Wall clock time and date at job start Mon Mar 30 2020 02:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36015 * 117.00117 * 2 1 4 4 C 1.38325 * 120.00788 * 359.93413 * 3 2 1 5 5 C 1.38770 * 120.40562 * 179.97438 * 4 3 2 6 6 C 1.37642 * 120.42958 * 0.04975 * 5 4 3 7 7 C 1.39922 * 120.01246 * 359.97438 * 6 5 4 8 8 C 1.47426 * 120.19804 * 179.97438 * 7 6 5 9 9 O 1.21844 * 120.00224 * 185.79393 * 8 7 6 10 10 C 1.41779 * 119.99875 * 5.79731 * 8 7 6 11 11 H 1.07994 * 120.00231 * 359.97438 * 10 8 7 12 12 C 1.40326 * 119.99842 * 179.97438 * 10 8 7 13 13 N 1.30538 * 120.00228 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00030 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47006 * 60.00444 * 14 12 10 16 16 H 1.48502 * 109.47295 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47417 * 300.00053 * 14 12 10 18 18 C 1.39417 * 120.01439 * 179.97438 * 3 2 1 19 19 N 1.38916 * 120.21596 * 0.25827 * 18 3 2 20 20 H 1.08996 * 109.47355 * 299.99457 * 1 2 3 21 21 H 1.09002 * 109.47310 * 60.00394 * 1 2 3 22 22 H 1.09008 * 109.47029 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.79544 * 0.04370 * 4 3 2 24 24 H 1.07995 * 119.78488 * 180.02562 * 5 4 3 25 25 H 1.07993 * 119.99443 * 179.97438 * 6 5 4 26 26 H 0.96998 * 120.00502 * 180.02562 * 13 12 10 27 27 H 0.97000 * 120.00583 * 174.24053 * 19 18 3 28 28 H 0.97006 * 119.99703 * 354.23093 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2933 2.3721 -0.0014 5 6 1.9147 3.6129 -0.0009 6 6 3.2881 3.7047 0.0000 7 6 4.0672 2.5425 0.0009 8 6 5.5385 2.6361 0.0013 9 8 6.2132 1.6271 -0.1045 10 6 6.1683 3.9003 0.1247 11 1 5.5704 4.7947 0.2181 12 6 7.5688 3.9894 0.1256 13 7 8.2916 2.9083 0.0123 14 14 8.3987 5.6550 0.2876 15 1 7.9984 6.2847 1.5715 16 1 9.8729 5.4783 0.2608 17 1 7.9845 6.5263 -0.8414 18 6 3.4387 1.2852 0.0005 19 7 4.2000 0.1232 -0.0043 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2150 2.3119 -0.0017 24 1 1.3169 4.5123 -0.0015 25 1 3.7643 4.6740 0.0000 26 1 9.2597 2.9698 0.0132 27 1 5.1649 0.1757 -0.0882 28 1 3.7665 -0.7409 0.0763 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260816710.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:46 Heat of formation + Delta-G solvation = -52.021250 kcal Electronic energy + Delta-G solvation = -14615.946155 eV Core-core repulsion = 12018.222479 eV Total energy + Delta-G solvation = -2597.723676 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.55673 -37.48405 -35.65291 -33.69312 -32.54341 -29.86544 -28.16167 -26.72534 -26.50054 -22.52649 -21.26958 -19.71327 -17.58345 -16.43082 -16.02150 -15.73950 -15.32090 -15.15177 -14.35716 -13.92076 -13.25723 -13.22459 -12.76210 -12.34469 -11.85074 -11.70104 -11.42706 -11.04074 -10.96980 -10.75920 -10.46525 -10.39971 -10.09384 -9.85738 -8.98859 -7.68554 -7.48411 -6.43942 -6.32790 -4.91812 1.94554 2.40939 3.06892 3.12082 3.14202 3.72615 4.00384 4.11557 4.71912 4.93082 5.25346 5.35340 5.47029 5.62472 5.74761 5.80182 6.02879 6.21208 6.33293 6.72003 6.84408 7.06396 7.22430 7.42118 7.53332 7.88973 8.01977 8.51155 8.67683 8.77791 9.10046 10.28224 10.50366 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.051275 B = 0.007815 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.939991 B = 3581.904255 C = 4109.002154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.327 6.327 3 C 0.013 3.987 4 C -0.162 4.162 5 C -0.174 4.174 6 C -0.070 4.070 7 C -0.170 4.170 8 C 0.401 3.599 9 O -0.549 6.549 10 C -0.512 4.512 11 H 0.076 0.924 12 C 0.080 3.920 13 N -0.735 5.735 14 Si 0.908 3.092 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.264 1.264 18 C 0.236 3.764 19 N -0.856 5.856 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.089 0.911 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.128 0.872 26 H 0.274 0.726 27 H 0.418 0.582 28 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 -0.323 0.264 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.241 6.241 3 C -0.035 4.035 4 C -0.182 4.182 5 C -0.195 4.195 6 C -0.089 4.089 7 C -0.176 4.176 8 C 0.300 3.700 9 O -0.440 6.440 10 C -0.543 4.543 11 H 0.094 0.906 12 C -0.144 4.144 13 N -0.363 5.363 14 Si 0.731 3.269 15 H -0.189 1.189 16 H -0.203 1.203 17 H -0.189 1.189 18 C 0.126 3.874 19 N -0.408 5.408 20 H 0.066 0.934 21 H 0.066 0.934 22 H 0.108 0.892 23 H 0.132 0.868 24 H 0.129 0.871 25 H 0.145 0.855 26 H 0.085 0.915 27 H 0.264 0.736 28 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -9.696 -1.077 0.191 9.757 hybrid contribution -0.008 0.786 0.109 0.793 sum -9.704 -0.291 0.301 9.713 Atomic orbital electron populations 1.22835 0.79768 1.02683 1.00690 1.85919 1.20135 1.27335 1.90746 1.18440 0.90612 0.84323 1.10094 1.20847 0.98455 0.92231 1.06617 1.20511 0.94729 0.95963 1.08265 1.21196 0.92572 0.98267 0.96890 1.21109 0.99101 0.89896 1.07513 1.17900 0.83428 0.90182 0.78456 1.90101 1.64622 1.37908 1.51390 1.20849 0.91709 0.95247 1.46500 0.90597 1.26013 0.97869 0.97788 0.92697 1.69938 1.06538 1.29248 1.30588 0.86413 0.78129 0.82384 0.79930 1.18872 1.20325 1.18866 1.17549 0.86589 0.88367 0.94888 1.43367 1.12461 1.04107 1.80840 0.93405 0.93399 0.89232 0.86798 0.87112 0.85465 0.91451 0.73575 0.79167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 9.81 101.05 0.99 1.42 15 2 O -0.33 -5.64 9.75 -19.79 -0.19 -5.83 15 3 C 0.01 0.26 6.70 -39.11 -0.26 -0.01 15 4 C -0.16 -2.85 9.04 -39.35 -0.36 -3.21 15 5 C -0.17 -3.15 10.02 -39.60 -0.40 -3.55 15 6 C -0.07 -1.48 9.42 -39.17 -0.37 -1.85 15 7 C -0.17 -4.15 5.90 -104.65 -0.62 -4.77 15 8 C 0.40 11.31 6.89 -34.49 -0.24 11.07 15 9 O -0.55 -16.64 12.19 5.06 0.06 -16.58 15 10 C -0.51 -13.98 8.85 -37.44 -0.33 -14.32 15 11 H 0.08 1.89 6.06 -52.49 -0.32 1.57 15 12 C 0.08 2.12 5.50 -17.32 -0.10 2.02 15 13 N -0.73 -20.73 11.73 55.57 0.65 -20.07 15 14 Si 0.91 19.10 29.56 -169.99 -5.03 14.08 15 15 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 16 H -0.28 -5.71 7.11 56.52 0.40 -5.30 15 17 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 18 C 0.24 5.38 6.79 -83.33 -0.57 4.81 15 19 N -0.86 -18.79 8.92 32.69 0.29 -18.50 15 20 H 0.05 0.53 7.66 -51.93 -0.40 0.13 15 21 H 0.05 0.53 7.65 -51.93 -0.40 0.13 15 22 H 0.09 0.84 8.14 -51.92 -0.42 0.42 15 23 H 0.11 1.62 6.26 -52.49 -0.33 1.29 15 24 H 0.11 1.65 8.06 -52.49 -0.42 1.23 15 25 H 0.13 2.55 6.24 -52.49 -0.33 2.23 15 26 H 0.27 6.98 8.29 -40.82 -0.34 6.64 15 27 H 0.42 10.16 5.35 -40.92 -0.22 9.95 15 28 H 0.38 7.24 8.20 -40.82 -0.33 6.91 15 LS Contribution 244.29 15.07 3.68 3.68 Total: -1.00 -31.38 244.29 -5.07 -36.45 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -2.30 Total: 15.13 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.24 Total: -8.36 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.94 Total: -38.57 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.13 Total: -22.41 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.38 -5.07 -36.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260816710.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.570 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds