Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.26973 * 52.93456 * 10 9 7 12 12 C 1.53746 * 110.29472 * 175.00283 * 10 9 7 13 13 C 1.51220 * 104.56399 * 118.93000 * 12 10 9 14 14 C 1.38197 * 130.95619 * 179.97438 * 13 12 10 15 15 C 1.38410 * 120.13595 * 179.97438 * 14 13 12 16 16 F 1.35097 * 120.10695 * 180.02562 * 15 14 13 17 17 C 1.38483 * 119.77892 * 0.02904 * 15 14 13 18 18 C 1.37838 * 120.20317 * 359.97438 * 17 15 14 19 19 C 1.38568 * 108.55369 * 359.97438 * 13 12 10 20 20 N 1.39737 * 111.62949 * 0.02562 * 19 13 12 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.09004 * 110.41326 * 237.69276 * 12 10 9 25 25 H 1.08994 * 110.42357 * 0.15162 * 12 10 9 26 26 H 1.07995 * 119.93076 * 0.02723 * 14 13 12 27 27 H 1.07998 * 119.89091 * 180.02562 * 17 15 14 28 28 H 1.08001 * 119.84078 * 179.97438 * 18 17 15 29 29 H 0.96998 * 124.96897 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9592 -3.5486 0.8154 12 6 1.5001 -5.0009 0.1251 13 6 1.8485 -5.7503 -1.1413 14 6 1.4723 -7.0041 -1.5846 15 6 1.9307 -7.4772 -2.8019 16 9 1.5622 -8.7027 -3.2348 17 6 2.7682 -6.6902 -3.5744 18 6 3.1450 -5.4393 -3.1347 19 6 2.6861 -4.9557 -1.9076 20 7 2.9459 -3.7316 -1.2857 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 1.8492 -5.5497 0.9998 25 1 0.4247 -4.8335 0.1843 26 1 0.8187 -7.6156 -0.9803 27 1 3.1266 -7.0574 -4.5247 28 1 3.7988 -4.8306 -3.7417 29 1 3.5072 -3.0303 -1.6516 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261023651.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -26.673543 kcal Electronic energy + Delta-G solvation = -14244.210784 eV Core-core repulsion = 11659.959056 eV Total energy + Delta-G solvation = -2584.251728 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.41916 -39.90375 -36.03616 -32.97433 -31.70888 -30.01246 -28.24951 -26.73911 -23.42189 -21.97551 -21.09320 -20.15761 -17.22761 -16.80012 -16.21114 -15.86059 -15.22113 -14.74211 -14.58839 -13.87778 -13.47893 -12.72858 -12.47449 -12.44893 -12.32027 -11.80331 -11.74752 -11.49334 -11.07155 -10.68426 -10.53004 -10.42763 -9.99611 -9.22757 -9.20359 -8.62671 -8.47900 -6.75097 -6.10890 -4.14934 1.55359 1.74455 3.25202 3.31024 3.32053 3.94530 4.01814 4.35776 4.62853 4.94787 5.15736 5.25740 5.33339 5.59808 5.68905 5.75593 5.80881 6.16401 6.31957 6.36474 6.49970 6.54496 6.72108 6.78119 7.07689 7.39705 7.55544 7.75449 7.85618 8.24429 8.44548 8.90118 9.49673 10.99933 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.057294 B = 0.006074 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.593407 B = 4608.898884 C = 4813.883836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.013 3.987 10 C 0.147 3.853 11 H 0.068 0.932 12 C -0.082 4.082 13 C -0.151 4.151 14 C -0.092 4.092 15 C 0.016 3.984 16 F -0.153 7.153 17 C -0.104 4.104 18 C -0.172 4.172 19 C 0.207 3.793 20 N -0.714 5.714 21 H 0.263 0.737 22 H 0.024 0.976 23 H 0.029 0.971 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.695 -10.714 -3.179 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.072 0.928 9 C -0.025 4.025 10 C 0.043 3.957 11 H 0.086 0.914 12 C -0.120 4.120 13 C -0.156 4.156 14 C -0.111 4.111 15 C -0.005 4.005 16 F -0.132 7.132 17 C -0.123 4.123 18 C -0.196 4.196 19 C 0.098 3.902 20 N -0.341 5.341 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.047 0.953 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.141 0.859 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 4.501 -10.484 -3.018 11.802 hybrid contribution 0.555 1.136 -0.311 1.302 sum 5.055 -9.348 -3.329 11.137 Atomic orbital electron populations 1.69941 1.06067 1.26923 1.50071 1.25006 0.94835 0.99269 0.95112 0.86653 0.79583 0.83151 0.78581 1.20294 1.21245 1.20217 1.21081 0.92760 0.90898 1.51536 0.92823 1.19559 0.93715 0.91098 0.98078 1.21725 0.94411 0.95221 0.84352 0.91377 1.21234 1.01879 0.94526 0.94345 1.19807 1.02457 0.94607 0.98765 1.20174 1.00593 0.95391 0.94954 1.17118 1.04592 0.82625 0.96194 1.91412 1.90917 1.40990 1.89890 1.20600 0.98088 0.94054 0.99607 1.20088 1.06512 0.96831 0.96127 1.18577 0.92531 0.87071 0.91988 1.45156 1.52939 1.14761 1.21251 0.92780 0.95773 0.95321 0.90568 0.89576 0.85571 0.85438 0.85905 0.74836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 7 C -0.52 -13.84 8.96 -34.44 -0.31 -14.15 15 8 H 0.05 1.36 7.74 -52.49 -0.41 0.95 15 9 C 0.01 0.32 4.46 -27.88 -0.12 0.19 15 10 C 0.15 2.84 3.61 -67.52 -0.24 2.60 15 11 H 0.07 1.29 8.14 -51.93 -0.42 0.86 15 12 C -0.08 -1.38 6.58 -27.24 -0.18 -1.56 15 13 C -0.15 -2.53 6.23 -104.26 -0.65 -3.18 15 14 C -0.09 -1.40 10.02 -39.53 -0.40 -1.80 15 15 C 0.02 0.25 7.31 -39.43 -0.29 -0.04 15 16 F -0.15 -2.33 17.27 2.25 0.04 -2.29 15 17 C -0.10 -1.48 10.00 -39.64 -0.40 -1.87 15 18 C -0.17 -2.57 10.07 -39.20 -0.39 -2.97 15 19 C 0.21 3.54 7.03 -83.61 -0.59 2.95 15 20 N -0.71 -12.94 6.02 -51.64 -0.31 -13.25 15 21 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 22 H 0.02 0.64 8.14 -51.93 -0.42 0.22 15 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 25 H 0.09 1.46 7.70 -51.93 -0.40 1.06 15 26 H 0.13 1.68 8.06 -52.49 -0.42 1.25 15 27 H 0.13 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 29 H 0.41 7.20 8.96 -40.82 -0.37 6.83 15 LS Contribution 256.61 15.07 3.87 3.87 Total: -1.00 -28.60 256.61 -7.62 -36.22 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -3.27 Total: 3.06 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -3.67 Total: -18.29 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.43 Total: -38.41 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -28.60 -7.62 -36.22 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023651.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.549 kcal (2) G-P(sol) polarization free energy of solvation -28.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds