Wall clock time and date at job start Mon Mar 30 2020 03:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86805 * 119.99745 * 2 1 4 4 H 1.48497 * 109.47322 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47165 * 120.00133 * 3 2 1 6 6 H 1.48501 * 109.47099 * 239.99959 * 3 2 1 7 7 C 1.40050 * 120.00167 * 180.27373 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.41574 * 119.99955 * 0.02562 * 7 2 1 10 10 N 1.33462 * 119.22706 * 0.02562 * 9 7 2 11 11 C 1.32523 * 120.44668 * 180.10569 * 10 9 7 12 12 N 1.38521 * 120.47492 * 179.97438 * 11 10 9 13 13 C 1.40241 * 119.04929 * 359.90851 * 11 10 9 14 14 C 1.38099 * 118.84116 * 359.95324 * 13 11 10 15 15 N 1.32405 * 119.17051 * 359.90023 * 14 13 11 16 16 C 1.50517 * 121.46688 * 180.29215 * 14 13 11 17 17 O 1.42794 * 110.14750 * 343.93370 * 16 14 13 18 18 C 1.43205 * 113.25948 * 51.77487 * 17 16 14 19 19 C 1.50489 * 119.60105 * 179.79452 * 13 11 10 20 20 H 0.97005 * 120.00041 * 359.72383 * 1 2 3 21 21 H 0.96996 * 120.00056 * 0.02562 * 12 11 10 22 22 H 0.97001 * 120.00082 * 179.97438 * 12 11 10 23 23 H 1.09002 * 109.35631 * 223.73062 * 16 14 13 24 24 H 1.08992 * 109.24649 * 104.07488 * 16 14 13 25 25 H 1.08996 * 109.62056 * 169.65541 * 18 17 16 26 26 H 1.08996 * 109.77624 * 49.18461 * 18 17 16 27 27 H 1.08993 * 109.43920 * 283.40709 * 19 13 11 28 28 H 1.09005 * 109.43850 * 43.32853 * 19 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 1.2759 2.7465 0.0006 5 1 3.0947 1.6965 1.2125 6 1 3.0946 1.6965 -1.2125 7 6 2.0072 -1.2128 -0.0058 8 1 3.0872 -1.2129 -0.0062 9 6 1.2994 -2.4389 -0.0122 10 7 -0.0351 -2.4209 -0.0131 11 6 -0.7220 -3.5542 -0.0170 12 7 -2.1071 -3.5363 -0.0174 13 6 -0.0265 -4.7720 -0.0220 14 6 1.3544 -4.7505 -0.0238 15 7 1.9817 -3.5845 -0.0227 16 6 2.1599 -6.0219 -0.0356 17 8 1.3355 -7.1300 0.3272 18 6 0.1295 -7.2128 -0.4405 19 6 -0.7940 -6.0665 -0.0217 20 1 -0.4850 0.8401 0.0040 21 1 -2.5811 -2.6900 -0.0153 22 1 -2.6030 -4.3699 -0.0206 23 1 2.9820 -5.9354 0.6749 24 1 2.5622 -6.1830 -1.0357 25 1 -0.3614 -8.1669 -0.2491 26 1 0.3614 -7.1268 -1.5021 27 1 -1.1803 -6.2589 0.9792 28 1 -1.6248 -5.9957 -0.7238 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260772921.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:19 Heat of formation + Delta-G solvation = -26.120613 kcal Electronic energy + Delta-G solvation = -14903.014745 eV Core-core repulsion = 12338.706955 eV Total energy + Delta-G solvation = -2564.307789 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.33862 -39.03518 -36.45152 -35.39554 -33.37875 -32.27023 -30.68761 -28.44474 -26.68743 -24.54946 -22.80310 -21.82102 -19.52841 -18.77850 -17.68082 -16.99823 -16.70052 -16.53441 -16.11579 -15.34327 -14.90486 -14.84512 -14.55993 -13.98355 -13.48568 -13.07248 -12.96756 -12.83067 -12.62803 -12.17948 -11.98029 -11.72378 -11.12520 -10.80717 -10.70450 -9.88928 -9.22412 -8.82506 -8.36462 -6.69184 0.81581 1.18722 1.40920 1.54109 1.55838 2.22515 2.79426 2.88623 3.05568 3.67626 3.90475 4.14617 4.20173 4.37119 4.46248 4.49709 4.69773 4.77923 4.90395 5.03108 5.10644 5.22259 5.45232 5.75926 6.11000 6.16272 6.36691 6.65824 6.79288 6.94769 7.45178 8.33442 8.47209 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.046077 B = 0.008818 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.529268 B = 3174.669226 C = 3741.741886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.026 3.974 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.445 4.445 8 H 0.087 0.913 9 C 0.394 3.606 10 N -0.587 5.587 11 C 0.419 3.581 12 N -0.834 5.834 13 C -0.379 4.379 14 C 0.151 3.849 15 N -0.645 5.645 16 C 0.127 3.873 17 O -0.386 6.386 18 C 0.060 3.940 19 C -0.067 4.067 20 H 0.281 0.719 21 H 0.400 0.600 22 H 0.411 0.589 23 H 0.110 0.890 24 H 0.079 0.921 25 H 0.128 0.872 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 -6.830 -1.333 7.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.197 4.197 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.183 1.183 7 C -0.480 4.480 8 H 0.105 0.895 9 C 0.154 3.846 10 N -0.316 5.316 11 C 0.168 3.832 12 N -0.381 5.381 13 C -0.392 4.392 14 C 0.003 3.997 15 N -0.370 5.370 16 C 0.049 3.951 17 O -0.304 6.304 18 C -0.016 4.016 19 C -0.106 4.106 20 H 0.092 0.908 21 H 0.229 0.771 22 H 0.243 0.757 23 H 0.128 0.872 24 H 0.097 0.903 25 H 0.146 0.854 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.051 -5.970 -1.194 6.810 hybrid contribution -0.675 0.333 -0.142 0.766 sum -3.726 -5.638 -1.336 6.889 Atomic orbital electron populations 1.70211 1.08802 1.29304 1.28572 1.26996 0.95903 1.04396 0.92368 0.85035 0.78485 0.74651 0.80075 1.18684 1.18408 1.18331 1.19594 0.94680 0.88857 1.44918 0.89499 1.20007 0.85404 0.91529 0.87665 1.68953 1.08682 1.25959 1.27968 1.19071 0.87118 0.89865 0.87160 1.41821 1.01353 1.11365 1.83602 1.20083 0.94848 0.95697 1.28572 1.21845 0.91884 0.95108 0.90898 1.68522 1.41071 0.98277 1.29082 1.21050 0.91471 0.80638 1.01891 1.87986 1.33941 1.45808 1.62620 1.22802 0.84608 0.99324 0.94906 1.20466 0.97697 0.91008 1.01394 0.90832 0.77138 0.75664 0.87213 0.90346 0.85420 0.92643 0.91902 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.18 11.42 21.84 0.25 -39.93 15 2 C 0.03 1.38 5.50 85.30 0.47 1.85 15 3 Si 1.00 38.83 29.56 68.60 2.03 40.86 15 4 H -0.26 -9.46 7.11 99.48 0.71 -8.75 15 5 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 15 7 C -0.44 -25.77 9.37 23.53 0.22 -25.55 15 8 H 0.09 4.87 7.85 -2.91 -0.02 4.85 15 9 C 0.39 23.65 7.37 135.18 1.00 24.65 15 10 N -0.59 -33.70 7.91 -191.47 -1.51 -35.21 15 11 C 0.42 20.33 7.80 133.46 1.04 21.37 15 12 N -0.83 -30.70 8.98 -54.96 -0.49 -31.20 15 13 C -0.38 -16.92 5.83 -19.48 -0.11 -17.04 15 14 C 0.15 7.27 6.71 42.38 0.28 7.55 15 15 N -0.64 -36.13 10.26 -182.69 -1.87 -38.01 15 16 C 0.13 4.78 6.93 71.18 0.49 5.27 15 17 O -0.39 -13.08 10.80 -148.98 -1.61 -14.69 15 18 C 0.06 1.65 6.85 72.00 0.49 2.15 15 19 C -0.07 -2.14 5.26 29.80 0.16 -1.98 15 20 H 0.28 13.51 8.29 -92.70 -0.77 12.74 15 21 H 0.40 14.45 8.95 -92.71 -0.83 13.62 15 22 H 0.41 11.67 7.16 -92.71 -0.66 11.01 15 23 H 0.11 3.99 8.14 -2.39 -0.02 3.97 15 24 H 0.08 2.67 8.14 -2.39 -0.02 2.65 15 25 H 0.13 2.53 8.14 -2.39 -0.02 2.51 15 26 H 0.06 1.48 8.08 -2.39 -0.02 1.46 15 27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 28 H 0.08 2.18 7.28 -2.38 -0.02 2.16 15 Total: -1.00 -70.55 242.03 0.55 -70.01 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.28 Total: 29.91 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 4.04 Total: 18.27 kcal Atomic # 7 Polarization: -140.72 SS G_CDS: -3.63 Total: -144.35 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -1.61 Total: -14.69 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -70.55 0.55 -70.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260772921.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.886 kcal (2) G-P(sol) polarization free energy of solvation -70.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds