Wall clock time and date at job start Mon Mar 30 2020 04:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.40038 * 111.00176 * 2 1 4 4 C 1.39366 * 129.93151 * 320.06663 * 3 2 1 5 5 C 1.38130 * 120.17897 * 180.68453 * 4 3 2 6 6 F 1.35099 * 119.89221 * 180.02562 * 5 4 3 7 7 C 1.38533 * 120.20593 * 359.72755 * 5 4 3 8 8 C 1.38265 * 119.86218 * 0.40628 * 7 5 4 9 9 C 1.37942 * 120.11106 * 359.45115 * 8 7 5 10 10 C 1.51585 * 131.53173 * 180.93435 * 9 8 7 11 11 C 1.47914 * 110.99981 * 119.94531 * 2 1 3 12 12 H 1.08993 * 110.77979 * 92.32915 * 11 2 1 13 13 C 1.50697 * 110.77705 * 329.08073 * 11 2 1 14 14 H 1.08011 * 119.99855 * 299.40939 * 13 11 2 15 15 C 1.37873 * 120.00405 * 119.41198 * 13 11 2 16 16 N 1.31509 * 120.00389 * 173.60569 * 15 13 11 17 17 Si 1.86804 * 119.99748 * 353.61139 * 15 13 11 18 18 H 1.48497 * 109.47459 * 84.78139 * 17 15 13 19 19 H 1.48498 * 109.46961 * 204.78817 * 17 15 13 20 20 H 1.48510 * 109.47061 * 324.78304 * 17 15 13 21 21 H 1.09007 * 109.47275 * 66.31361 * 1 2 3 22 22 H 1.08996 * 109.47360 * 186.30724 * 1 2 3 23 23 H 1.08992 * 109.47308 * 306.31595 * 1 2 3 24 24 H 1.07999 * 119.90965 * 0.66124 * 4 3 2 25 25 H 1.08003 * 120.07110 * 180.13177 * 7 5 4 26 26 H 1.08000 * 119.94333 * 179.72676 * 8 7 5 27 27 H 1.08991 * 110.73672 * 282.23743 * 10 9 8 28 28 H 1.09005 * 110.73083 * 45.55747 * 10 9 8 29 29 H 0.97007 * 120.00134 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9708 1.3074 0.0000 4 6 1.5264 2.4362 -0.6860 5 6 2.1903 3.6394 -0.5468 6 9 1.7542 4.7302 -1.2140 7 6 3.2982 3.7327 0.2797 8 6 3.7452 2.6153 0.9605 9 6 3.0833 1.4125 0.8265 10 6 3.3299 0.0544 1.4530 11 6 1.9990 -0.6893 1.1966 12 1 2.1763 -1.7444 0.9882 13 6 1.0621 -0.5273 2.3657 14 1 0.8329 0.4590 2.7414 15 6 0.4976 -1.6381 2.9559 16 7 -0.2183 -1.5085 4.0514 17 14 0.7498 -3.3274 2.1994 18 1 2.0352 -3.8971 2.6774 19 1 -0.3669 -4.2207 2.5997 20 1 0.7815 -3.2074 0.7195 21 1 -0.3634 0.4129 -0.9411 22 1 -0.3634 -1.0214 0.1129 23 1 -0.3633 0.6086 0.8280 24 1 0.6609 2.3698 -1.3284 25 1 3.8143 4.6751 0.3886 26 1 4.6114 2.6855 1.6018 27 1 4.1576 -0.4540 0.9587 28 1 3.5181 0.1511 2.5223 29 1 -0.6151 -2.2902 4.4668 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260961300.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:28 Heat of formation + Delta-G solvation = -27.175681 kcal Electronic energy + Delta-G solvation = -14861.087423 eV Core-core repulsion = 12276.813921 eV Total energy + Delta-G solvation = -2584.273502 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.85385 -41.52916 -37.59918 -34.65136 -33.46235 -30.99934 -30.10594 -27.07663 -26.35816 -23.32227 -22.29702 -21.53206 -19.45338 -18.13022 -17.66390 -16.61002 -16.57478 -16.40831 -15.69379 -15.48991 -15.08482 -14.71258 -14.38493 -14.20127 -13.61149 -13.38755 -12.87777 -12.84118 -12.70973 -12.37050 -11.94466 -11.91234 -11.77598 -11.67565 -10.87107 -10.56626 -9.63154 -8.57770 -8.39513 -6.47964 0.27754 0.38737 1.33686 1.37267 1.46447 2.27390 2.54946 2.85889 3.16495 3.57250 3.73045 3.97000 4.07897 4.32954 4.35850 4.54217 4.55445 4.68699 4.80031 4.90420 5.03768 5.11431 5.14471 5.23415 5.32263 5.40932 5.62483 5.89130 6.11811 6.17831 6.38500 6.60633 7.20355 8.76134 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045453 B = 0.008761 C = 0.008352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.877191 B = 3195.301697 C = 3351.487813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.491 5.491 3 C 0.121 3.879 4 C -0.197 4.197 5 C 0.106 3.894 6 F -0.144 7.144 7 C -0.183 4.183 8 C -0.056 4.056 9 C -0.157 4.157 10 C -0.077 4.077 11 C 0.163 3.837 12 H 0.070 0.930 13 C -0.526 4.526 14 H 0.029 0.971 15 C 0.032 3.968 16 N -0.932 5.932 17 Si 0.937 3.063 18 H -0.258 1.258 19 H -0.286 1.286 20 H -0.249 1.249 21 H 0.074 0.926 22 H 0.059 0.941 23 H 0.024 0.976 24 H 0.134 0.866 25 H 0.162 0.838 26 H 0.157 0.843 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 4.765 -7.943 11.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.203 5.203 3 C 0.020 3.980 4 C -0.219 4.219 5 C 0.086 3.914 6 F -0.123 7.123 7 C -0.202 4.202 8 C -0.074 4.074 9 C -0.160 4.160 10 C -0.115 4.115 11 C 0.059 3.941 12 H 0.088 0.912 13 C -0.565 4.565 14 H 0.047 0.953 15 C -0.169 4.169 16 N -0.569 5.569 17 Si 0.761 3.239 18 H -0.182 1.182 19 H -0.212 1.212 20 H -0.173 1.173 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.043 0.957 24 H 0.151 0.849 25 H 0.179 0.821 26 H 0.174 0.826 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.669 4.328 -8.284 11.481 hybrid contribution -0.836 -0.269 0.579 1.052 sum 5.832 4.059 -7.705 10.482 Atomic orbital electron populations 1.22055 0.86055 1.01822 0.99818 1.61119 1.09669 1.10030 1.39506 1.19709 0.95333 0.89140 0.93813 1.20353 1.04023 0.90813 1.06665 1.17354 0.95989 0.82460 0.95573 1.91451 1.89408 1.52423 1.78983 1.21145 0.97788 1.00994 1.00294 1.20515 0.99374 0.89615 0.97920 1.20946 0.98512 0.96815 0.99745 1.21477 0.97975 0.91470 1.00595 1.20865 0.92335 0.95503 0.85405 0.91199 1.21154 1.27705 0.93458 1.14172 0.95261 1.25891 0.93529 1.03110 0.94350 1.70039 1.34774 1.32163 1.19960 0.85882 0.78792 0.78991 0.80269 1.18209 1.21198 1.17255 0.90752 0.92196 0.95676 0.84858 0.82059 0.82552 0.89044 0.90630 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.01 8.21 127.69 1.05 3.06 15 2 N -0.49 -20.73 5.30 -693.85 -3.67 -24.40 15 3 C 0.12 4.78 5.87 38.28 0.22 5.01 15 4 C -0.20 -6.98 9.52 22.52 0.21 -6.77 15 5 C 0.11 3.41 7.28 22.31 0.16 3.57 15 6 F -0.14 -4.42 17.26 44.97 0.78 -3.65 15 7 C -0.18 -5.17 10.04 22.35 0.22 -4.95 15 8 C -0.06 -1.68 10.03 22.21 0.22 -1.46 15 9 C -0.16 -5.85 6.22 -19.47 -0.12 -5.97 15 10 C -0.08 -2.98 6.56 30.67 0.20 -2.78 15 11 C 0.16 7.29 3.15 44.52 0.14 7.43 15 12 H 0.07 3.06 4.97 -2.39 -0.01 3.05 15 13 C -0.53 -28.09 6.69 25.60 0.17 -27.92 15 14 H 0.03 1.80 8.00 -2.91 -0.02 1.78 15 15 C 0.03 1.75 5.47 84.65 0.46 2.21 15 16 N -0.93 -54.74 13.96 21.44 0.30 -54.44 15 17 Si 0.94 40.91 26.93 68.60 1.85 42.76 15 18 H -0.26 -10.64 7.11 99.48 0.71 -9.93 15 19 H -0.29 -12.43 7.11 99.48 0.71 -11.73 15 20 H -0.25 -10.29 6.84 99.48 0.68 -9.61 15 21 H 0.07 2.56 7.61 -2.38 -0.02 2.54 15 22 H 0.06 2.50 8.09 -2.39 -0.02 2.48 15 23 H 0.02 1.15 7.06 -2.39 -0.02 1.13 15 24 H 0.13 4.37 7.55 -2.91 -0.02 4.35 15 25 H 0.16 3.45 8.06 -2.91 -0.02 3.42 15 26 H 0.16 3.65 8.06 -2.91 -0.02 3.62 15 27 H 0.09 3.01 8.14 -2.39 -0.02 2.99 15 28 H 0.08 2.98 7.91 -2.38 -0.02 2.96 15 29 H 0.27 14.86 8.31 -92.70 -0.77 14.09 15 Total: -1.00 -60.46 247.30 3.33 -57.13 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 1.13 Total: 11.16 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 2.95 Total: -28.56 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -3.37 Total: -78.85 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.78 Total: -3.65 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.85 Total: 42.76 kcal Total: -60.46 3.33 -57.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260961300.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.956 kcal (2) G-P(sol) polarization free energy of solvation -60.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds