Wall clock time and date at job start Mon Mar 30 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00041 * 2 1 4 4 H 1.48505 * 109.46968 * 269.99433 * 3 2 1 5 5 H 1.48498 * 109.47574 * 29.99765 * 3 2 1 6 6 H 1.48501 * 109.47583 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99734 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99970 * 0.27943 * 7 2 1 10 10 F 1.39893 * 109.47542 * 299.71920 * 9 7 2 11 11 F 1.39898 * 109.47474 * 59.72362 * 9 7 2 12 12 C 1.53004 * 109.47178 * 179.72178 * 9 7 2 13 13 N 1.46893 * 109.47273 * 174.28546 * 12 9 7 14 14 C 1.47017 * 111.00111 * 200.30440 * 13 12 9 15 15 C 1.53096 * 109.26154 * 177.60345 * 14 13 12 16 16 O 1.43019 * 109.25408 * 56.85421 * 15 14 13 17 17 C 1.43018 * 113.73762 * 301.32722 * 16 15 14 18 18 C 1.47014 * 111.00084 * 76.67236 * 13 12 9 19 19 H 0.96994 * 119.99843 * 0.02562 * 1 2 3 20 20 H 1.09010 * 109.46679 * 294.28672 * 12 9 7 21 21 H 1.09004 * 109.47182 * 54.27950 * 12 9 7 22 22 H 1.09002 * 109.50920 * 297.54776 * 14 13 12 23 23 H 1.09007 * 109.50444 * 57.67102 * 14 13 12 24 24 H 1.08995 * 109.50602 * 296.92009 * 15 14 13 25 25 H 1.09004 * 109.54214 * 176.80169 * 15 14 13 26 26 H 1.09003 * 109.50743 * 298.73695 * 17 16 15 27 27 H 1.09001 * 109.54512 * 178.63027 * 17 16 15 28 28 H 1.08994 * 109.50539 * 302.32381 * 18 13 12 29 29 H 1.09002 * 109.50886 * 62.41391 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 -0.0052 10 9 0.4468 -2.5784 1.1366 11 9 0.4468 -2.5683 -1.1478 12 6 2.2453 -3.6621 -0.0104 13 7 1.5160 -4.9304 0.1219 14 6 2.4036 -6.0014 0.5978 15 6 1.5921 -7.2869 0.7783 16 8 0.9559 -7.6206 -0.4584 17 6 0.0835 -6.5999 -0.9508 18 6 0.8798 -5.3073 -1.1487 19 1 -0.4849 0.8400 -0.0004 20 1 2.8027 -3.6594 -0.9472 21 1 2.9374 -3.5521 0.8245 22 1 3.1949 -6.1698 -0.1326 23 1 2.8440 -5.7119 1.5521 24 1 0.8351 -7.1345 1.5476 25 1 2.2561 -8.0984 1.0766 26 1 -0.7174 -6.4276 -0.2318 27 1 -0.3437 -6.9136 -1.9032 28 1 0.2077 -4.5114 -1.4694 29 1 1.6466 -5.4640 -1.9074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260801321.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:51 Heat of formation + Delta-G solvation = -145.614237 kcal Electronic energy + Delta-G solvation = -16029.090433 eV Core-core repulsion = 13008.911825 eV Total energy + Delta-G solvation = -3020.178608 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.76230 -44.76431 -39.13640 -35.40282 -32.83126 -30.92310 -29.68434 -26.63805 -24.08256 -23.71591 -20.66635 -20.08559 -17.31947 -16.08617 -15.93134 -15.61653 -15.33401 -14.78026 -14.58304 -14.37026 -13.94700 -13.38431 -13.09793 -12.45181 -11.84573 -11.71714 -11.47255 -11.21819 -11.14092 -11.06750 -11.00965 -10.78014 -10.40917 -10.31373 -10.07146 -9.54364 -8.83796 -8.71722 -7.91709 -6.26681 -4.54572 3.20043 3.25452 3.29040 3.97780 4.13473 4.29344 5.05333 5.11021 5.26770 5.28562 5.35131 5.51901 5.62365 5.76834 5.82076 5.85161 5.97670 6.09354 6.23926 6.26700 6.84511 7.17659 7.25009 7.37854 7.55952 7.61217 7.69779 8.52382 9.26467 10.78003 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.062863 B = 0.007977 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.304277 B = 3509.090040 C = 3658.789292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.086 3.914 3 Si 0.910 3.090 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.599 4.599 8 H 0.077 0.923 9 C 0.411 3.589 10 F -0.216 7.216 11 F -0.225 7.225 12 C 0.025 3.975 13 N -0.532 5.532 14 C 0.017 3.983 15 C 0.066 3.934 16 O -0.392 6.392 17 C 0.065 3.935 18 C 0.005 3.995 19 H 0.270 0.730 20 H 0.050 0.950 21 H 0.088 0.912 22 H 0.037 0.963 23 H 0.084 0.916 24 H 0.059 0.941 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.222 -9.543 -0.182 10.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.123 4.123 3 Si 0.736 3.264 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.637 4.637 8 H 0.095 0.905 9 C 0.375 3.625 10 F -0.197 7.197 11 F -0.206 7.206 12 C -0.103 4.103 13 N -0.257 5.257 14 C -0.111 4.111 15 C -0.012 4.012 16 O -0.311 6.311 17 C -0.012 4.012 18 C -0.123 4.123 19 H 0.079 0.921 20 H 0.068 0.932 21 H 0.106 0.894 22 H 0.055 0.945 23 H 0.102 0.898 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.649 -9.552 0.078 9.913 hybrid contribution 0.949 1.072 -0.472 1.508 sum 3.598 -8.479 -0.394 9.220 Atomic orbital electron populations 1.70050 1.06268 1.27776 1.44370 1.25107 0.94931 1.00088 0.92219 0.86320 0.79802 0.81810 0.78475 1.20074 1.20677 1.19330 1.21537 0.94005 0.89471 1.58637 0.90471 1.18314 0.80523 0.93010 0.70679 1.92863 1.77065 1.97348 1.52411 1.92760 1.77631 1.96933 1.53293 1.23210 0.96704 0.88507 1.01891 1.62210 1.32022 1.02543 1.28931 1.22790 0.94856 0.92561 1.00928 1.22627 0.96085 0.95826 0.86616 1.87910 1.61854 1.42144 1.39204 1.22689 0.92096 0.86848 0.99532 1.23126 0.99493 0.99188 0.90462 0.92060 0.93156 0.89364 0.94474 0.89794 0.92300 0.88929 0.92223 0.88733 0.87326 0.94537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.29 12.62 55.43 0.70 -24.60 15 2 C 0.09 2.41 5.39 -17.82 -0.10 2.32 15 3 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 15 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.27 -5.98 7.11 56.52 0.40 -5.57 15 7 C -0.60 -16.65 8.60 -34.44 -0.30 -16.94 15 8 H 0.08 2.01 7.74 -52.49 -0.41 1.60 15 9 C 0.41 10.90 1.58 -27.88 -0.04 10.86 15 10 F -0.22 -6.21 16.43 2.25 0.04 -6.17 15 11 F -0.22 -6.22 13.98 2.25 0.03 -6.19 15 12 C 0.03 0.54 4.60 -3.83 -0.02 0.52 15 13 N -0.53 -10.22 4.48 -234.30 -1.05 -11.27 15 14 C 0.02 0.26 5.59 -3.71 -0.02 0.24 15 15 C 0.07 0.90 7.01 37.21 0.26 1.16 15 16 O -0.39 -6.11 10.83 -35.23 -0.38 -6.49 15 17 C 0.07 1.00 7.01 37.21 0.26 1.26 15 18 C 0.01 0.09 5.37 -3.71 -0.02 0.07 15 19 H 0.27 7.43 8.31 -40.82 -0.34 7.09 15 20 H 0.05 1.03 7.97 -51.92 -0.41 0.62 15 21 H 0.09 1.77 7.84 -51.93 -0.41 1.36 15 22 H 0.04 0.55 8.14 -51.93 -0.42 0.13 15 23 H 0.08 1.18 8.02 -51.92 -0.42 0.77 15 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 27 H 0.09 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.11 2.19 5.60 -51.93 -0.29 1.90 15 29 H 0.04 0.64 8.13 -51.93 -0.42 0.21 15 LS Contribution 248.67 15.07 3.75 3.75 Total: -1.00 -31.46 248.67 -5.51 -36.98 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -3.61 Total: -1.36 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 0.03 Total: -0.51 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: -0.35 Total: -35.86 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.38 Total: -6.49 kcal Atomic # 9 Polarization: -12.43 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.46 -5.51 -36.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260801321.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.638 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds