Wall clock time and date at job start Mon Mar 30 2020 02:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36015 * 117.00117 * 2 1 4 4 C 1.38325 * 120.00788 * 359.93413 * 3 2 1 5 5 C 1.38770 * 120.40562 * 179.97438 * 4 3 2 6 6 C 1.37642 * 120.42958 * 0.04975 * 5 4 3 7 7 C 1.39922 * 120.01246 * 359.97438 * 6 5 4 8 8 C 1.47426 * 120.19804 * 179.97438 * 7 6 5 9 9 O 1.21844 * 120.00224 * 185.79393 * 8 7 6 10 10 C 1.41779 * 119.99875 * 5.79731 * 8 7 6 11 11 H 1.07994 * 120.00231 * 359.97438 * 10 8 7 12 12 C 1.40326 * 119.99842 * 179.97438 * 10 8 7 13 13 N 1.30538 * 120.00228 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 120.00030 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47006 * 60.00444 * 14 12 10 16 16 H 1.48502 * 109.47295 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47417 * 300.00053 * 14 12 10 18 18 C 1.39417 * 120.01439 * 179.97438 * 3 2 1 19 19 N 1.38916 * 120.21596 * 0.25827 * 18 3 2 20 20 H 1.08996 * 109.47355 * 299.99457 * 1 2 3 21 21 H 1.09002 * 109.47310 * 60.00394 * 1 2 3 22 22 H 1.09008 * 109.47029 * 179.97438 * 1 2 3 23 23 H 1.08000 * 119.79544 * 0.04370 * 4 3 2 24 24 H 1.07995 * 119.78488 * 180.02562 * 5 4 3 25 25 H 1.07993 * 119.99443 * 179.97438 * 6 5 4 26 26 H 0.96998 * 120.00502 * 180.02562 * 13 12 10 27 27 H 0.97000 * 120.00583 * 174.24053 * 19 18 3 28 28 H 0.97006 * 119.99703 * 354.23093 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2933 2.3721 -0.0014 5 6 1.9147 3.6129 -0.0009 6 6 3.2881 3.7047 0.0000 7 6 4.0672 2.5425 0.0009 8 6 5.5385 2.6361 0.0013 9 8 6.2132 1.6271 -0.1045 10 6 6.1683 3.9003 0.1247 11 1 5.5704 4.7947 0.2181 12 6 7.5688 3.9894 0.1256 13 7 8.2916 2.9083 0.0123 14 14 8.3987 5.6550 0.2876 15 1 7.9984 6.2847 1.5715 16 1 9.8729 5.4783 0.2608 17 1 7.9845 6.5263 -0.8414 18 6 3.4387 1.2852 0.0005 19 7 4.2000 0.1232 -0.0043 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 0.2150 2.3119 -0.0017 24 1 1.3169 4.5123 -0.0015 25 1 3.7643 4.6740 0.0000 26 1 9.2597 2.9698 0.0132 27 1 5.1649 0.1757 -0.0882 28 1 3.7665 -0.7409 0.0763 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260816710.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:46 Heat of formation + Delta-G solvation = -74.509030 kcal Electronic energy + Delta-G solvation = -14616.921299 eV Core-core repulsion = 12018.222479 eV Total energy + Delta-G solvation = -2598.698820 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.04796 -39.17748 -37.37808 -35.38604 -34.52761 -31.54352 -29.58315 -28.50416 -27.89611 -24.23916 -22.81710 -21.49258 -19.13132 -18.29216 -17.62034 -17.36284 -16.91494 -16.51667 -15.82164 -15.52466 -15.04162 -14.83637 -14.51632 -13.84079 -13.38080 -13.24814 -13.24265 -12.68694 -12.63440 -12.15075 -12.08250 -11.83020 -11.80784 -11.42590 -10.95552 -9.53167 -9.27308 -8.31542 -8.06059 -7.02314 0.32245 0.85203 1.39787 1.42110 1.54392 2.22452 2.26630 2.48796 2.98450 3.31291 3.78007 4.06465 4.25383 4.42379 4.48921 4.56024 4.60224 4.77413 4.83048 5.09600 5.19761 5.34097 5.55780 5.84966 5.97660 6.02734 6.45909 6.69564 6.75397 6.93110 7.29136 8.27299 8.50735 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.051275 B = 0.007815 C = 0.006813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.939991 B = 3581.904255 C = 4109.002154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.342 6.342 3 C 0.017 3.983 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.081 4.081 7 C -0.212 4.212 8 C 0.376 3.624 9 O -0.589 6.589 10 C -0.542 4.542 11 H 0.093 0.907 12 C 0.025 3.975 13 N -0.785 5.785 14 Si 0.994 3.006 15 H -0.253 1.253 16 H -0.271 1.271 17 H -0.252 1.252 18 C 0.205 3.795 19 N -0.862 5.862 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.116 0.884 23 H 0.159 0.841 24 H 0.153 0.847 25 H 0.130 0.870 26 H 0.281 0.719 27 H 0.406 0.594 28 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.840 1.389 0.425 12.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.257 6.257 3 C -0.031 4.031 4 C -0.169 4.169 5 C -0.180 4.180 6 C -0.100 4.100 7 C -0.219 4.219 8 C 0.278 3.722 9 O -0.483 6.483 10 C -0.572 4.572 11 H 0.111 0.889 12 C -0.194 4.194 13 N -0.413 5.413 14 Si 0.813 3.187 15 H -0.177 1.177 16 H -0.195 1.195 17 H -0.176 1.176 18 C 0.096 3.904 19 N -0.412 5.412 20 H 0.081 0.919 21 H 0.080 0.920 22 H 0.135 0.865 23 H 0.176 0.824 24 H 0.171 0.829 25 H 0.148 0.852 26 H 0.092 0.908 27 H 0.249 0.751 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -12.257 0.628 0.354 12.278 hybrid contribution 0.570 0.151 0.053 0.592 sum -11.687 0.778 0.407 11.720 Atomic orbital electron populations 1.23257 0.76711 1.05139 1.02020 1.85914 1.23188 1.26213 1.90412 1.18506 0.89651 0.86123 1.08826 1.21355 1.00565 0.91043 1.03938 1.20943 0.93520 0.97936 1.05612 1.21308 0.94066 0.97208 0.97454 1.20899 0.97514 0.92114 1.11352 1.18578 0.85664 0.90215 0.77762 1.90060 1.66272 1.38922 1.53059 1.21344 0.92963 0.95823 1.47076 0.88862 1.27225 0.98296 1.02540 0.91357 1.70076 1.07233 1.32380 1.31655 0.85112 0.76881 0.76181 0.80532 1.17663 1.19505 1.17566 1.17817 0.88412 0.87915 0.96211 1.43231 1.11800 1.04822 1.81395 0.91908 0.91953 0.86540 0.82367 0.82906 0.85242 0.90829 0.75125 0.77935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.57 15 2 O -0.34 -11.04 9.75 -93.72 -0.91 -11.95 15 3 C 0.02 0.64 6.70 22.57 0.15 0.80 15 4 C -0.15 -4.69 9.04 22.42 0.20 -4.48 15 5 C -0.16 -5.23 10.02 22.26 0.22 -5.01 15 6 C -0.08 -3.38 9.42 22.54 0.21 -3.17 15 7 C -0.21 -10.68 5.90 -19.88 -0.12 -10.79 15 8 C 0.38 22.28 6.89 25.57 0.18 22.46 15 9 O -0.59 -38.03 12.19 -4.81 -0.06 -38.09 15 10 C -0.54 -30.51 8.85 23.65 0.21 -30.30 15 11 H 0.09 4.70 6.06 -2.91 -0.02 4.68 15 12 C 0.02 1.35 5.50 85.39 0.47 1.82 15 13 N -0.78 -46.07 11.73 21.88 0.26 -45.82 15 14 Si 0.99 39.35 29.56 68.60 2.03 41.38 15 15 H -0.25 -9.46 7.11 99.48 0.71 -8.75 15 16 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 17 H -0.25 -9.39 7.11 99.48 0.71 -8.69 15 18 C 0.21 9.54 6.79 38.87 0.26 9.81 15 19 N -0.86 -39.60 8.92 -50.50 -0.45 -40.05 15 20 H 0.06 1.09 7.66 -2.39 -0.02 1.07 15 21 H 0.06 1.09 7.65 -2.39 -0.02 1.07 15 22 H 0.12 1.71 8.14 -2.38 -0.02 1.69 15 23 H 0.16 3.53 6.26 -2.91 -0.02 3.51 15 24 H 0.15 3.72 8.06 -2.91 -0.02 3.69 15 25 H 0.13 5.14 6.24 -2.91 -0.02 5.12 15 26 H 0.28 14.82 8.29 -92.71 -0.77 14.05 15 27 H 0.41 21.13 5.35 -94.29 -0.50 20.63 15 28 H 0.39 15.45 8.20 -92.70 -0.76 14.69 15 Total: -1.00 -72.30 244.29 3.72 -68.58 By element: Atomic # 1 Polarization: 43.29 SS G_CDS: -0.05 Total: 43.25 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 2.90 Total: -17.30 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -0.19 Total: -85.87 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -0.97 Total: -50.04 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 2.03 Total: 41.38 kcal Total: -72.30 3.72 -68.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260816710.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.927 kcal (2) G-P(sol) polarization free energy of solvation -72.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds