Wall clock time and date at job start Mon Mar 30 2020 02:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 C 1.52999 * 109.47522 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.37327 * 54.30180 * 10 9 7 12 12 C 1.53749 * 110.42244 * 291.92084 * 10 9 7 13 13 N 1.46533 * 105.17559 * 241.23649 * 12 10 9 14 14 C 1.39577 * 110.08989 * 0.02562 * 13 12 10 15 15 C 1.39699 * 129.30929 * 179.97438 * 14 13 12 16 16 C 1.38491 * 120.15494 * 179.80778 * 15 14 13 17 17 C 1.38266 * 120.33713 * 0.16735 * 16 15 14 18 18 C 1.38471 * 119.79724 * 359.89647 * 17 16 15 19 19 F 1.35098 * 119.94746 * 180.02562 * 18 17 16 20 20 C 1.38391 * 120.10026 * 359.97438 * 18 17 16 21 21 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 23 23 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 24 24 H 1.09003 * 110.30379 * 0.16232 * 12 10 9 25 25 H 1.09000 * 110.30305 * 122.30814 * 12 10 9 26 26 H 0.97008 * 124.95631 * 180.02562 * 13 12 10 27 27 H 1.08005 * 119.82988 * 0.02562 * 15 14 13 28 28 H 1.08000 * 119.79822 * 180.02562 * 16 15 14 29 29 H 1.07992 * 120.10284 * 179.87362 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 6 4.0215 -2.6365 -0.0183 11 1 3.5824 -3.1907 -0.8479 12 6 3.6989 -3.3254 1.3178 13 7 4.9999 -3.6863 1.8873 14 6 6.0263 -3.2828 1.0318 15 6 7.4082 -3.4243 1.1792 16 6 8.2645 -2.9516 0.1987 17 6 7.7598 -2.3338 -0.9306 18 6 6.3910 -2.1893 -1.0823 19 9 5.8946 -1.5866 -2.1847 20 6 5.5308 -2.6622 -0.1067 21 1 -0.4850 0.8400 0.0004 22 1 3.8711 -0.6780 -0.9023 23 1 3.8785 -0.6824 0.8776 24 1 3.1734 -2.6379 1.9806 25 1 3.0995 -4.2197 1.1472 26 1 5.1290 -4.1395 2.7352 27 1 7.8081 -3.9068 2.0589 28 1 9.3319 -3.0644 0.3184 29 1 8.4310 -1.9649 -1.6919 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261008692.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:10 Heat of formation + Delta-G solvation = -20.366608 kcal Electronic energy + Delta-G solvation = -14695.912497 eV Core-core repulsion = 12111.934258 eV Total energy + Delta-G solvation = -2583.978239 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.36983 -39.90550 -36.07280 -33.39618 -31.70958 -29.40507 -29.04872 -26.54640 -22.96971 -22.25185 -21.58736 -19.59987 -17.65061 -16.84738 -16.07204 -15.35848 -15.22486 -14.82827 -14.59945 -14.27253 -13.89686 -12.84862 -12.60560 -12.43666 -12.23136 -11.83144 -11.50591 -11.43680 -11.04207 -10.93991 -10.28239 -9.95769 -9.77345 -9.69420 -9.17490 -8.54651 -8.22817 -7.09377 -6.05939 -4.04330 1.54170 1.73461 3.31896 3.39810 3.47083 3.68330 3.96487 4.46075 4.72658 4.96628 5.16150 5.25841 5.31011 5.50331 5.70259 5.72625 5.80060 6.26269 6.27510 6.45277 6.54542 6.60110 6.61488 6.73858 6.98916 7.25043 7.36320 7.41976 7.76078 8.09580 8.49511 8.97265 9.56999 11.06985 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.033269 B = 0.009455 C = 0.008192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.424406 B = 2960.657462 C = 3417.102778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.263 1.263 6 H -0.287 1.287 7 C -0.520 4.520 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.033 4.033 11 H 0.084 0.916 12 C 0.126 3.874 13 N -0.741 5.741 14 C 0.224 3.776 15 C -0.204 4.204 16 C -0.056 4.056 17 C -0.218 4.218 18 C 0.156 3.844 19 F -0.137 7.137 20 C -0.195 4.195 21 H 0.263 0.737 22 H 0.024 0.976 23 H 0.013 0.987 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.408 0.592 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.185 -6.538 2.314 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.701 3.299 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.213 1.213 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.039 4.039 10 C -0.052 4.052 11 H 0.102 0.898 12 C 0.002 3.998 13 N -0.371 5.371 14 C 0.118 3.882 15 C -0.228 4.228 16 C -0.075 4.075 17 C -0.239 4.239 18 C 0.136 3.864 19 F -0.116 7.116 20 C -0.201 4.201 21 H 0.073 0.927 22 H 0.042 0.958 23 H 0.032 0.968 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.245 0.755 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.795 -6.403 2.301 15.381 hybrid contribution 0.296 0.862 0.203 0.934 sum 14.091 -5.540 2.504 15.346 Atomic orbital electron populations 1.69905 1.06245 1.26931 1.50977 1.24969 0.94672 0.99072 0.94410 0.86849 0.80673 0.83777 0.78557 1.20327 1.18777 1.21282 1.21082 0.89041 0.94550 1.51148 0.90764 1.19643 0.97106 0.90206 0.96969 1.20575 0.87894 1.00173 0.96550 0.89782 1.22005 0.83722 0.98860 0.95192 1.44972 1.04603 1.65009 1.22541 1.18210 0.89209 0.91391 0.89363 1.20436 0.90189 1.10106 1.02044 1.20598 0.98938 0.95664 0.92256 1.20731 0.92756 1.08930 1.01495 1.17016 0.91149 0.95025 0.83173 1.91487 1.88404 1.80766 1.50904 1.20265 0.97456 1.06497 0.95844 0.92707 0.95751 0.96830 0.89773 0.92004 0.75489 0.86388 0.85572 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.81 15 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 15 3 Si 0.87 22.10 27.47 -169.99 -4.67 17.43 15 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 5 H -0.26 -6.58 6.54 56.52 0.37 -6.21 15 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 7 C -0.52 -14.55 9.05 -34.44 -0.31 -14.86 15 8 H 0.07 2.18 7.97 -52.49 -0.42 1.76 15 9 C 0.00 -0.04 3.36 -27.88 -0.09 -0.14 15 10 C -0.03 -0.68 2.99 -91.13 -0.27 -0.96 15 11 H 0.08 1.76 8.14 -51.93 -0.42 1.34 15 12 C 0.13 2.23 7.27 -3.63 -0.03 2.21 15 13 N -0.74 -11.19 6.53 -58.05 -0.38 -11.57 15 14 C 0.22 3.67 7.04 -83.57 -0.59 3.08 15 15 C -0.20 -2.79 10.11 -38.94 -0.39 -3.19 15 16 C -0.06 -0.72 10.04 -39.48 -0.40 -1.11 15 17 C -0.22 -3.22 10.04 -39.49 -0.40 -3.61 15 18 C 0.16 2.85 7.29 -39.44 -0.29 2.56 15 19 F -0.14 -2.71 16.82 2.25 0.04 -2.67 15 20 C -0.19 -3.68 5.54 -104.10 -0.58 -4.26 15 21 H 0.26 7.57 8.31 -40.82 -0.34 7.23 15 22 H 0.02 0.62 6.75 -51.93 -0.35 0.27 15 23 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 15 24 H 0.08 1.62 7.46 -51.93 -0.39 1.23 15 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 26 H 0.41 4.80 8.96 -40.82 -0.37 4.43 15 27 H 0.12 1.29 8.06 -52.48 -0.42 0.87 15 28 H 0.13 1.19 8.06 -52.49 -0.42 0.76 15 29 H 0.13 1.60 8.06 -52.49 -0.42 1.17 15 LS Contribution 251.21 15.07 3.79 3.79 Total: -1.00 -30.92 251.21 -7.09 -38.01 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -3.20 Total: 0.16 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -3.44 Total: -18.34 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.39 Total: -38.38 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.92 -7.09 -38.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008692.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.645 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds