Wall clock time and date at job start Mon Mar 30 2020 02:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.31954 * 118.99281 * 269.73558 * 10 9 7 12 12 C 1.32148 * 120.71843 * 179.71966 * 11 10 9 13 13 C 1.38338 * 119.22993 * 0.53167 * 12 11 10 14 14 C 1.39041 * 118.72472 * 359.73506 * 13 12 11 15 15 N 1.38546 * 120.70403 * 179.97438 * 14 13 12 16 16 N 1.31762 * 118.98963 * 89.99659 * 10 9 7 17 17 C 1.50756 * 107.49240 * 179.73652 * 13 12 11 18 18 O 1.44019 * 105.92485 * 17.50732 * 17 13 12 19 19 C 1.43996 * 104.92600 * 331.86725 * 18 17 13 20 20 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 22 22 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 23 23 H 0.97002 * 120.00278 * 180.02562 * 15 14 13 24 24 H 0.97000 * 120.00066 * 0.02562 * 15 14 13 25 25 H 1.09010 * 110.15761 * 136.61504 * 17 13 12 26 26 H 1.08998 * 110.16203 * 258.31449 * 17 13 12 27 27 H 1.09009 * 110.14492 * 147.29822 * 19 18 17 28 28 H 1.09001 * 110.15061 * 268.96174 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2300 -3.6447 0.0133 11 7 2.6468 -4.1374 -1.1377 12 6 3.5093 -5.1381 -1.1709 13 6 3.9663 -5.6758 0.0189 14 6 3.5048 -5.1390 1.2157 15 7 3.9351 -5.6463 2.4310 16 7 2.6397 -4.1270 1.1690 17 6 4.9205 -6.7911 -0.3248 18 8 5.2933 -6.5825 -1.7002 19 6 4.1677 -5.9061 -2.2910 20 1 -0.4851 -0.8400 -0.0004 21 1 0.6205 -2.5547 0.8933 22 1 0.6280 -2.5591 -0.8867 23 1 3.6063 -5.2643 3.2598 24 1 4.5652 -6.3834 2.4531 25 1 5.8019 -6.7420 0.3148 26 1 4.4271 -7.7563 -0.2104 27 1 4.5070 -5.2205 -3.0676 28 1 3.4710 -6.6322 -2.7100 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260820916.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:26 Heat of formation + Delta-G solvation = 4.704830 kcal Electronic energy + Delta-G solvation = -14513.440480 eV Core-core repulsion = 11950.469382 eV Total energy + Delta-G solvation = -2562.971098 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.18203 -38.42931 -35.56378 -33.67439 -32.30938 -30.61505 -29.00062 -27.89803 -24.70140 -23.32935 -21.72135 -21.30737 -18.31511 -17.24046 -16.65065 -16.29148 -15.99397 -15.64786 -14.34984 -14.01694 -13.81170 -13.54337 -13.28625 -12.63723 -12.50626 -12.07109 -11.54633 -11.33206 -10.79859 -10.62913 -10.37857 -10.08805 -9.95059 -9.26392 -8.71233 -8.67638 -8.38600 -7.99476 -6.41299 -4.10713 1.36517 1.77085 3.45236 3.47634 3.50139 3.66197 3.86938 3.92982 4.26507 4.49804 4.56281 4.86547 5.18219 5.29909 5.36018 5.38503 5.51428 5.60784 5.82533 5.92057 6.49445 6.69688 7.04948 7.12430 7.28087 7.36188 7.88090 8.00271 8.37102 8.79186 8.88117 9.57036 10.99394 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037866 B = 0.007406 C = 0.006937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.270542 B = 3779.577727 C = 4035.361586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.021 3.979 3 Si 1.074 2.926 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.288 1.288 7 C -0.585 4.585 8 H 0.048 0.952 9 C 0.068 3.932 10 C 0.416 3.584 11 N -0.535 5.535 12 C 0.167 3.833 13 C -0.353 4.353 14 C 0.463 3.537 15 N -0.841 5.841 16 N -0.567 5.567 17 C 0.120 3.880 18 O -0.359 6.359 19 C 0.103 3.897 20 H 0.269 0.731 21 H 0.040 0.960 22 H 0.042 0.958 23 H 0.407 0.593 24 H 0.406 0.594 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.363 -13.438 1.170 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.183 4.183 3 Si 0.901 3.099 4 H -0.213 1.213 5 H -0.206 1.206 6 H -0.214 1.214 7 C -0.624 4.624 8 H 0.066 0.934 9 C 0.029 3.971 10 C 0.152 3.848 11 N -0.253 5.253 12 C 0.019 3.981 13 C -0.364 4.364 14 C 0.219 3.781 15 N -0.385 5.385 16 N -0.290 5.290 17 C 0.042 3.958 18 O -0.277 6.277 19 C 0.026 3.974 20 H 0.080 0.920 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.236 0.764 24 H 0.236 0.764 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.706 -11.105 1.034 13.557 hybrid contribution 0.832 -2.509 0.597 2.710 sum 8.537 -13.614 1.632 16.152 Atomic orbital electron populations 1.70785 1.06740 1.30628 1.46171 1.25856 0.96453 1.02464 0.93498 0.83473 0.74831 0.74940 0.76610 1.21323 1.20563 1.21423 1.21634 0.94102 0.90180 1.56486 0.93411 1.18372 0.91876 0.88326 0.98508 1.23907 0.89911 0.90671 0.80358 1.67634 1.14783 1.11673 1.31223 1.22310 0.90660 0.90425 0.94719 1.21587 1.11757 1.07582 0.95462 1.17863 0.87647 0.87618 0.85017 1.42076 1.51356 1.40054 1.05044 1.68179 1.16342 1.12912 1.31576 1.21212 0.96436 0.94702 0.83411 1.89106 1.38024 1.78197 1.22333 1.21593 0.88013 0.94560 0.93226 0.92014 0.94166 0.93977 0.76355 0.76449 0.89506 0.91349 0.87122 0.89251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.56 13.65 55.43 0.76 -26.80 15 2 C 0.02 0.62 5.46 -17.82 -0.10 0.53 15 3 Si 1.07 25.67 29.90 -169.99 -5.08 20.58 15 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.58 -17.15 9.09 -34.44 -0.31 -17.46 15 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 15 9 C 0.07 1.83 4.71 -29.04 -0.14 1.69 15 10 C 0.42 10.12 6.83 -157.08 -1.07 9.05 15 11 N -0.53 -12.15 10.34 -6.99 -0.07 -12.22 15 12 C 0.17 3.12 7.56 -82.31 -0.62 2.49 15 13 C -0.35 -5.89 6.29 -104.26 -0.66 -6.54 15 14 C 0.46 8.24 7.82 -154.80 -1.21 7.03 15 15 N -0.84 -10.36 9.06 31.16 0.28 -10.08 15 16 N -0.57 -12.58 10.37 -10.02 -0.10 -12.68 15 17 C 0.12 1.50 7.43 36.03 0.27 1.77 15 18 O -0.36 -5.03 11.73 -35.23 -0.41 -5.44 15 19 C 0.10 1.46 7.63 36.12 0.28 1.74 15 20 H 0.27 8.09 7.22 -40.82 -0.29 7.80 15 21 H 0.04 1.10 8.00 -51.93 -0.42 0.69 15 22 H 0.04 1.16 8.01 -51.93 -0.42 0.74 15 23 H 0.41 4.65 8.95 -40.82 -0.37 4.29 15 24 H 0.41 3.52 8.67 -40.82 -0.35 3.16 15 25 H 0.09 0.90 8.14 -51.92 -0.42 0.48 15 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.11 1.45 8.14 -51.92 -0.42 1.03 15 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 15 LS Contribution 250.37 15.07 3.77 3.77 Total: -1.00 -33.89 250.37 -7.16 -41.06 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.74 Total: 1.53 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -3.57 Total: 0.29 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.86 Total: -61.79 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.41 Total: -5.44 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.89 -7.16 -41.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260820916.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.760 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds