Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.37594 * 305.69468 * 10 9 7 12 12 C 1.53749 * 110.42299 * 68.07843 * 10 9 7 13 13 N 1.46527 * 105.17733 * 118.76507 * 12 10 9 14 14 C 1.39583 * 110.08839 * 0.02562 * 13 12 10 15 15 C 1.39694 * 129.30497 * 180.02562 * 14 13 12 16 16 C 1.37840 * 120.33603 * 180.02562 * 15 14 13 17 17 C 1.38261 * 120.25721 * 359.97065 * 16 15 14 18 18 C 1.38465 * 119.80005 * 0.02562 * 17 16 15 19 19 F 1.35112 * 119.94544 * 179.97438 * 18 17 16 20 20 C 1.38168 * 120.18250 * 0.09351 * 18 17 16 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 1.09008 * 110.29904 * 237.68686 * 12 10 9 25 25 H 1.09003 * 110.30433 * 359.83390 * 12 10 9 26 26 H 0.96998 * 124.95679 * 180.02562 * 13 12 10 27 27 H 1.08004 * 119.83169 * 359.97438 * 15 14 13 28 28 H 1.07998 * 119.86808 * 180.02562 * 16 15 14 29 29 H 1.07997 * 120.10080 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9452 -3.5631 -0.8293 12 6 3.0029 -3.7203 1.3372 13 7 2.6649 -5.0245 1.9132 14 6 1.8035 -5.7165 1.0603 15 6 1.2355 -6.9835 1.2139 16 6 0.4000 -7.4941 0.2437 17 6 0.1164 -6.7559 -0.8904 18 6 0.6749 -5.4991 -1.0509 19 9 0.4001 -4.7753 -2.1582 20 6 1.5149 -4.9834 -0.0827 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 4.0772 -3.6492 1.1665 25 1 2.6700 -2.9181 1.9959 26 1 2.9920 -5.3582 2.7632 27 1 1.4527 -7.5663 2.0969 28 1 -0.0353 -8.4743 0.3704 29 1 -0.5389 -7.1583 -1.6487 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261008693.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = -27.445019 kcal Electronic energy + Delta-G solvation = -14672.601053 eV Core-core repulsion = 12088.315871 eV Total energy + Delta-G solvation = -2584.285182 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.33047 -39.90880 -36.10046 -33.67071 -31.56339 -29.14419 -28.96435 -25.78519 -23.14266 -22.37428 -21.61007 -19.86673 -17.62595 -16.79110 -16.09443 -15.42090 -15.11680 -14.79944 -14.47385 -14.18425 -13.70710 -13.04903 -12.64358 -12.29326 -11.96551 -11.82460 -11.63078 -11.35195 -10.84833 -10.63558 -10.27176 -10.14985 -9.95607 -9.73705 -8.58473 -8.32288 -8.19212 -7.07715 -6.34806 -4.04803 1.58313 1.75049 3.43689 3.46137 3.64643 3.68629 3.99486 4.55025 4.76101 4.98637 5.18922 5.29433 5.43013 5.52623 5.72365 5.74182 5.79113 6.25182 6.29819 6.47577 6.58000 6.63005 6.64270 6.78734 7.00970 7.39353 7.44601 7.50148 8.09569 8.18588 8.45882 8.87996 9.68057 11.05530 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.039517 B = 0.008245 C = 0.007255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.385337 B = 3394.979519 C = 3858.302681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 1.068 2.932 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.050 0.950 9 C 0.022 3.978 10 C -0.036 4.036 11 H 0.079 0.921 12 C 0.127 3.873 13 N -0.741 5.741 14 C 0.223 3.777 15 C -0.204 4.204 16 C -0.056 4.056 17 C -0.218 4.218 18 C 0.158 3.842 19 F -0.137 7.137 20 C -0.193 4.193 21 H 0.269 0.731 22 H 0.009 0.991 23 H 0.016 0.984 24 H 0.059 0.941 25 H 0.082 0.918 26 H 0.408 0.592 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.706 -12.824 2.391 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.188 4.188 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.641 4.641 8 H 0.068 0.932 9 C -0.015 4.015 10 C -0.054 4.054 11 H 0.097 0.903 12 C 0.004 3.996 13 N -0.372 5.372 14 C 0.117 3.883 15 C -0.227 4.227 16 C -0.075 4.075 17 C -0.239 4.239 18 C 0.138 3.862 19 F -0.116 7.116 20 C -0.199 4.199 21 H 0.080 0.920 22 H 0.027 0.973 23 H 0.034 0.966 24 H 0.077 0.923 25 H 0.100 0.900 26 H 0.245 0.755 27 H 0.135 0.865 28 H 0.145 0.855 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.607 -10.971 2.381 11.791 hybrid contribution 0.289 -1.716 0.182 1.750 sum 3.896 -12.687 2.563 13.517 Atomic orbital electron populations 1.70763 1.06932 1.30724 1.46238 1.25827 0.96532 1.02664 0.93785 0.83557 0.74894 0.75438 0.76462 1.20799 1.21429 1.21486 1.21999 0.94173 0.91762 1.56148 0.93171 1.19269 0.93892 0.91678 0.96635 1.20638 0.97180 0.91501 0.96110 0.90311 1.21980 0.98489 0.83940 0.95223 1.44941 1.51372 1.18501 1.22338 1.18221 0.89371 0.91285 0.89409 1.20272 1.05131 0.95188 1.02111 1.20444 0.95947 0.98749 0.92315 1.20733 1.07066 0.94682 1.01455 1.16972 0.96292 0.89873 0.83110 1.91494 1.92096 1.77460 1.50524 1.20228 1.04404 0.99452 0.95826 0.92007 0.97293 0.96619 0.92306 0.89996 0.75547 0.86455 0.85537 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.28 13.65 55.43 0.76 -27.53 15 2 C 0.02 0.47 5.46 -17.82 -0.10 0.37 15 3 Si 1.07 25.23 29.90 -169.99 -5.08 20.15 15 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.60 -16.94 8.50 -34.44 -0.29 -17.23 15 8 H 0.05 1.36 7.73 -52.48 -0.41 0.95 15 9 C 0.02 0.59 3.61 -27.88 -0.10 0.49 15 10 C -0.04 -0.77 2.98 -91.13 -0.27 -1.04 15 11 H 0.08 1.72 8.14 -51.93 -0.42 1.30 15 12 C 0.13 2.35 7.27 -3.64 -0.03 2.32 15 13 N -0.74 -11.71 6.53 -58.05 -0.38 -12.09 15 14 C 0.22 3.83 7.04 -83.57 -0.59 3.24 15 15 C -0.20 -2.93 10.07 -39.18 -0.39 -3.32 15 16 C -0.06 -0.75 10.02 -39.72 -0.40 -1.15 15 17 C -0.22 -3.39 10.04 -39.49 -0.40 -3.79 15 18 C 0.16 3.02 7.28 -39.52 -0.29 2.73 15 19 F -0.14 -2.86 16.83 2.25 0.04 -2.82 15 20 C -0.19 -3.85 5.54 -104.18 -0.58 -4.42 15 21 H 0.27 8.44 7.22 -40.82 -0.29 8.15 15 22 H 0.01 0.25 8.01 -51.93 -0.42 -0.17 15 23 H 0.02 0.44 7.57 -51.93 -0.39 0.05 15 24 H 0.06 0.97 8.14 -51.92 -0.42 0.55 15 25 H 0.08 1.64 7.46 -51.93 -0.39 1.26 15 26 H 0.41 5.03 8.96 -40.82 -0.37 4.66 15 27 H 0.12 1.36 8.06 -52.48 -0.42 0.93 15 28 H 0.13 1.26 8.06 -52.49 -0.42 0.84 15 29 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15 LS Contribution 253.46 15.07 3.82 3.82 Total: -1.00 -31.49 253.46 -7.45 -38.94 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -3.17 Total: 1.34 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -3.43 Total: -21.81 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.38 Total: -39.62 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.08 Total: 20.15 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.49 -7.45 -38.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008693.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.495 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds