Wall clock time and date at job start Mon Mar 30 2020 04:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.40210 * 111.00570 * 2 1 4 4 C 1.38899 * 110.93987 * 256.96454 * 3 2 1 5 5 C 1.37949 * 120.49621 * 179.72602 * 4 3 2 6 6 C 1.38308 * 120.11983 * 359.77163 * 5 4 3 7 7 C 1.38286 * 119.89970 * 0.24214 * 6 5 4 8 8 C 1.38109 * 120.23345 * 359.82919 * 7 6 5 9 9 F 1.35096 * 119.92156 * 180.02562 * 8 7 6 10 10 C 1.51585 * 107.96538 * 358.70568 * 4 3 2 11 11 C 1.47913 * 110.99931 * 240.07274 * 2 1 3 12 12 H 1.09000 * 110.78136 * 212.75518 * 11 2 1 13 13 C 1.50697 * 110.78146 * 336.19140 * 11 2 1 14 14 H 1.08001 * 120.00000 * 118.54341 * 13 11 2 15 15 C 1.37878 * 119.99989 * 298.54303 * 13 11 2 16 16 N 1.31516 * 119.99798 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99926 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47382 * 90.00132 * 17 15 13 19 19 H 1.48500 * 109.47053 * 210.00171 * 17 15 13 20 20 H 1.48504 * 109.46998 * 329.99803 * 17 15 13 21 21 H 1.08997 * 109.47167 * 60.12816 * 1 2 3 22 22 H 1.09002 * 109.47786 * 180.12558 * 1 2 3 23 23 H 1.09006 * 109.47083 * 300.12731 * 1 2 3 24 24 H 1.08002 * 119.94382 * 180.02562 * 5 4 3 25 25 H 1.07999 * 120.04993 * 180.22202 * 6 5 4 26 26 H 1.07998 * 119.88387 * 179.84475 * 7 6 5 27 27 H 1.09003 * 110.89103 * 226.04393 * 10 4 3 28 28 H 1.08999 * 110.67605 * 102.85137 * 10 4 3 29 29 H 0.97002 * 119.99439 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9715 1.3089 0.0000 4 6 2.4226 1.6675 -1.2638 5 6 2.9533 2.9209 -1.4882 6 6 3.0361 3.8349 -0.4535 7 6 2.5905 3.4891 0.8090 8 6 2.0596 2.2352 1.0399 9 9 1.6257 1.9042 2.2757 10 6 2.2300 0.4782 -2.1838 11 6 1.9990 -0.6889 -1.1968 12 1 2.9377 -1.1937 -0.9684 13 6 0.9872 -1.6613 -1.7460 14 1 0.6001 -1.5308 -2.7457 15 6 0.5556 -2.7177 -0.9721 16 7 1.0265 -2.8763 0.2456 17 14 -0.6981 -3.9235 -1.6531 18 1 0.0069 -5.0364 -2.3381 19 1 -1.5175 -4.4670 -0.5402 20 1 -1.5805 -3.2254 -2.6223 21 1 -0.3633 0.5118 -0.8911 22 1 -0.3635 -1.0276 0.0023 23 1 -0.3633 0.5158 0.8889 24 1 3.3010 3.1904 -2.4746 25 1 3.4485 4.8171 -0.6313 26 1 2.6575 4.2022 1.6174 27 1 3.1219 0.3039 -2.7857 28 1 1.3580 0.6224 -2.8217 29 1 0.7231 -3.6197 0.7899 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261021841.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:37 Heat of formation + Delta-G solvation = -17.452251 kcal Electronic energy + Delta-G solvation = -15064.612409 eV Core-core repulsion = 12480.760547 eV Total energy + Delta-G solvation = -2583.851863 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.69765 -41.39009 -37.81384 -34.56838 -32.82727 -30.55274 -30.12942 -26.95905 -26.46446 -23.14736 -22.39166 -21.55171 -18.62488 -17.87970 -17.35345 -17.19135 -16.54170 -16.41996 -15.74847 -15.30041 -15.01711 -14.16488 -14.03777 -13.88611 -13.64283 -13.39542 -13.04491 -12.73644 -12.46663 -12.37581 -12.10480 -11.96570 -11.79600 -11.21145 -10.50808 -10.05315 -9.55569 -8.48791 -8.14951 -6.35458 0.30105 0.36383 1.41266 1.43268 1.52805 2.38513 2.69061 2.93022 3.33136 3.51921 3.83291 4.03265 4.30930 4.37046 4.45544 4.58092 4.64636 4.71845 4.84975 5.06168 5.15450 5.23596 5.34790 5.44718 5.53854 5.62220 5.71363 5.90694 6.02660 6.42801 6.64749 6.94328 7.36105 8.89834 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.045366 B = 0.009454 C = 0.008290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.055559 B = 2960.896780 C = 3376.665946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.496 5.496 3 C 0.036 3.964 4 C -0.133 4.133 5 C -0.097 4.097 6 C -0.105 4.105 7 C -0.137 4.137 8 C 0.055 3.945 9 F -0.158 7.158 10 C -0.095 4.095 11 C 0.207 3.793 12 H 0.017 0.983 13 C -0.549 4.549 14 H 0.066 0.934 15 C 0.032 3.968 16 N -0.888 5.888 17 Si 0.953 3.047 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.263 1.263 21 H 0.014 0.986 22 H 0.077 0.923 23 H 0.031 0.969 24 H 0.154 0.846 25 H 0.177 0.823 26 H 0.162 0.838 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 11.788 -2.933 12.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.213 5.213 3 C -0.063 4.063 4 C -0.136 4.136 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.156 4.156 8 C 0.034 3.966 9 F -0.137 7.137 10 C -0.133 4.133 11 C 0.102 3.898 12 H 0.035 0.965 13 C -0.588 4.588 14 H 0.085 0.915 15 C -0.171 4.171 16 N -0.524 5.524 17 Si 0.777 3.223 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.188 1.188 21 H 0.033 0.967 22 H 0.096 0.904 23 H 0.049 0.951 24 H 0.172 0.828 25 H 0.194 0.806 26 H 0.179 0.821 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.116 11.306 -2.250 11.720 hybrid contribution -0.929 -0.949 -0.250 1.352 sum 1.187 10.357 -2.500 10.720 Atomic orbital electron populations 1.21884 0.86170 1.02405 0.96557 1.60174 1.08498 1.08522 1.44098 1.20450 1.00786 0.91075 0.93945 1.21390 1.01932 0.96648 0.93670 1.20871 0.98454 0.90925 1.01312 1.21283 0.99720 1.00846 0.90497 1.21220 1.00449 0.93356 1.00535 1.17815 1.04958 0.95464 0.78403 1.91392 1.88224 1.93419 1.40675 1.21732 1.01930 0.91912 0.97708 1.20111 0.95054 0.90983 0.83619 0.96507 1.21267 1.25968 1.10532 1.01015 0.91544 1.25751 0.98009 0.98621 0.94731 1.70268 1.42838 1.29981 1.09272 0.85649 0.79178 0.79276 0.78171 1.19893 1.21026 1.18769 0.96736 0.90435 0.95058 0.82787 0.80561 0.82061 0.89495 0.90640 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.78 8.30 127.69 1.06 4.84 15 2 N -0.50 -25.70 4.92 -693.58 -3.41 -29.11 15 3 C 0.04 1.61 5.57 38.27 0.21 1.82 15 4 C -0.13 -5.12 6.23 -19.49 -0.12 -5.24 15 5 C -0.10 -2.73 10.03 22.22 0.22 -2.51 15 6 C -0.11 -2.49 10.06 22.30 0.22 -2.27 15 7 C -0.14 -3.92 10.00 22.25 0.22 -3.70 15 8 C 0.05 2.18 7.32 22.55 0.17 2.34 15 9 F -0.16 -6.80 17.27 44.97 0.78 -6.03 15 10 C -0.09 -3.90 6.49 30.67 0.20 -3.71 15 11 C 0.21 10.68 3.20 44.52 0.14 10.82 15 12 H 0.02 0.98 8.14 -2.39 -0.02 0.96 15 13 C -0.55 -29.30 7.16 25.60 0.18 -29.11 15 14 H 0.07 3.42 7.66 -2.91 -0.02 3.39 15 15 C 0.03 1.74 3.63 84.65 0.31 2.04 15 16 N -0.89 -51.47 12.18 21.45 0.26 -51.21 15 17 Si 0.95 42.08 29.54 68.60 2.03 44.11 15 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 20 H -0.26 -11.17 7.11 99.48 0.71 -10.47 15 21 H 0.01 0.68 8.11 -2.39 -0.02 0.66 15 22 H 0.08 4.19 4.80 -2.39 -0.01 4.17 15 23 H 0.03 1.48 8.14 -2.38 -0.02 1.46 15 24 H 0.15 3.23 8.06 -2.91 -0.02 3.21 15 25 H 0.18 2.48 8.06 -2.91 -0.02 2.46 15 26 H 0.16 3.51 8.06 -2.91 -0.02 3.49 15 27 H 0.09 3.19 8.14 -2.39 -0.02 3.17 15 28 H 0.08 3.06 7.81 -2.39 -0.02 3.04 15 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 15 Total: -1.00 -64.17 248.50 3.62 -60.55 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 1.15 Total: 6.36 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 2.82 Total: -24.67 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -3.15 Total: -80.32 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.78 Total: -6.03 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -64.17 3.62 -60.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261021841.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.095 kcal (2) G-P(sol) polarization free energy of solvation -64.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds