Wall clock time and date at job start Mon Mar 30 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.40214 * 110.99704 * 2 1 4 4 C 1.38895 * 110.95730 * 256.28055 * 3 2 1 5 5 C 1.37960 * 120.49616 * 179.60679 * 4 3 2 6 6 C 1.38304 * 120.12245 * 0.24942 * 5 4 3 7 7 C 1.38286 * 119.89773 * 0.02562 * 6 5 4 8 8 C 1.38115 * 120.23383 * 359.89510 * 7 6 5 9 9 F 1.35095 * 119.91617 * 179.97438 * 8 7 6 10 10 C 1.51575 * 107.96563 * 359.57461 * 4 3 2 11 11 C 1.47906 * 110.99857 * 240.03093 * 2 1 3 12 12 H 1.08998 * 110.77538 * 336.37340 * 11 2 1 13 13 C 1.50705 * 110.77495 * 212.95065 * 11 2 1 14 14 H 1.07997 * 119.99449 * 241.45282 * 13 11 2 15 15 C 1.37878 * 119.99974 * 61.45037 * 13 11 2 16 16 N 1.31508 * 119.99694 * 180.02562 * 15 13 11 17 17 Si 1.86800 * 120.00232 * 0.02562 * 15 13 11 18 18 H 1.48496 * 109.47084 * 89.99894 * 17 15 13 19 19 H 1.48490 * 109.46976 * 210.00073 * 17 15 13 20 20 H 1.48501 * 109.46804 * 329.99899 * 17 15 13 21 21 H 1.09004 * 109.47170 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.47328 * 299.97438 * 1 2 3 23 23 H 1.08998 * 109.47423 * 59.97352 * 1 2 3 24 24 H 1.08008 * 119.93412 * 180.23066 * 5 4 3 25 25 H 1.07993 * 120.04921 * 180.02562 * 6 5 4 26 26 H 1.08000 * 119.88701 * 179.86814 * 7 6 5 27 27 H 1.09005 * 110.74092 * 225.45845 * 10 4 3 28 28 H 1.09000 * 110.74253 * 102.13079 * 10 4 3 29 29 H 0.97000 * 120.00029 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9714 1.3090 0.0000 4 6 2.4366 1.6626 -1.2601 5 6 2.9673 2.9162 -1.4841 6 6 3.0451 3.8318 -0.4505 7 6 2.5903 3.4891 0.8096 8 6 2.0565 2.2362 1.0394 9 9 1.6146 1.9080 2.2731 10 6 2.2347 0.4771 -2.1826 11 6 1.9990 -0.6898 -1.1962 12 1 1.2659 -1.3910 -1.5947 13 6 3.2944 -1.3913 -0.8786 14 1 4.2013 -1.1094 -1.3929 15 6 3.3218 -2.3930 0.0685 16 7 4.4523 -3.0048 0.3459 17 14 1.7530 -2.8810 0.9575 18 1 1.0685 -3.9581 0.1983 19 1 2.0875 -3.3706 2.3189 20 1 0.8561 -1.7021 1.0618 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5134 0.8902 23 1 -0.3634 0.5142 -0.8897 24 1 3.3230 3.1828 -2.4685 25 1 3.4604 4.8129 -0.6273 26 1 2.6531 4.2036 1.6171 27 1 3.1262 0.2998 -2.7842 28 1 1.3622 0.6270 -2.8186 29 1 4.4716 -3.7098 1.0119 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261021839.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:33 Heat of formation + Delta-G solvation = -10.316441 kcal Electronic energy + Delta-G solvation = -15197.312518 eV Core-core repulsion = 12613.770087 eV Total energy + Delta-G solvation = -2583.542431 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.70830 -41.50208 -37.78486 -34.60016 -32.97246 -30.77357 -30.38457 -27.35834 -26.22701 -23.09388 -22.48015 -21.61158 -19.15383 -18.08050 -17.45341 -16.86597 -16.73183 -16.38262 -15.60899 -15.44682 -15.02072 -14.73887 -14.32542 -14.00048 -13.83420 -13.21506 -13.00266 -12.76777 -12.47229 -12.34872 -12.09494 -11.94479 -11.54586 -11.23550 -10.73867 -10.19675 -9.53815 -8.57460 -8.28388 -6.39622 0.31239 0.37489 1.39125 1.47052 1.70354 2.49174 2.69601 2.78793 3.27406 3.49185 3.75844 4.01124 4.23475 4.32830 4.36185 4.44181 4.50234 4.64755 4.67775 4.86559 4.94023 5.07212 5.20306 5.25946 5.47167 5.57840 5.59621 5.87386 6.17881 6.24776 6.51988 6.70820 7.36225 8.84794 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.030870 B = 0.012389 C = 0.011181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.803170 B = 2259.566723 C = 2503.615347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.511 5.511 3 C 0.055 3.945 4 C -0.122 4.122 5 C -0.103 4.103 6 C -0.106 4.106 7 C -0.142 4.142 8 C 0.058 3.942 9 F -0.156 7.156 10 C -0.090 4.090 11 C 0.176 3.824 12 H 0.062 0.938 13 C -0.509 4.509 14 H 0.032 0.968 15 C 0.027 3.973 16 N -0.949 5.949 17 Si 0.918 3.082 18 H -0.280 1.280 19 H -0.313 1.313 20 H -0.175 1.175 21 H 0.078 0.922 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.150 0.850 25 H 0.173 0.827 26 H 0.159 0.841 27 H 0.077 0.923 28 H 0.095 0.905 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.398 13.498 -2.821 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.229 5.229 3 C -0.043 4.043 4 C -0.125 4.125 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.161 4.161 8 C 0.037 3.963 9 F -0.135 7.135 10 C -0.128 4.128 11 C 0.072 3.928 12 H 0.080 0.920 13 C -0.547 4.547 14 H 0.051 0.949 15 C -0.172 4.172 16 N -0.589 5.589 17 Si 0.743 3.257 18 H -0.207 1.207 19 H -0.241 1.241 20 H -0.096 1.096 21 H 0.097 0.903 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.168 0.832 25 H 0.190 0.810 26 H 0.177 0.823 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.254 13.035 -2.230 15.589 hybrid contribution -0.171 -0.759 0.374 0.863 sum -8.425 12.276 -1.856 15.004 Atomic orbital electron populations 1.22501 0.85831 1.02598 1.01080 1.60905 1.08011 1.10214 1.43791 1.19963 1.00714 0.90024 0.93623 1.21248 1.01088 0.96082 0.94074 1.20851 0.98717 0.91371 1.01243 1.21247 0.99547 1.00884 0.90714 1.21196 1.00675 0.93844 1.00342 1.17727 1.04700 0.95420 0.78465 1.91394 1.87853 1.93443 1.40782 1.21609 1.02462 0.91535 0.97193 1.20586 0.94724 0.92468 0.85027 0.91976 1.21062 0.94187 1.17112 1.22383 0.94930 1.25857 0.99590 0.95233 0.96502 1.70084 1.28891 1.25619 1.34289 0.86443 0.82523 0.80486 0.76279 1.20685 1.24059 1.09620 0.90340 0.91782 0.93749 0.83209 0.81002 0.82302 0.90428 0.88687 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.86 8.08 127.69 1.03 1.90 15 2 N -0.51 -22.10 2.90 -693.55 -2.01 -24.12 15 3 C 0.05 2.23 5.53 38.27 0.21 2.44 15 4 C -0.12 -4.45 6.22 -19.49 -0.12 -4.58 15 5 C -0.10 -2.93 10.03 22.22 0.22 -2.71 15 6 C -0.11 -2.57 10.06 22.30 0.22 -2.35 15 7 C -0.14 -4.04 10.00 22.25 0.22 -3.82 15 8 C 0.06 2.18 7.32 22.56 0.17 2.35 15 9 F -0.16 -6.22 17.27 44.97 0.78 -5.44 15 10 C -0.09 -3.35 6.50 30.67 0.20 -3.15 15 11 C 0.18 7.94 1.91 44.52 0.09 8.03 15 12 H 0.06 2.64 7.33 -2.39 -0.02 2.63 15 13 C -0.51 -29.23 9.32 25.60 0.24 -28.99 15 14 H 0.03 2.08 7.83 -2.91 -0.02 2.05 15 15 C 0.03 1.61 5.47 84.66 0.46 2.07 15 16 N -0.95 -61.49 13.96 21.45 0.30 -61.19 15 17 Si 0.92 44.97 26.65 68.60 1.83 46.79 15 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 19 H -0.31 -16.09 7.11 99.48 0.71 -15.38 15 20 H -0.17 -7.65 3.11 99.48 0.31 -7.34 15 21 H 0.08 2.58 6.55 -2.39 -0.02 2.56 15 22 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 23 H 0.04 1.34 8.14 -2.39 -0.02 1.32 15 24 H 0.15 3.29 8.06 -2.91 -0.02 3.27 15 25 H 0.17 2.64 8.06 -2.91 -0.02 2.61 15 26 H 0.16 3.50 8.06 -2.91 -0.02 3.48 15 27 H 0.08 2.98 7.76 -2.38 -0.02 2.96 15 28 H 0.09 2.88 8.14 -2.39 -0.02 2.86 15 29 H 0.26 16.10 8.31 -92.71 -0.77 15.33 15 Total: -1.00 -71.29 244.92 4.58 -66.71 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.75 Total: 6.04 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 2.94 Total: -28.80 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -1.72 Total: -85.30 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.78 Total: -5.44 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.83 Total: 46.79 kcal Total: -71.29 4.58 -66.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021839.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.395 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds