Wall clock time and date at job start Mon Mar 30 2020 03:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86798 * 120.00064 * 2 1 4 4 H 1.48496 * 109.47407 * 239.99915 * 3 2 1 5 5 H 1.48496 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46989 * 119.99742 * 3 2 1 7 7 C 1.40112 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00297 * 179.97438 * 7 2 1 9 9 C 1.41545 * 119.99622 * 0.02562 * 7 2 1 10 10 N 1.33996 * 120.62631 * 359.97438 * 9 7 2 11 11 C 1.31907 * 120.41937 * 180.09570 * 10 9 7 12 12 O 1.35452 * 119.05592 * 180.02562 * 11 10 9 13 13 N 1.31773 * 121.82999 * 359.71407 * 11 10 9 14 14 C 1.32715 * 121.48034 * 0.48919 * 13 11 10 15 15 C 1.37472 * 119.26046 * 359.54217 * 14 13 11 16 16 C 1.50311 * 122.35776 * 180.45112 * 15 14 13 17 17 N 1.46732 * 110.21428 * 342.44355 * 16 15 14 18 18 C 1.47157 * 110.31292 * 52.29338 * 17 16 15 19 19 C 1.50570 * 119.19358 * 179.36003 * 14 13 11 20 20 H 0.96998 * 120.00090 * 0.02562 * 1 2 3 21 21 H 0.96706 * 113.99933 * 89.99077 * 12 11 10 22 22 H 1.09002 * 109.32179 * 222.26136 * 16 15 14 23 23 H 1.09002 * 109.32516 * 102.62622 * 16 15 14 24 24 H 1.00899 * 110.99956 * 288.82939 * 17 16 15 25 25 H 1.08999 * 109.61004 * 48.62765 * 18 17 16 26 26 H 1.09000 * 109.60915 * 168.96279 * 18 17 16 27 27 H 1.09007 * 109.40744 * 43.08720 * 19 14 13 28 28 H 1.08997 * 109.41250 * 283.32171 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2124 5 1 1.2757 2.7464 0.0006 6 1 3.0944 1.6964 1.2126 7 6 2.0073 -1.2134 -0.0005 8 1 3.0873 -1.2134 -0.0010 9 6 1.2996 -2.4392 -0.0016 10 7 -0.0403 -2.4538 -0.0017 11 6 -0.6957 -3.5985 -0.0008 12 8 -2.0501 -3.5811 -0.0013 13 7 -0.0694 -4.7579 -0.0055 14 6 1.2558 -4.8298 -0.0016 15 6 1.9917 -3.6687 -0.0022 16 6 3.4948 -3.6689 -0.0080 17 7 4.0032 -4.9826 0.4028 18 6 3.3844 -6.0453 -0.4054 19 6 1.9179 -6.1821 0.0074 20 1 -0.4850 0.8400 -0.0004 21 1 -2.4430 -3.5768 -0.8850 22 1 3.8583 -2.9090 0.6839 23 1 3.8517 -3.4421 -1.0127 24 1 3.8467 -5.1392 1.3871 25 1 3.4442 -5.7835 -1.4617 26 1 3.9052 -6.9870 -0.2319 27 1 1.4046 -6.8414 -0.6927 28 1 1.8619 -6.6062 1.0099 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261006094.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:37 Heat of formation + Delta-G solvation = -26.603613 kcal Electronic energy + Delta-G solvation = -14989.082507 eV Core-core repulsion = 12424.753774 eV Total energy + Delta-G solvation = -2564.328734 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.52308 -38.88672 -37.25655 -35.94592 -33.85566 -31.79391 -30.98834 -28.45264 -25.29043 -24.72224 -23.05795 -21.83224 -19.73240 -19.09243 -18.08637 -16.94830 -16.71065 -16.00158 -15.92309 -15.14158 -14.91996 -14.47595 -14.35090 -13.81168 -13.16682 -13.06884 -12.96416 -12.71982 -12.50573 -12.44303 -12.06926 -11.86661 -11.48160 -11.40824 -10.53434 -9.62153 -9.50794 -9.28367 -8.40335 -6.85111 0.54797 0.89951 1.40827 1.54759 1.55701 2.17227 2.60624 2.85260 3.47235 3.63365 3.80901 4.12221 4.29496 4.44792 4.52894 4.65493 4.77530 4.90643 4.96830 5.00243 5.08287 5.15601 5.46681 5.74373 5.99033 6.05073 6.35538 6.49919 6.63279 6.83247 7.13118 8.04337 8.28319 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027050 B = 0.011855 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.870457 B = 2361.320491 C = 3346.308291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.019 3.981 3 Si 0.995 3.005 4 H -0.251 1.251 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.430 4.430 8 H 0.114 0.886 9 C 0.249 3.751 10 N -0.562 5.562 11 C 0.461 3.539 12 O -0.485 6.485 13 N -0.647 5.647 14 C 0.164 3.836 15 C -0.334 4.334 16 C 0.140 3.860 17 N -0.674 5.674 18 C 0.066 3.934 19 C -0.092 4.092 20 H 0.284 0.716 21 H 0.408 0.592 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.343 0.657 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.575 -3.464 -1.459 7.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.205 4.205 3 Si 0.814 3.186 4 H -0.175 1.175 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.463 4.463 8 H 0.132 0.868 9 C 0.121 3.879 10 N -0.294 5.294 11 C 0.153 3.847 12 O -0.288 6.288 13 N -0.382 5.382 14 C 0.027 3.973 15 C -0.344 4.344 16 C 0.009 3.991 17 N -0.301 5.301 18 C -0.064 4.064 19 C -0.132 4.132 20 H 0.095 0.905 21 H 0.266 0.734 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.160 0.840 25 H 0.086 0.914 26 H 0.133 0.867 27 H 0.104 0.896 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.959 -3.309 -1.255 6.931 hybrid contribution -0.869 0.748 -0.114 1.152 sum 5.090 -2.561 -1.368 5.860 Atomic orbital electron populations 1.70208 1.09467 1.30046 1.26714 1.27269 0.95707 1.05353 0.92178 0.85057 0.78516 0.74340 0.80702 1.17465 1.19613 1.17671 1.20230 0.95685 0.89196 1.41218 0.86844 1.19084 0.86861 0.93674 0.88321 1.68890 1.10131 1.27118 1.23300 1.20457 0.85508 0.85423 0.93301 1.84535 1.13810 1.95877 1.34605 1.67229 1.11471 1.30051 1.29423 1.20922 0.87896 0.96046 0.92399 1.21787 1.00064 0.94284 1.18314 1.20274 0.86293 0.91587 1.00939 1.61155 1.58232 1.01769 1.08914 1.22133 0.89727 0.96424 0.98134 1.21077 0.97668 0.91127 1.03297 0.90479 0.73390 0.90511 0.91212 0.84026 0.91378 0.86731 0.89572 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.40 11.52 21.85 0.25 -39.15 15 2 C 0.02 0.93 5.50 85.32 0.47 1.40 15 3 Si 1.00 35.40 29.56 68.60 2.03 37.43 15 4 H -0.25 -8.44 7.11 99.48 0.71 -7.73 15 5 H -0.27 -9.39 7.11 99.48 0.71 -8.68 15 6 H -0.25 -8.59 7.11 99.48 0.71 -7.88 15 7 C -0.43 -21.74 8.69 23.54 0.20 -21.53 15 8 H 0.11 5.08 6.32 -2.91 -0.02 5.06 15 9 C 0.25 13.56 6.58 40.33 0.27 13.82 15 10 N -0.56 -32.66 8.08 -307.60 -2.48 -35.15 15 11 C 0.46 25.12 8.68 180.86 1.57 26.69 15 12 O -0.48 -23.39 13.64 -87.50 -1.19 -24.58 15 13 N -0.65 -33.05 10.31 -303.16 -3.13 -36.18 15 14 C 0.16 7.45 6.67 42.20 0.28 7.73 15 15 C -0.33 -15.69 5.84 -19.47 -0.11 -15.80 15 16 C 0.14 5.23 5.54 85.47 0.47 5.71 15 17 N -0.67 -20.39 6.96 -518.45 -3.61 -23.99 15 18 C 0.07 1.79 6.61 86.24 0.57 2.36 15 19 C -0.09 -3.04 6.10 29.79 0.18 -2.86 15 20 H 0.28 13.63 8.29 -92.71 -0.77 12.86 15 21 H 0.41 15.16 9.06 -74.05 -0.67 14.49 15 22 H 0.08 2.86 7.01 -2.39 -0.02 2.85 15 23 H 0.07 2.58 8.14 -2.39 -0.02 2.56 15 24 H 0.34 9.84 8.75 -89.69 -0.78 9.06 15 25 H 0.07 1.93 8.05 -2.39 -0.02 1.91 15 26 H 0.11 2.30 8.14 -2.39 -0.02 2.28 15 27 H 0.09 2.69 8.14 -2.38 -0.02 2.67 15 28 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 Total: -1.00 -67.63 241.64 -4.47 -72.09 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.24 Total: 32.02 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 3.90 Total: 17.52 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -8.97 Total: -134.47 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -1.19 Total: -24.58 kcal Atomic # 14 Polarization: 35.40 SS G_CDS: 2.03 Total: 37.43 kcal Total: -67.63 -4.47 -72.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261006094.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.490 kcal (2) G-P(sol) polarization free energy of solvation -67.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds