Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00120 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47038 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.69144 * 303.15799 * 10 9 7 12 12 C 1.54592 * 110.77941 * 179.64894 * 10 9 7 13 13 C 1.51570 * 102.86265 * 216.17401 * 12 10 9 14 14 C 1.38004 * 131.53395 * 196.32822 * 13 12 10 15 15 C 1.38260 * 120.12415 * 179.29901 * 14 13 12 16 16 C 1.38323 * 119.90043 * 359.97438 * 15 14 13 17 17 C 1.38068 * 120.23230 * 0.13812 * 16 15 14 18 18 F 1.35102 * 119.91843 * 180.02562 * 17 16 15 19 19 C 1.38857 * 107.97567 * 15.94902 * 13 12 10 20 20 N 1.40214 * 110.94969 * 0.79298 * 19 13 12 21 21 H 0.96998 * 119.99255 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47048 * 299.99904 * 9 7 2 23 23 H 1.08996 * 109.46943 * 60.00189 * 9 7 2 24 24 H 1.09004 * 110.73311 * 334.52072 * 12 10 9 25 25 H 1.09008 * 110.73073 * 97.83075 * 12 10 9 26 26 H 1.08002 * 119.93509 * 359.29996 * 14 13 12 27 27 H 1.07999 * 120.04866 * 180.02562 * 15 14 13 28 28 H 1.07997 * 119.88654 * 180.11754 * 16 15 14 29 29 H 1.00902 * 111.00009 * 103.38116 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9196 -3.5924 -0.8542 12 6 1.5033 -5.0182 0.0083 13 6 2.3918 -5.8834 0.8798 14 6 2.4566 -7.2517 1.0468 15 6 3.3856 -7.8022 1.9103 16 6 4.2517 -6.9791 2.6073 17 6 4.1899 -5.6092 2.4460 18 9 5.0392 -4.8113 3.1295 19 6 3.2517 -5.0468 1.5789 20 7 3.0063 -3.7019 1.2672 21 1 -0.4849 -0.8401 0.0004 22 1 0.6248 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 0.5128 -4.9132 0.4511 25 1 1.4352 -5.4274 -0.9997 26 1 1.7803 -7.8938 0.5020 27 1 3.4355 -8.8732 2.0397 28 1 4.9785 -7.4094 3.2802 29 1 2.4969 -3.2459 2.0092 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261009640.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = -44.431924 kcal Electronic energy + Delta-G solvation = -14415.682537 eV Core-core repulsion = 11830.660748 eV Total energy + Delta-G solvation = -2585.021789 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.80931 -41.44737 -37.83122 -35.37303 -32.51135 -31.72302 -29.50143 -28.22459 -25.20683 -22.95361 -22.57931 -22.01766 -19.08035 -18.29916 -17.63111 -17.41793 -16.63013 -15.89801 -15.72933 -15.54323 -15.36276 -14.84432 -14.23956 -14.04599 -13.74814 -13.43449 -12.99964 -12.66041 -12.56870 -12.39715 -12.18610 -11.98570 -11.78850 -10.88954 -10.59370 -10.55537 -9.69108 -8.92422 -8.67755 -6.37258 0.17291 0.19519 1.51826 1.59697 1.78543 2.54308 2.55737 2.75277 3.16603 3.32700 3.55461 3.80998 3.98410 4.07899 4.29293 4.35477 4.43362 4.61464 4.77806 4.81281 5.02719 5.05246 5.14558 5.33702 5.36201 5.43040 5.70824 5.96134 6.02959 6.20405 6.26738 6.59928 7.41029 8.73508 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.042909 B = 0.007136 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.381893 B = 3923.091001 C = 4459.536806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.036 4.036 3 Si 1.117 2.883 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.014 3.986 10 C 0.104 3.896 11 H 0.073 0.927 12 C -0.102 4.102 13 C -0.130 4.130 14 C -0.094 4.094 15 C -0.099 4.099 16 C -0.134 4.134 17 C 0.065 3.935 18 F -0.154 7.154 19 C 0.034 3.966 20 N -0.632 5.632 21 H 0.257 0.743 22 H -0.004 1.004 23 H 0.010 0.990 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.157 0.843 27 H 0.178 0.822 28 H 0.164 0.836 29 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -16.722 3.226 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.233 4.233 3 Si 0.939 3.061 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.641 4.641 8 H 0.065 0.935 9 C -0.023 4.023 10 C -0.004 4.004 11 H 0.091 0.909 12 C -0.140 4.140 13 C -0.133 4.133 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.153 4.153 17 C 0.043 3.957 18 F -0.133 7.133 19 C -0.065 4.065 20 N -0.261 5.261 21 H 0.066 0.934 22 H 0.015 0.985 23 H 0.028 0.972 24 H 0.101 0.899 25 H 0.122 0.878 26 H 0.175 0.825 27 H 0.195 0.805 28 H 0.182 0.818 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.905 -14.814 2.976 16.223 hybrid contribution -0.614 -1.229 0.354 1.419 sum 5.291 -16.043 3.330 17.219 Atomic orbital electron populations 1.70904 1.07777 1.29889 1.49080 1.27250 0.96587 1.06506 0.92978 0.82908 0.74093 0.71470 0.77583 1.20188 1.20676 1.19960 1.22325 0.94520 0.92863 1.54359 0.93497 1.19326 0.94051 0.93549 0.95361 1.22388 0.93336 0.94139 0.90564 0.90852 1.21815 0.98153 0.93448 1.00604 1.21167 0.96388 0.95222 1.00485 1.20892 0.99531 0.91970 0.98821 1.21351 0.93876 1.01560 0.94952 1.21285 1.02304 0.89226 1.02440 1.17699 0.91543 0.89484 0.96946 1.91431 1.69064 1.74487 1.78302 1.20035 0.97010 0.90754 0.98689 1.58434 1.49599 1.11464 1.06622 0.93379 0.98549 0.97154 0.89937 0.87807 0.82540 0.80488 0.81811 0.82298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.65 21.45 0.29 -57.52 15 2 C -0.04 -2.08 5.46 84.65 0.46 -1.62 15 3 Si 1.12 51.78 29.90 68.60 2.05 53.83 15 4 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 15 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 7 C -0.60 -34.51 8.92 25.60 0.23 -34.28 15 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 15 9 C 0.01 0.73 3.63 29.85 0.11 0.84 15 10 C 0.10 4.38 3.51 45.26 0.16 4.54 15 11 H 0.07 3.24 8.14 -2.39 -0.02 3.22 15 12 C -0.10 -3.34 6.57 30.67 0.20 -3.14 15 13 C -0.13 -3.94 6.23 -19.49 -0.12 -4.06 15 14 C -0.09 -2.03 10.03 22.22 0.22 -1.81 15 15 C -0.10 -1.78 10.06 22.30 0.22 -1.56 15 16 C -0.13 -3.01 10.00 22.25 0.22 -2.79 15 17 C 0.06 2.08 7.32 22.55 0.17 2.24 15 18 F -0.15 -5.48 17.27 44.97 0.78 -4.71 15 19 C 0.03 1.23 6.74 38.27 0.26 1.49 15 20 N -0.63 -26.83 6.90 -312.57 -2.16 -28.98 15 21 H 0.26 15.81 7.22 -92.71 -0.67 15.14 15 22 H 0.00 -0.20 7.93 -2.39 -0.02 -0.21 15 23 H 0.01 0.54 8.01 -2.39 -0.02 0.52 15 24 H 0.08 2.68 7.91 -2.38 -0.02 2.67 15 25 H 0.10 2.90 8.14 -2.38 -0.02 2.88 15 26 H 0.16 2.38 8.06 -2.91 -0.02 2.36 15 27 H 0.18 1.62 8.06 -2.91 -0.02 1.60 15 28 H 0.16 2.67 8.06 -2.91 -0.02 2.64 15 29 H 0.35 15.51 8.33 -89.69 -0.75 14.76 15 Total: -1.00 -67.70 255.11 3.61 -64.09 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.52 Total: 13.43 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 2.13 Total: -40.15 kcal Atomic # 7 Polarization: -84.64 SS G_CDS: -1.86 Total: -86.50 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 0.78 Total: -4.71 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 2.05 Total: 53.83 kcal Total: -67.70 3.61 -64.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009640.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.658 kcal (2) G-P(sol) polarization free energy of solvation -67.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds