Wall clock time and date at job start Mon Mar 30 2020 04:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.40038 * 111.00176 * 2 1 4 4 C 1.39366 * 129.93151 * 320.06663 * 3 2 1 5 5 C 1.38130 * 120.17897 * 180.68453 * 4 3 2 6 6 F 1.35099 * 119.89221 * 180.02562 * 5 4 3 7 7 C 1.38533 * 120.20593 * 359.72755 * 5 4 3 8 8 C 1.38265 * 119.86218 * 0.40628 * 7 5 4 9 9 C 1.37942 * 120.11106 * 359.45115 * 8 7 5 10 10 C 1.51585 * 131.53173 * 180.93435 * 9 8 7 11 11 C 1.47914 * 110.99981 * 119.94531 * 2 1 3 12 12 H 1.08993 * 110.77979 * 92.32915 * 11 2 1 13 13 C 1.50697 * 110.77705 * 329.08073 * 11 2 1 14 14 H 1.08011 * 119.99855 * 299.40939 * 13 11 2 15 15 C 1.37873 * 120.00405 * 119.41198 * 13 11 2 16 16 N 1.31509 * 120.00389 * 173.60569 * 15 13 11 17 17 Si 1.86804 * 119.99748 * 353.61139 * 15 13 11 18 18 H 1.48497 * 109.47459 * 84.78139 * 17 15 13 19 19 H 1.48498 * 109.46961 * 204.78817 * 17 15 13 20 20 H 1.48510 * 109.47061 * 324.78304 * 17 15 13 21 21 H 1.09007 * 109.47275 * 66.31361 * 1 2 3 22 22 H 1.08996 * 109.47360 * 186.30724 * 1 2 3 23 23 H 1.08992 * 109.47308 * 306.31595 * 1 2 3 24 24 H 1.07999 * 119.90965 * 0.66124 * 4 3 2 25 25 H 1.08003 * 120.07110 * 180.13177 * 7 5 4 26 26 H 1.08000 * 119.94333 * 179.72676 * 8 7 5 27 27 H 1.08991 * 110.73672 * 282.23743 * 10 9 8 28 28 H 1.09005 * 110.73083 * 45.55747 * 10 9 8 29 29 H 0.97007 * 120.00134 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9708 1.3074 0.0000 4 6 1.5264 2.4362 -0.6860 5 6 2.1903 3.6394 -0.5468 6 9 1.7542 4.7302 -1.2140 7 6 3.2982 3.7327 0.2797 8 6 3.7452 2.6153 0.9605 9 6 3.0833 1.4125 0.8265 10 6 3.3299 0.0544 1.4530 11 6 1.9990 -0.6893 1.1966 12 1 2.1763 -1.7444 0.9882 13 6 1.0621 -0.5273 2.3657 14 1 0.8329 0.4590 2.7414 15 6 0.4976 -1.6381 2.9559 16 7 -0.2183 -1.5085 4.0514 17 14 0.7498 -3.3274 2.1994 18 1 2.0352 -3.8971 2.6774 19 1 -0.3669 -4.2207 2.5997 20 1 0.7815 -3.2074 0.7195 21 1 -0.3634 0.4129 -0.9411 22 1 -0.3634 -1.0214 0.1129 23 1 -0.3633 0.6086 0.8280 24 1 0.6609 2.3698 -1.3284 25 1 3.8143 4.6751 0.3886 26 1 4.6114 2.6855 1.6018 27 1 4.1576 -0.4540 0.9587 28 1 3.5181 0.1511 2.5223 29 1 -0.6151 -2.2902 4.4668 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260961300.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:29 Heat of formation + Delta-G solvation = -10.480025 kcal Electronic energy + Delta-G solvation = -14860.363445 eV Core-core repulsion = 12276.813921 eV Total energy + Delta-G solvation = -2583.549524 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.50983 -39.99674 -36.08559 -32.69826 -31.90083 -29.50607 -28.46371 -25.35763 -24.70989 -21.78015 -20.86520 -19.86461 -17.51778 -16.66710 -16.16281 -15.22316 -15.16532 -14.60065 -14.16748 -13.87930 -13.50496 -13.12834 -12.69248 -12.64409 -12.02872 -11.71833 -11.34827 -11.25367 -11.02790 -10.79107 -10.45506 -10.14323 -10.01345 -9.86009 -8.98162 -8.85763 -8.21631 -6.99662 -6.35756 -4.40154 1.69174 1.78983 3.12796 3.22538 3.24226 4.01876 4.18049 4.43863 4.84570 5.13171 5.21739 5.36576 5.47951 5.77508 5.84301 6.06003 6.14738 6.23754 6.38594 6.45348 6.48432 6.62121 6.75745 6.81698 6.83525 7.01925 7.30456 7.31923 7.80341 7.96711 8.21703 8.70350 9.24797 10.75654 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045453 B = 0.008761 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.877191 B = 3195.301697 C = 3351.487813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.488 5.488 3 C 0.152 3.848 4 C -0.192 4.192 5 C 0.113 3.887 6 F -0.149 7.149 7 C -0.198 4.198 8 C -0.060 4.060 9 C -0.139 4.139 10 C -0.081 4.081 11 C 0.168 3.832 12 H 0.067 0.933 13 C -0.533 4.533 14 H 0.078 0.922 15 C 0.084 3.916 16 N -0.880 5.880 17 Si 0.873 3.127 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.261 1.261 21 H 0.045 0.955 22 H 0.067 0.933 23 H 0.055 0.945 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 4.387 -6.581 9.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.200 5.200 3 C 0.050 3.950 4 C -0.214 4.214 5 C 0.093 3.907 6 F -0.127 7.127 7 C -0.218 4.218 8 C -0.078 4.078 9 C -0.142 4.142 10 C -0.119 4.119 11 C 0.065 3.935 12 H 0.085 0.915 13 C -0.571 4.571 14 H 0.096 0.904 15 C -0.122 4.122 16 N -0.515 5.515 17 Si 0.700 3.300 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.185 1.185 21 H 0.063 0.937 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.143 0.857 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.952 3.916 -6.899 9.352 hybrid contribution -0.325 -0.364 0.167 0.516 sum 4.627 3.553 -6.732 8.908 Atomic orbital electron populations 1.22110 0.85937 1.02747 0.99524 1.61160 1.09703 1.08888 1.40256 1.19549 0.94320 0.89053 0.92058 1.20202 1.03646 0.90772 1.06810 1.17214 0.95561 0.82712 0.95229 1.91435 1.89389 1.52862 1.79052 1.20721 0.98902 0.99821 1.02348 1.20143 0.98854 0.90752 0.98089 1.20745 0.98074 0.96007 0.99419 1.21575 0.98751 0.90921 1.00667 1.20891 0.91753 0.94605 0.86257 0.91545 1.21158 1.27179 0.95664 1.13141 0.90414 1.25107 0.93858 0.99113 0.94149 1.69904 1.32686 1.30949 1.17989 0.86900 0.78492 0.84011 0.80601 1.19647 1.21116 1.18525 0.93651 0.91427 0.92674 0.85665 0.85564 0.85813 0.91646 0.89841 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 8.21 60.06 0.49 1.37 15 2 N -0.49 -10.45 5.30 -170.66 -0.90 -11.35 15 3 C 0.15 3.09 5.87 -83.41 -0.49 2.60 15 4 C -0.19 -3.54 9.52 -39.20 -0.37 -3.92 15 5 C 0.11 1.95 7.28 -39.51 -0.29 1.67 15 6 F -0.15 -2.48 17.26 2.25 0.04 -2.44 15 7 C -0.20 -3.17 10.04 -39.46 -0.40 -3.56 15 8 C -0.06 -0.99 10.03 -39.68 -0.40 -1.39 15 9 C -0.14 -2.71 6.22 -104.02 -0.65 -3.35 15 10 C -0.08 -1.61 6.56 -26.61 -0.17 -1.79 15 11 C 0.17 3.79 3.15 -67.47 -0.21 3.57 15 12 H 0.07 1.50 4.97 -51.93 -0.26 1.24 15 13 C -0.53 -13.82 6.69 -34.44 -0.23 -14.05 15 14 H 0.08 2.27 8.00 -52.48 -0.42 1.85 15 15 C 0.08 2.22 5.47 -17.82 -0.10 2.12 15 16 N -0.88 -24.98 13.96 55.43 0.77 -24.21 15 17 Si 0.87 19.82 26.93 -169.99 -4.58 15.25 15 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 19 H -0.29 -6.49 7.11 56.52 0.40 -6.08 15 20 H -0.26 -5.75 6.84 56.52 0.39 -5.37 15 21 H 0.04 0.79 7.61 -51.93 -0.40 0.40 15 22 H 0.07 1.41 8.09 -51.93 -0.42 0.99 15 23 H 0.05 1.23 7.06 -51.93 -0.37 0.86 15 24 H 0.13 2.13 7.55 -52.49 -0.40 1.73 15 25 H 0.13 1.67 8.06 -52.48 -0.42 1.25 15 26 H 0.12 1.71 8.06 -52.49 -0.42 1.28 15 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 15 28 H 0.08 1.67 7.91 -51.93 -0.41 1.26 15 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 247.30 15.07 3.73 3.73 Total: -1.00 -27.56 247.30 -6.84 -34.40 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.08 Total: 1.35 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: -2.81 Total: -16.73 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.13 Total: -35.55 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.58 Total: 15.25 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -27.56 -6.84 -34.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961300.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.919 kcal (2) G-P(sol) polarization free energy of solvation -27.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds