Wall clock time and date at job start Mon Mar 30 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86793 * 120.00041 * 2 1 4 4 H 1.48505 * 109.46968 * 269.99433 * 3 2 1 5 5 H 1.48498 * 109.47574 * 29.99765 * 3 2 1 6 6 H 1.48501 * 109.47583 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99791 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99734 * 180.02562 * 7 2 1 9 9 C 1.50693 * 119.99970 * 0.27943 * 7 2 1 10 10 F 1.39893 * 109.47542 * 299.71920 * 9 7 2 11 11 F 1.39898 * 109.47474 * 59.72362 * 9 7 2 12 12 C 1.53004 * 109.47178 * 179.72178 * 9 7 2 13 13 N 1.46893 * 109.47273 * 174.28546 * 12 9 7 14 14 C 1.47017 * 111.00111 * 200.30440 * 13 12 9 15 15 C 1.53096 * 109.26154 * 177.60345 * 14 13 12 16 16 O 1.43019 * 109.25408 * 56.85421 * 15 14 13 17 17 C 1.43018 * 113.73762 * 301.32722 * 16 15 14 18 18 C 1.47014 * 111.00084 * 76.67236 * 13 12 9 19 19 H 0.96994 * 119.99843 * 0.02562 * 1 2 3 20 20 H 1.09010 * 109.46679 * 294.28672 * 12 9 7 21 21 H 1.09004 * 109.47182 * 54.27950 * 12 9 7 22 22 H 1.09002 * 109.50920 * 297.54776 * 14 13 12 23 23 H 1.09007 * 109.50444 * 57.67102 * 14 13 12 24 24 H 1.08995 * 109.50602 * 296.92009 * 15 14 13 25 25 H 1.09004 * 109.54214 * 176.80169 * 15 14 13 26 26 H 1.09003 * 109.50743 * 298.73695 * 17 16 15 27 27 H 1.09001 * 109.54512 * 178.63027 * 17 16 15 28 28 H 1.08994 * 109.50539 * 302.32381 * 18 13 12 29 29 H 1.09002 * 109.50886 * 62.41391 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 -0.0052 10 9 0.4468 -2.5784 1.1366 11 9 0.4468 -2.5683 -1.1478 12 6 2.2453 -3.6621 -0.0104 13 7 1.5160 -4.9304 0.1219 14 6 2.4036 -6.0014 0.5978 15 6 1.5921 -7.2869 0.7783 16 8 0.9559 -7.6206 -0.4584 17 6 0.0835 -6.5999 -0.9508 18 6 0.8798 -5.3073 -1.1487 19 1 -0.4849 0.8400 -0.0004 20 1 2.8027 -3.6594 -0.9472 21 1 2.9374 -3.5521 0.8245 22 1 3.1949 -6.1698 -0.1326 23 1 2.8440 -5.7119 1.5521 24 1 0.8351 -7.1345 1.5476 25 1 2.2561 -8.0984 1.0766 26 1 -0.7174 -6.4276 -0.2318 27 1 -0.3437 -6.9136 -1.9032 28 1 0.2077 -4.5114 -1.4694 29 1 1.6466 -5.4640 -1.9074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260801321.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:51 Heat of formation + Delta-G solvation = -168.261285 kcal Electronic energy + Delta-G solvation = -16030.072483 eV Core-core repulsion = 13008.911825 eV Total energy + Delta-G solvation = -3021.160658 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.097 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.88888 -46.92914 -40.40991 -36.80056 -34.93133 -32.14256 -31.43049 -28.36651 -25.78604 -24.98151 -22.51131 -21.44070 -19.35748 -17.74759 -17.43736 -17.31659 -16.96720 -16.40480 -15.99280 -15.95498 -15.73465 -14.94147 -14.66163 -14.14155 -13.85824 -13.43017 -13.30043 -13.11196 -12.89232 -12.83227 -12.39311 -12.34122 -12.21098 -12.00644 -11.59270 -11.02987 -10.92295 -10.46326 -9.39475 -8.36931 -6.74018 1.39132 1.41872 1.53706 2.28303 2.70115 2.93564 2.96251 3.59048 3.91030 3.97284 4.06479 4.17849 4.22971 4.33449 4.43066 4.61587 4.71290 4.78625 4.83158 4.95165 4.99880 5.37903 5.47538 5.52598 5.90009 5.99223 6.14810 6.40596 7.12798 8.68958 Molecular weight = 221.10amu Principal moments of inertia in cm(-1) A = 0.062863 B = 0.007977 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.304277 B = 3509.090040 C = 3658.789292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 0.986 3.014 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.621 4.621 8 H 0.090 0.910 9 C 0.390 3.610 10 F -0.235 7.235 11 F -0.238 7.238 12 C 0.041 3.959 13 N -0.551 5.551 14 C 0.016 3.984 15 C 0.065 3.935 16 O -0.398 6.398 17 C 0.072 3.928 18 C 0.006 3.994 19 H 0.272 0.728 20 H 0.055 0.945 21 H 0.099 0.901 22 H 0.045 0.955 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.128 0.872 26 H 0.053 0.947 27 H 0.119 0.881 28 H 0.080 0.920 29 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.714 -10.100 -0.026 11.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.177 4.177 3 Si 0.808 3.192 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.658 4.658 8 H 0.109 0.891 9 C 0.354 3.646 10 F -0.217 7.217 11 F -0.220 7.220 12 C -0.088 4.088 13 N -0.276 5.276 14 C -0.112 4.112 15 C -0.012 4.012 16 O -0.317 6.317 17 C -0.005 4.005 18 C -0.122 4.122 19 H 0.081 0.919 20 H 0.074 0.926 21 H 0.118 0.882 22 H 0.063 0.937 23 H 0.115 0.885 24 H 0.075 0.925 25 H 0.146 0.854 26 H 0.072 0.928 27 H 0.137 0.863 28 H 0.098 0.902 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.154 -10.138 0.235 10.959 hybrid contribution 0.467 1.198 -0.508 1.382 sum 4.620 -8.941 -0.273 10.068 Atomic orbital electron populations 1.70185 1.08246 1.28974 1.45764 1.26182 0.95785 1.04352 0.91382 0.85152 0.78676 0.76484 0.78911 1.19189 1.20320 1.17800 1.22063 0.94931 0.90494 1.58357 0.89149 1.18858 0.80764 0.95303 0.69643 1.92807 1.77836 1.97543 1.53475 1.92729 1.78197 1.97172 1.53879 1.22900 0.95182 0.88089 1.02606 1.62135 1.32998 1.02888 1.29603 1.22930 0.94733 0.91945 1.01546 1.22823 0.96346 0.96150 0.85878 1.87910 1.61852 1.41942 1.39953 1.22677 0.91453 0.85673 1.00716 1.23076 0.99328 0.99561 0.90259 0.91855 0.92631 0.88246 0.93667 0.88495 0.92544 0.85405 0.92835 0.86277 0.90212 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.18 12.62 21.45 0.27 -53.91 15 2 C 0.03 1.57 5.39 84.66 0.46 2.03 15 3 Si 0.99 42.48 29.54 68.60 2.03 44.51 15 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 6 H -0.25 -10.26 7.11 99.48 0.71 -9.55 15 7 C -0.62 -34.53 8.60 25.60 0.22 -34.31 15 8 H 0.09 4.63 7.74 -2.91 -0.02 4.60 15 9 C 0.39 20.96 1.58 29.85 0.05 21.01 15 10 F -0.24 -13.83 16.43 44.97 0.74 -13.10 15 11 F -0.24 -13.56 13.98 44.97 0.63 -12.93 15 12 C 0.04 1.73 4.60 86.31 0.40 2.12 15 13 N -0.55 -20.66 4.48 -895.18 -4.01 -24.67 15 14 C 0.02 0.45 5.59 86.31 0.48 0.94 15 15 C 0.06 1.60 7.01 72.01 0.50 2.10 15 16 O -0.40 -11.40 10.83 -148.98 -1.61 -13.01 15 17 C 0.07 2.10 7.01 72.02 0.50 2.60 15 18 C 0.01 0.21 5.37 86.32 0.46 0.67 15 19 H 0.27 15.27 8.31 -92.71 -0.77 14.50 15 20 H 0.06 2.24 7.97 -2.38 -0.02 2.22 15 21 H 0.10 3.87 7.84 -2.39 -0.02 3.86 15 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 15 23 H 0.10 2.48 8.02 -2.38 -0.02 2.46 15 24 H 0.06 1.43 8.14 -2.39 -0.02 1.41 15 25 H 0.13 2.28 8.14 -2.38 -0.02 2.26 15 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 15 27 H 0.12 2.85 8.14 -2.39 -0.02 2.83 15 28 H 0.08 3.29 5.60 -2.39 -0.01 3.28 15 29 H 0.04 1.39 8.13 -2.39 -0.02 1.38 15 Total: -1.00 -67.51 248.67 2.26 -65.25 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.14 Total: 10.70 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 3.08 Total: -2.84 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -3.74 Total: -78.58 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -1.61 Total: -13.01 kcal Atomic # 9 Polarization: -27.39 SS G_CDS: 1.37 Total: -26.02 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -67.51 2.26 -65.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260801321.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.009 kcal (2) G-P(sol) polarization free energy of solvation -67.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds