Wall clock time and date at job start Mon Mar 30 2020 03:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86798 * 120.00064 * 2 1 4 4 H 1.48496 * 109.47407 * 239.99915 * 3 2 1 5 5 H 1.48496 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46989 * 119.99742 * 3 2 1 7 7 C 1.40112 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00297 * 179.97438 * 7 2 1 9 9 C 1.41545 * 119.99622 * 0.02562 * 7 2 1 10 10 N 1.33996 * 120.62631 * 359.97438 * 9 7 2 11 11 C 1.31907 * 120.41937 * 180.09570 * 10 9 7 12 12 O 1.35452 * 119.05592 * 180.02562 * 11 10 9 13 13 N 1.31773 * 121.82999 * 359.71407 * 11 10 9 14 14 C 1.32715 * 121.48034 * 0.48919 * 13 11 10 15 15 C 1.37472 * 119.26046 * 359.54217 * 14 13 11 16 16 C 1.50311 * 122.35776 * 180.45112 * 15 14 13 17 17 N 1.46732 * 110.21428 * 342.44355 * 16 15 14 18 18 C 1.47157 * 110.31292 * 52.29338 * 17 16 15 19 19 C 1.50570 * 119.19358 * 179.36003 * 14 13 11 20 20 H 0.96998 * 120.00090 * 0.02562 * 1 2 3 21 21 H 0.96706 * 113.99933 * 89.99077 * 12 11 10 22 22 H 1.09002 * 109.32179 * 222.26136 * 16 15 14 23 23 H 1.09002 * 109.32516 * 102.62622 * 16 15 14 24 24 H 1.00899 * 110.99956 * 288.82939 * 17 16 15 25 25 H 1.08999 * 109.61004 * 48.62765 * 18 17 16 26 26 H 1.09000 * 109.60915 * 168.96279 * 18 17 16 27 27 H 1.09007 * 109.40744 * 43.08720 * 19 14 13 28 28 H 1.08997 * 109.41250 * 283.32171 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2124 5 1 1.2757 2.7464 0.0006 6 1 3.0944 1.6964 1.2126 7 6 2.0073 -1.2134 -0.0005 8 1 3.0873 -1.2134 -0.0010 9 6 1.2996 -2.4392 -0.0016 10 7 -0.0403 -2.4538 -0.0017 11 6 -0.6957 -3.5985 -0.0008 12 8 -2.0501 -3.5811 -0.0013 13 7 -0.0694 -4.7579 -0.0055 14 6 1.2558 -4.8298 -0.0016 15 6 1.9917 -3.6687 -0.0022 16 6 3.4948 -3.6689 -0.0080 17 7 4.0032 -4.9826 0.4028 18 6 3.3844 -6.0453 -0.4054 19 6 1.9179 -6.1821 0.0074 20 1 -0.4850 0.8400 -0.0004 21 1 -2.4430 -3.5768 -0.8850 22 1 3.8583 -2.9090 0.6839 23 1 3.8517 -3.4421 -1.0127 24 1 3.8467 -5.1392 1.3871 25 1 3.4442 -5.7835 -1.4617 26 1 3.9052 -6.9870 -0.2319 27 1 1.4046 -6.8414 -0.6927 28 1 1.8619 -6.6062 1.0099 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261006094.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:38 Heat of formation + Delta-G solvation = 0.934521 kcal Electronic energy + Delta-G solvation = -14987.888364 eV Core-core repulsion = 12424.753774 eV Total energy + Delta-G solvation = -2563.134591 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.72336 -37.21712 -35.53428 -34.13090 -32.05090 -30.06273 -29.40339 -26.59639 -23.63101 -23.14729 -21.27269 -20.20380 -17.92076 -17.24218 -16.35230 -15.14572 -15.07087 -14.46034 -14.31961 -13.60299 -13.24069 -12.78881 -12.73429 -12.36186 -11.56275 -11.41307 -11.27614 -11.07235 -10.93218 -10.67940 -10.64439 -10.29102 -9.75681 -9.60692 -8.63680 -7.99926 -7.76427 -7.46986 -6.56404 -4.93225 2.41245 2.71263 2.98135 2.99880 3.10895 3.78245 4.38492 4.65907 4.86516 5.29780 5.48191 5.55512 5.69948 5.96236 6.09671 6.23577 6.28453 6.32533 6.45392 6.53392 6.74912 6.94927 7.12722 7.46197 7.50714 7.82278 7.86881 8.16555 8.49169 8.69378 8.99031 9.95426 10.08666 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027050 B = 0.011855 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.870457 B = 2361.320491 C = 3346.308291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.066 3.934 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.411 4.411 8 H 0.095 0.905 9 C 0.287 3.713 10 N -0.525 5.525 11 C 0.481 3.519 12 O -0.478 6.478 13 N -0.635 5.635 14 C 0.182 3.818 15 C -0.326 4.326 16 C 0.130 3.870 17 N -0.685 5.685 18 C 0.060 3.940 19 C -0.099 4.099 20 H 0.279 0.721 21 H 0.389 0.611 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.336 0.664 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.547 -3.184 -1.418 5.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.319 5.319 2 C -0.163 4.163 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.445 4.445 8 H 0.113 0.887 9 C 0.158 3.842 10 N -0.256 5.256 11 C 0.173 3.827 12 O -0.279 6.279 13 N -0.369 5.369 14 C 0.044 3.956 15 C -0.337 4.337 16 C 0.000 4.000 17 N -0.311 5.311 18 C -0.070 4.070 19 C -0.138 4.138 20 H 0.090 0.910 21 H 0.244 0.756 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.152 0.848 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.095 0.905 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.920 -2.986 -1.204 5.073 hybrid contribution -0.187 0.726 -0.120 0.759 sum 3.734 -2.260 -1.323 4.561 Atomic orbital electron populations 1.70088 1.07424 1.28674 1.25741 1.26205 0.95000 1.01581 0.93495 0.86279 0.80080 0.79774 0.80221 1.18578 1.20006 1.18583 1.19739 0.94651 0.88834 1.41242 0.88680 1.18462 0.86700 0.91647 0.87374 1.68928 1.08907 1.26110 1.21648 1.20154 0.84697 0.85032 0.92821 1.84606 1.14697 1.95874 1.32703 1.67092 1.10132 1.30758 1.28904 1.20013 0.88424 0.93579 0.93581 1.21345 0.97857 0.95108 1.19382 1.20371 0.89031 0.89807 1.00762 1.61141 1.58973 1.02768 1.08260 1.22018 0.91185 0.95229 0.98611 1.20957 0.96547 0.94160 1.02158 0.90970 0.75642 0.90469 0.91433 0.84758 0.91053 0.90739 0.90534 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.12 11.52 55.55 0.64 -17.48 15 2 C 0.07 1.59 5.50 -17.34 -0.10 1.49 15 3 Si 0.91 17.54 29.56 -169.99 -5.02 12.52 15 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 5 H -0.28 -5.20 7.11 56.52 0.40 -4.79 15 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 15 7 C -0.41 -10.34 8.69 -37.62 -0.33 -10.66 15 8 H 0.10 2.16 6.32 -52.49 -0.33 1.83 15 9 C 0.29 7.67 6.58 -84.58 -0.56 7.11 15 10 N -0.53 -14.80 8.08 -12.81 -0.10 -14.90 15 11 C 0.48 12.76 8.68 -92.08 -0.80 11.96 15 12 O -0.48 -11.24 13.64 -18.05 -0.25 -11.49 15 13 N -0.63 -16.09 10.31 -11.38 -0.12 -16.21 15 14 C 0.18 4.18 6.67 -82.55 -0.55 3.63 15 15 C -0.33 -7.68 5.84 -104.01 -0.61 -8.29 15 16 C 0.13 2.54 5.54 -5.26 -0.03 2.51 15 17 N -0.68 -11.36 6.96 -115.22 -0.80 -12.16 15 18 C 0.06 0.92 6.61 -3.70 -0.02 0.90 15 19 C -0.10 -1.74 6.10 -27.97 -0.17 -1.91 15 20 H 0.28 6.54 8.29 -40.82 -0.34 6.20 15 21 H 0.39 7.01 9.06 45.56 0.41 7.43 15 22 H 0.08 1.49 7.01 -51.93 -0.36 1.13 15 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.34 5.33 8.75 -39.29 -0.34 4.98 15 25 H 0.07 1.12 8.05 -51.93 -0.42 0.71 15 26 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 LS Contribution 241.64 15.07 3.64 3.64 Total: -1.00 -30.83 241.64 -7.04 -37.88 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -1.87 Total: 11.47 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -3.16 Total: 6.74 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.38 Total: -60.75 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.25 Total: -11.49 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.02 Total: 12.52 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.83 -7.04 -37.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006094.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.810 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds