Wall clock time and date at job start Mon Mar 30 2020 02:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08992 * 110.69298 * 51.69856 * 10 9 7 12 12 C 1.54594 * 110.77701 * 174.99716 * 10 9 7 13 13 C 1.51576 * 102.86094 * 143.82248 * 12 10 9 14 14 C 1.38003 * 131.54029 * 164.01948 * 13 12 10 15 15 C 1.38262 * 120.12566 * 180.30068 * 14 13 12 16 16 C 1.38333 * 119.90107 * 359.95567 * 15 14 13 17 17 C 1.38071 * 120.22949 * 359.91765 * 16 15 14 18 18 F 1.35097 * 119.91890 * 179.97438 * 17 16 15 19 19 C 1.38857 * 107.97278 * 344.04485 * 13 12 10 20 20 N 1.40213 * 110.95582 * 359.21857 * 19 13 12 21 21 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 23 23 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 24 24 H 1.08997 * 110.73599 * 262.16192 * 12 10 9 25 25 H 1.09004 * 110.73855 * 25.48014 * 12 10 9 26 26 H 1.08001 * 119.93597 * 0.27909 * 14 13 12 27 27 H 1.08001 * 120.05181 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.88758 * 179.89555 * 16 15 14 29 29 H 1.00903 * 111.00006 * 256.61444 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9789 -3.5459 0.7856 12 6 1.5078 -5.0149 0.1136 13 6 2.3308 -5.9313 -0.7698 14 6 2.3817 -7.3070 -0.8655 15 6 3.2402 -7.9086 -1.7670 16 6 4.0486 -7.1293 -2.5749 17 6 4.0000 -5.7523 -2.4854 18 9 4.7926 -4.9972 -3.2771 19 6 3.1340 -5.1386 -1.5789 20 7 2.9096 -3.7773 -1.3287 21 1 -0.4850 -0.8400 0.0004 22 1 0.6281 -2.5591 0.8866 23 1 0.6207 -2.5548 -0.8933 24 1 1.5161 -5.3645 1.1460 25 1 0.4867 -4.9340 -0.2593 26 1 1.7501 -7.9149 -0.2347 27 1 3.2795 -8.9854 -1.8406 28 1 4.7203 -7.5994 -3.2778 29 1 2.3451 -3.3643 -2.0559 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261009641.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:26 Heat of formation + Delta-G solvation = -25.777268 kcal Electronic energy + Delta-G solvation = -14401.409620 eV Core-core repulsion = 11817.196758 eV Total energy + Delta-G solvation = -2584.212862 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.53283 -40.15602 -36.51003 -33.33764 -31.24530 -30.11526 -28.26071 -26.56442 -23.24380 -21.75126 -21.33926 -20.41351 -17.30048 -16.72597 -16.34705 -16.17839 -15.35855 -14.64897 -14.14001 -13.99170 -13.69144 -13.13726 -12.85486 -12.78564 -12.22946 -11.80075 -11.48267 -11.22640 -11.09571 -10.89475 -10.54677 -10.15283 -9.93654 -9.46561 -8.59588 -8.57445 -8.37557 -7.57481 -6.38750 -4.08384 1.27638 1.32728 3.44932 3.49135 3.64781 3.65265 4.07270 4.50246 4.55436 4.80478 4.89058 5.19621 5.34854 5.38386 5.50481 5.54649 5.61315 6.05394 6.09191 6.16552 6.31932 6.43190 6.45790 6.54892 6.78969 7.09125 7.23334 7.50033 7.73554 8.13187 8.47197 8.84933 9.62613 11.01473 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.043659 B = 0.007022 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.180636 B = 3986.243893 C = 4497.206243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.285 1.285 7 C -0.594 4.594 8 H 0.057 0.943 9 C 0.008 3.992 10 C 0.101 3.899 11 H 0.088 0.912 12 C -0.113 4.113 13 C -0.120 4.120 14 C -0.100 4.100 15 C -0.120 4.120 16 C -0.142 4.142 17 C 0.089 3.911 18 F -0.139 7.139 19 C 0.074 3.926 20 N -0.614 5.614 21 H 0.267 0.733 22 H 0.022 0.978 23 H 0.011 0.989 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.123 0.877 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.459 -14.379 -2.682 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.189 4.189 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.632 4.632 8 H 0.075 0.925 9 C -0.029 4.029 10 C -0.007 4.007 11 H 0.106 0.894 12 C -0.151 4.151 13 C -0.123 4.123 14 C -0.119 4.119 15 C -0.139 4.139 16 C -0.161 4.161 17 C 0.067 3.933 18 F -0.117 7.117 19 C -0.026 4.026 20 N -0.243 5.243 21 H 0.077 0.923 22 H 0.040 0.960 23 H 0.029 0.971 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.152 0.848 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 4.927 -12.415 -2.513 13.591 hybrid contribution -0.423 -1.882 -0.298 1.951 sum 4.504 -14.297 -2.811 15.251 Atomic orbital electron populations 1.70787 1.06926 1.30438 1.46958 1.25854 0.96469 1.02833 0.93725 0.83496 0.74785 0.74978 0.76729 1.21512 1.21327 1.21110 1.22015 0.94744 0.91224 1.55251 0.92511 1.19480 0.93746 0.92938 0.96778 1.22690 0.95360 0.93410 0.89208 0.89391 1.21996 0.99165 0.94962 0.99022 1.21124 0.97034 0.93947 1.00198 1.20451 0.99443 0.92923 0.99112 1.20778 0.97045 0.99559 0.96521 1.20853 1.02123 0.91041 1.02094 1.17231 0.93536 0.88600 0.93905 1.91475 1.71853 1.76222 1.72173 1.19848 0.95422 0.91403 0.95944 1.58451 1.50342 1.09096 1.06457 0.92281 0.96001 0.97134 0.89897 0.89874 0.85865 0.85198 0.84809 0.80919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.53 13.65 55.43 0.76 -26.77 15 2 C 0.01 0.42 5.46 -17.82 -0.10 0.32 15 3 Si 1.07 25.47 29.90 -169.99 -5.08 20.38 15 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 7 C -0.59 -16.51 9.03 -34.44 -0.31 -16.82 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.01 0.19 3.67 -27.88 -0.10 0.09 15 10 C 0.10 2.07 3.46 -66.32 -0.23 1.84 15 11 H 0.09 1.88 8.14 -51.93 -0.42 1.45 15 12 C -0.11 -1.88 6.57 -26.61 -0.17 -2.06 15 13 C -0.12 -1.92 6.23 -104.05 -0.65 -2.57 15 14 C -0.10 -1.30 10.03 -39.66 -0.40 -1.70 15 15 C -0.12 -1.40 10.06 -39.54 -0.40 -1.79 15 16 C -0.14 -1.85 10.00 -39.61 -0.40 -2.24 15 17 C 0.09 1.47 7.32 -39.14 -0.29 1.18 15 18 F -0.14 -2.44 17.27 2.25 0.04 -2.40 15 19 C 0.07 1.33 6.74 -83.29 -0.56 0.77 15 20 N -0.61 -12.49 7.01 -50.15 -0.35 -12.84 15 21 H 0.27 7.93 7.22 -40.82 -0.29 7.63 15 22 H 0.02 0.55 8.01 -51.93 -0.42 0.13 15 23 H 0.01 0.26 7.80 -51.93 -0.40 -0.14 15 24 H 0.08 1.23 8.14 -51.93 -0.42 0.80 15 25 H 0.08 1.36 7.91 -51.93 -0.41 0.95 15 26 H 0.12 1.29 8.06 -52.49 -0.42 0.86 15 27 H 0.13 1.08 8.06 -52.49 -0.42 0.66 15 28 H 0.13 1.39 8.06 -52.49 -0.42 0.97 15 29 H 0.36 7.46 8.25 -39.29 -0.32 7.14 15 LS Contribution 255.12 15.07 3.84 3.84 Total: -1.00 -30.30 255.12 -7.56 -37.86 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.17 Total: 2.91 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -3.60 Total: -22.98 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.40 Total: -39.61 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.08 Total: 20.38 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.30 -7.56 -37.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009641.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.083 kcal (2) G-P(sol) polarization free energy of solvation -30.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds