7.11 56.52 0.40 -5.07 15 5 H -0.26 -5.32 7.11 56.52 0.40 -4.91 15 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 7 C -0.40 -11.24 9.37 -37.63 -0.35 -11.59 15 8 H 0.09 2.45 7.85 -52.49 -0.41 2.04 15 9 C 0.42 12.29 7.37 -158.40 -1.17 11.12 15 10 N -0.55 -15.51 7.91 -11.87 -0.09 -15.61 15 11 C 0.44 10.71 7.80 -154.96 -1.21 9.50 15 12 N -0.86 -16.30 8.98 31.28 0.28 -16.01 15 13 C -0.38 -8.59 5.83 -104.02 -0.61 -9.20 15 14 C 0.18 4.22 6.71 -82.48 -0.55 3.67 15 15 N -0.61 -16.71 10.26 -9.10 -0.09 -16.80 15 16 C 0.12 2.31 6.93 35.92 0.25 2.56 15 17 O -0.38 -6.99 10.80 -35.23 -0.38 -7.37 15 18 C 0.06 1.00 6.85 37.18 0.25 1.26 15 19 C -0.07 -1.20 5.26 -27.96 -0.15 -1.35 15 20 H 0.27 6.49 8.29 -40.82 -0.34 6.15 15 21 H 0.40 7.32 8.95 -40.82 -0.37 6.96 15 22 H 0.39 6.06 7.16 -40.82 -0.29 5.77 15 23 H 0.11 1.95 8.14 -51.93 -0.42 1.53 15 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 25 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 26 H 0.05 0.73 8.08 -51.93 -0.42 0.31 15 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.06 0.85 7.28 -51.93 -0.38 0.48 15 LS Contribution 242.03 15.07 3.65 3.65 Total: -1.00 -31.49 242.03 -7.35 -38.83 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -2.69 Total: 10.18 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -3.63 Total: 7.63 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: 0.73 Total: -66.62 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: -0.38 Total: -7.37 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.49 -7.35 -38.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260772921.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.881 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds