Wall clock time and date at job start Mon Mar 30 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.40040 * 110.99814 * 2 1 4 4 C 1.39370 * 129.92071 * 40.10655 * 3 2 1 5 5 C 1.39250 * 119.86835 * 179.82208 * 4 3 2 6 6 F 1.35108 * 119.76262 * 179.97438 * 5 4 3 7 7 C 1.38529 * 120.34149 * 359.93499 * 5 4 3 8 8 C 1.38259 * 119.85982 * 0.15075 * 7 5 4 9 9 C 1.37942 * 120.10983 * 0.02562 * 8 7 5 10 10 C 1.51579 * 131.53504 * 179.72067 * 9 8 7 11 11 C 1.47903 * 111.00216 * 239.98709 * 2 1 3 12 12 H 1.08995 * 110.77897 * 267.29148 * 11 2 1 13 13 C 1.50697 * 110.77856 * 30.72715 * 11 2 1 14 14 H 1.07999 * 120.00401 * 51.70924 * 13 11 2 15 15 C 1.37878 * 119.99895 * 231.71724 * 13 11 2 16 16 N 1.31519 * 119.99897 * 6.19296 * 15 13 11 17 17 Si 1.86797 * 120.00144 * 186.19589 * 15 13 11 18 18 H 1.48506 * 109.47047 * 89.99672 * 17 15 13 19 19 H 1.48498 * 109.47268 * 209.99597 * 17 15 13 20 20 H 1.48503 * 109.47197 * 330.00050 * 17 15 13 21 21 H 1.09006 * 109.46825 * 173.83954 * 1 2 3 22 22 H 1.08992 * 109.47079 * 293.83923 * 1 2 3 23 23 H 1.09000 * 109.47294 * 53.84391 * 1 2 3 24 24 H 1.08003 * 119.90595 * 359.66356 * 4 3 2 25 25 H 1.08009 * 120.06982 * 180.12854 * 7 5 4 26 26 H 1.07999 * 119.94880 * 179.97438 * 8 7 5 27 27 H 1.08999 * 110.74264 * 77.89354 * 10 9 8 28 28 H 1.09001 * 110.74314 * 314.73942 * 10 9 8 29 29 H 0.96994 * 119.99954 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9708 1.3074 0.0000 4 6 1.5281 2.4353 0.6886 5 6 2.1952 3.6479 0.5349 6 9 1.7639 4.7401 1.2030 7 6 3.2982 3.7391 -0.2983 8 6 3.7376 2.6215 -0.9834 9 6 3.0793 1.4179 -0.8387 10 6 3.3272 0.0561 -1.4565 11 6 1.9991 -0.6907 -1.1956 12 1 2.1826 -1.7440 -0.9841 13 6 1.0600 -0.5340 -2.3638 14 1 0.7144 0.4480 -2.6510 15 6 0.6418 -1.6446 -3.0658 16 7 0.9628 -2.8483 -2.6443 17 14 -0.3805 -1.4395 -4.6156 18 1 0.5194 -1.3414 -5.7929 19 1 -1.2783 -2.6116 -4.7752 20 1 -1.1954 -0.2024 -4.5111 21 1 -0.3633 -1.0218 -0.1103 22 1 -0.3633 0.4153 0.9399 23 1 -0.3634 0.6063 -0.8297 24 1 0.6674 2.3667 1.3374 25 1 3.8136 4.6813 -0.4127 26 1 4.5971 2.6910 -1.6337 27 1 4.1566 -0.4478 -0.9602 28 1 3.5165 0.1461 -2.5262 29 1 0.6689 -3.6296 -3.1383 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260960743.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:22 Heat of formation + Delta-G solvation = -28.671223 kcal Electronic energy + Delta-G solvation = -14808.051783 eV Core-core repulsion = 12223.713429 eV Total energy + Delta-G solvation = -2584.338354 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.82400 -41.39492 -37.47778 -34.65892 -33.30976 -30.87736 -29.65589 -27.08569 -26.28570 -23.42506 -22.23919 -21.66984 -18.92493 -17.98505 -17.61609 -16.60551 -16.53845 -16.44675 -15.65502 -15.51448 -15.11989 -14.49925 -14.19382 -13.99745 -13.51124 -13.16326 -12.86334 -12.74761 -12.65306 -12.39575 -12.20871 -11.85633 -11.67019 -11.54635 -10.78730 -10.53132 -9.57358 -8.62965 -8.16155 -6.39565 0.28490 0.42444 1.37846 1.40711 1.49654 2.34724 2.61351 2.92153 3.19298 3.61571 3.80164 4.06144 4.10558 4.37172 4.42676 4.64470 4.71999 4.73642 4.86414 5.06643 5.12803 5.14856 5.27620 5.28730 5.43759 5.62341 5.64760 5.95011 5.98780 6.29297 6.49622 6.79597 7.29476 8.79984 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.039188 B = 0.008450 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.334205 B = 3312.742639 C = 3366.898265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.496 5.496 3 C 0.122 3.878 4 C -0.199 4.199 5 C 0.106 3.894 6 F -0.144 7.144 7 C -0.182 4.182 8 C -0.056 4.056 9 C -0.157 4.157 10 C -0.078 4.078 11 C 0.186 3.814 12 H 0.065 0.935 13 C -0.538 4.538 14 H 0.046 0.954 15 C 0.035 3.965 16 N -0.912 5.912 17 Si 0.954 3.046 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.272 1.272 21 H 0.054 0.946 22 H 0.069 0.931 23 H 0.030 0.970 24 H 0.134 0.866 25 H 0.162 0.838 26 H 0.155 0.845 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 9.181 2.612 9.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.209 5.209 3 C 0.021 3.979 4 C -0.221 4.221 5 C 0.086 3.914 6 F -0.122 7.122 7 C -0.202 4.202 8 C -0.074 4.074 9 C -0.160 4.160 10 C -0.116 4.116 11 C 0.082 3.918 12 H 0.083 0.917 13 C -0.577 4.577 14 H 0.064 0.936 15 C -0.168 4.168 16 N -0.549 5.549 17 Si 0.779 3.221 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.197 1.197 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.049 0.951 24 H 0.152 0.848 25 H 0.180 0.820 26 H 0.173 0.827 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.955 8.618 3.058 9.610 hybrid contribution -1.001 0.084 -1.128 1.510 sum 1.954 8.703 1.930 9.126 Atomic orbital electron populations 1.21974 0.85955 1.01548 0.99561 1.60982 1.09796 1.09726 1.40360 1.19909 0.95394 0.89064 0.93541 1.20599 1.04222 0.90564 1.06736 1.17644 0.96009 0.82282 0.95474 1.91448 1.89529 1.52288 1.78978 1.21101 0.97851 1.00933 1.00316 1.20487 0.99209 0.89615 0.98122 1.21059 0.98689 0.96572 0.99709 1.21485 0.98598 0.91456 1.00053 1.20574 0.91158 0.95160 0.84864 0.91671 1.21318 1.29203 0.92826 1.14329 0.93562 1.25666 0.96228 0.94726 1.00134 1.69983 1.46534 0.98381 1.40033 0.85628 0.78749 0.77761 0.80000 1.19590 1.20574 1.19664 0.92715 0.91277 0.95128 0.84849 0.82009 0.82693 0.91034 0.90999 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.37 8.21 127.69 1.05 3.42 15 2 N -0.50 -22.36 5.29 -693.42 -3.67 -26.03 15 3 C 0.12 4.99 5.89 38.39 0.23 5.21 15 4 C -0.20 -7.15 9.58 22.79 0.22 -6.93 15 5 C 0.11 3.40 7.32 22.58 0.17 3.57 15 6 F -0.14 -4.39 17.26 44.97 0.78 -3.62 15 7 C -0.18 -5.17 10.04 22.34 0.22 -4.95 15 8 C -0.06 -1.71 10.03 22.20 0.22 -1.49 15 9 C -0.16 -6.08 6.24 -19.36 -0.12 -6.20 15 10 C -0.08 -3.28 6.54 30.67 0.20 -3.08 15 11 C 0.19 9.14 3.55 44.51 0.16 9.30 15 12 H 0.07 3.60 7.03 -2.39 -0.02 3.58 15 13 C -0.54 -28.02 6.33 25.60 0.16 -27.86 15 14 H 0.05 2.48 7.45 -2.91 -0.02 2.46 15 15 C 0.03 1.82 5.45 84.65 0.46 2.28 15 16 N -0.91 -50.13 12.67 21.45 0.27 -49.86 15 17 Si 0.95 41.47 29.54 68.60 2.03 43.49 15 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 21 H 0.05 2.47 8.09 -2.38 -0.02 2.46 15 22 H 0.07 2.47 7.61 -2.39 -0.02 2.45 15 23 H 0.03 1.34 6.86 -2.39 -0.02 1.33 15 24 H 0.13 4.43 7.56 -2.91 -0.02 4.41 15 25 H 0.16 3.44 8.06 -2.91 -0.02 3.42 15 26 H 0.16 3.72 8.06 -2.91 -0.02 3.70 15 27 H 0.07 2.81 8.14 -2.39 -0.02 2.79 15 28 H 0.07 3.03 7.91 -2.39 -0.02 3.01 15 29 H 0.27 14.00 8.31 -92.71 -0.77 13.23 15 Total: -1.00 -56.44 250.35 3.52 -52.92 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 1.15 Total: 9.83 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 2.97 Total: -26.74 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -3.40 Total: -75.89 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.78 Total: -3.62 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Total: -56.44 3.52 -52.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260960743.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.249 kcal (2) G-P(sol) polarization free energy of solvation -56.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds