Wall clock time and date at job start Mon Mar 30 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08992 * 110.69298 * 51.69856 * 10 9 7 12 12 C 1.54594 * 110.77701 * 174.99716 * 10 9 7 13 13 C 1.51576 * 102.86094 * 143.82248 * 12 10 9 14 14 C 1.38003 * 131.54029 * 164.01948 * 13 12 10 15 15 C 1.38262 * 120.12566 * 180.30068 * 14 13 12 16 16 C 1.38333 * 119.90107 * 359.95567 * 15 14 13 17 17 C 1.38071 * 120.22949 * 359.91765 * 16 15 14 18 18 F 1.35097 * 119.91890 * 179.97438 * 17 16 15 19 19 C 1.38857 * 107.97278 * 344.04485 * 13 12 10 20 20 N 1.40213 * 110.95582 * 359.21857 * 19 13 12 21 21 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 23 23 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 24 24 H 1.08997 * 110.73599 * 262.16192 * 12 10 9 25 25 H 1.09004 * 110.73855 * 25.48014 * 12 10 9 26 26 H 1.08001 * 119.93597 * 0.27909 * 14 13 12 27 27 H 1.08001 * 120.05181 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.88758 * 179.89555 * 16 15 14 29 29 H 1.00903 * 111.00006 * 256.61444 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9789 -3.5459 0.7856 12 6 1.5078 -5.0149 0.1136 13 6 2.3308 -5.9313 -0.7698 14 6 2.3817 -7.3070 -0.8655 15 6 3.2402 -7.9086 -1.7670 16 6 4.0486 -7.1293 -2.5749 17 6 4.0000 -5.7523 -2.4854 18 9 4.7926 -4.9972 -3.2771 19 6 3.1340 -5.1386 -1.5789 20 7 2.9096 -3.7773 -1.3287 21 1 -0.4850 -0.8400 0.0004 22 1 0.6281 -2.5591 0.8866 23 1 0.6207 -2.5548 -0.8933 24 1 1.5161 -5.3645 1.1460 25 1 0.4867 -4.9340 -0.2593 26 1 1.7501 -7.9149 -0.2347 27 1 3.2795 -8.9854 -1.8406 28 1 4.7203 -7.5994 -3.2778 29 1 2.3451 -3.3643 -2.0559 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261009641.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:25 Heat of formation + Delta-G solvation = -44.455104 kcal Electronic energy + Delta-G solvation = -14402.219552 eV Core-core repulsion = 11817.196758 eV Total energy + Delta-G solvation = -2585.022794 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.81519 -41.45169 -37.83180 -35.38327 -32.51766 -31.72542 -29.50854 -28.23171 -25.20356 -22.95483 -22.58700 -22.02813 -19.11302 -18.29094 -17.62772 -17.41718 -16.63861 -15.88745 -15.73792 -15.54970 -15.36985 -14.86060 -14.24371 -14.03682 -13.74495 -13.43412 -13.01692 -12.65947 -12.54786 -12.43010 -12.19576 -11.98806 -11.78263 -10.88561 -10.62072 -10.54784 -9.69392 -8.93070 -8.68106 -6.37731 0.16983 0.19069 1.51483 1.59961 1.78681 2.54281 2.55353 2.74317 3.16235 3.32268 3.55026 3.80798 3.98056 4.07653 4.29087 4.35139 4.43069 4.61745 4.77158 4.80646 5.02388 5.05606 5.14228 5.33454 5.35170 5.42719 5.70785 5.96104 6.01601 6.19179 6.26011 6.59165 7.40498 8.73104 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.043659 B = 0.007022 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.180636 B = 3986.243893 C = 4497.206243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.036 4.036 3 Si 1.117 2.883 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.282 1.282 7 C -0.604 4.604 8 H 0.045 0.955 9 C 0.015 3.985 10 C 0.104 3.896 11 H 0.073 0.927 12 C -0.102 4.102 13 C -0.129 4.129 14 C -0.094 4.094 15 C -0.099 4.099 16 C -0.134 4.134 17 C 0.065 3.935 18 F -0.154 7.154 19 C 0.034 3.966 20 N -0.633 5.633 21 H 0.257 0.743 22 H 0.011 0.989 23 H -0.004 1.004 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.157 0.843 27 H 0.178 0.822 28 H 0.165 0.835 29 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -16.900 -2.672 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.233 4.233 3 Si 0.939 3.061 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.208 1.208 7 C -0.642 4.642 8 H 0.064 0.936 9 C -0.022 4.022 10 C -0.004 4.004 11 H 0.092 0.908 12 C -0.140 4.140 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.152 4.152 17 C 0.043 3.957 18 F -0.133 7.133 19 C -0.065 4.065 20 N -0.262 5.262 21 H 0.066 0.934 22 H 0.029 0.971 23 H 0.015 0.985 24 H 0.122 0.878 25 H 0.101 0.899 26 H 0.175 0.825 27 H 0.195 0.805 28 H 0.182 0.818 29 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.655 -14.981 -2.492 16.206 hybrid contribution -0.630 -1.250 -0.337 1.439 sum 5.025 -16.231 -2.829 17.225 Atomic orbital electron populations 1.70904 1.07764 1.29894 1.49051 1.27259 0.96590 1.06518 0.92945 0.82911 0.74006 0.71417 0.77745 1.19707 1.20214 1.20798 1.22332 0.94452 0.92947 1.54428 0.93625 1.19321 0.94033 0.93516 0.95356 1.22394 0.94465 0.94166 0.89375 0.90840 1.21820 0.98683 0.92913 1.00631 1.21163 0.96965 0.95253 0.99856 1.20893 0.99487 0.91561 0.99265 1.21356 0.94546 1.01700 0.94109 1.21290 1.02256 0.89360 1.02340 1.17699 0.93824 0.90019 0.94132 1.91429 1.72307 1.76939 1.72607 1.20024 0.97716 0.90371 0.98363 1.58419 1.50499 1.11549 1.05772 0.93379 0.97096 0.98547 0.87839 0.89902 0.82532 0.80473 0.81796 0.82343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.65 21.45 0.29 -57.51 15 2 C -0.04 -2.08 5.46 84.65 0.46 -1.61 15 3 Si 1.12 51.72 29.90 68.60 2.05 53.78 15 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.28 -12.88 7.11 99.48 0.71 -12.18 15 7 C -0.60 -34.64 9.03 25.60 0.23 -34.41 15 8 H 0.05 2.67 7.74 -2.91 -0.02 2.64 15 9 C 0.02 0.76 3.67 29.85 0.11 0.87 15 10 C 0.10 4.40 3.46 45.26 0.16 4.56 15 11 H 0.07 3.26 8.14 -2.39 -0.02 3.24 15 12 C -0.10 -3.36 6.57 30.67 0.20 -3.15 15 13 C -0.13 -3.93 6.23 -19.49 -0.12 -4.05 15 14 C -0.09 -2.03 10.03 22.22 0.22 -1.81 15 15 C -0.10 -1.77 10.06 22.30 0.22 -1.55 15 16 C -0.13 -3.00 10.00 22.25 0.22 -2.77 15 17 C 0.06 2.07 7.32 22.56 0.17 2.24 15 18 F -0.15 -5.47 17.27 44.97 0.78 -4.69 15 19 C 0.03 1.24 6.74 38.27 0.26 1.49 15 20 N -0.63 -26.84 7.01 -312.56 -2.19 -29.04 15 21 H 0.26 15.81 7.22 -92.71 -0.67 15.14 15 22 H 0.01 0.57 8.01 -2.39 -0.02 0.55 15 23 H 0.00 -0.19 7.80 -2.39 -0.02 -0.21 15 24 H 0.10 2.91 8.14 -2.39 -0.02 2.89 15 25 H 0.08 2.69 7.91 -2.39 -0.02 2.67 15 26 H 0.16 2.38 8.06 -2.91 -0.02 2.35 15 27 H 0.18 1.61 8.06 -2.91 -0.02 1.59 15 28 H 0.16 2.65 8.06 -2.91 -0.02 2.63 15 29 H 0.35 15.38 8.25 -89.69 -0.74 14.65 15 Total: -1.00 -67.88 255.12 3.58 -64.30 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.52 Total: 13.37 kcal Atomic # 6 Polarization: -42.33 SS G_CDS: 2.13 Total: -40.20 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.90 Total: -86.55 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.78 Total: -4.69 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.78 kcal Total: -67.88 3.58 -64.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261009641.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.840 kcal (2) G-P(sol) polarization free energy of solvation -67.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds