Wall clock time and date at job start Mon Mar 30 2020 02:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.26973 * 52.93456 * 10 9 7 12 12 C 1.53746 * 110.29472 * 175.00283 * 10 9 7 13 13 C 1.51220 * 104.56399 * 118.93000 * 12 10 9 14 14 C 1.38197 * 130.95619 * 179.97438 * 13 12 10 15 15 C 1.38410 * 120.13595 * 179.97438 * 14 13 12 16 16 F 1.35097 * 120.10695 * 180.02562 * 15 14 13 17 17 C 1.38483 * 119.77892 * 0.02904 * 15 14 13 18 18 C 1.37838 * 120.20317 * 359.97438 * 17 15 14 19 19 C 1.38568 * 108.55369 * 359.97438 * 13 12 10 20 20 N 1.39737 * 111.62949 * 0.02562 * 19 13 12 21 21 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 23 23 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 24 24 H 1.09004 * 110.41326 * 237.69276 * 12 10 9 25 25 H 1.08994 * 110.42357 * 0.15162 * 12 10 9 26 26 H 1.07995 * 119.93076 * 0.02723 * 14 13 12 27 27 H 1.07998 * 119.89091 * 180.02562 * 17 15 14 28 28 H 1.08001 * 119.84078 * 179.97438 * 18 17 15 29 29 H 0.96998 * 124.96897 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 1 2.9592 -3.5486 0.8154 12 6 1.5001 -5.0009 0.1251 13 6 1.8485 -5.7503 -1.1413 14 6 1.4723 -7.0041 -1.5846 15 6 1.9307 -7.4772 -2.8019 16 9 1.5622 -8.7027 -3.2348 17 6 2.7682 -6.6902 -3.5744 18 6 3.1450 -5.4393 -3.1347 19 6 2.6861 -4.9557 -1.9076 20 7 2.9459 -3.7316 -1.2857 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5568 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 1.8492 -5.5497 0.9998 25 1 0.4247 -4.8335 0.1843 26 1 0.8187 -7.6156 -0.9803 27 1 3.1266 -7.0574 -4.5247 28 1 3.7988 -4.8306 -3.7417 29 1 3.5072 -3.0303 -1.6516 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261023651.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:10 Heat of formation + Delta-G solvation = -42.934064 kcal Electronic energy + Delta-G solvation = -14244.915893 eV Core-core repulsion = 11659.959056 eV Total energy + Delta-G solvation = -2584.956837 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.61480 -41.20847 -37.41457 -34.94918 -32.98179 -31.67510 -29.52798 -28.38955 -25.20552 -23.27819 -22.34603 -21.73739 -18.71922 -18.32282 -17.75615 -17.13141 -16.68769 -16.37646 -15.95649 -15.30645 -14.73682 -14.29270 -13.97522 -13.75430 -13.73010 -13.49205 -13.19307 -13.03778 -12.80532 -12.44270 -12.24896 -11.80062 -11.69896 -11.16383 -10.66515 -10.58271 -9.81294 -8.21059 -8.08277 -6.30825 0.37063 0.51092 1.40638 1.42124 1.49906 2.39690 2.60994 2.77857 3.15066 3.39834 3.76778 3.89350 4.13522 4.33038 4.37175 4.48986 4.54585 4.82592 4.97661 5.07110 5.13287 5.23880 5.35260 5.40032 5.50457 5.60038 5.78530 5.92169 6.18934 6.33740 6.84442 7.08358 7.38275 8.91178 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.057294 B = 0.006074 C = 0.005815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.593407 B = 4608.898884 C = 4813.883836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.064 0.936 9 C 0.021 3.979 10 C 0.155 3.845 11 H 0.074 0.926 12 C -0.077 4.077 13 C -0.166 4.166 14 C -0.094 4.094 15 C 0.011 3.989 16 F -0.152 7.152 17 C -0.099 4.099 18 C -0.168 4.168 19 C 0.184 3.816 20 N -0.722 5.722 21 H 0.262 0.738 22 H -0.011 1.011 23 H 0.006 0.994 24 H 0.102 0.898 25 H 0.077 0.923 26 H 0.144 0.856 27 H 0.157 0.843 28 H 0.144 0.856 29 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.139 -11.364 -3.824 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.082 0.918 9 C -0.017 4.017 10 C 0.050 3.950 11 H 0.092 0.908 12 C -0.115 4.115 13 C -0.171 4.171 14 C -0.113 4.113 15 C -0.010 4.010 16 F -0.131 7.131 17 C -0.118 4.118 18 C -0.191 4.191 19 C 0.077 3.923 20 N -0.350 5.350 21 H 0.071 0.929 22 H 0.008 0.992 23 H 0.025 0.975 24 H 0.120 0.880 25 H 0.095 0.905 26 H 0.162 0.838 27 H 0.175 0.825 28 H 0.162 0.838 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 5.961 -11.168 -3.676 13.183 hybrid contribution 0.079 1.243 -0.163 1.256 sum 6.040 -9.925 -3.839 12.236 Atomic orbital electron populations 1.70087 1.07821 1.27733 1.51649 1.25923 0.95633 1.03201 0.94917 0.85551 0.78221 0.78443 0.79109 1.19290 1.21419 1.19171 1.21524 0.93435 0.91826 1.50306 0.91813 1.19412 0.94073 0.92935 0.95273 1.21448 0.93602 0.94566 0.85427 0.90828 1.21153 1.01048 0.93462 0.95800 1.19889 1.03092 0.95271 0.98822 1.20354 1.00593 0.95062 0.95328 1.17314 1.04636 0.82760 0.96310 1.91419 1.90924 1.40938 1.89839 1.20928 0.97075 0.93381 1.00449 1.20370 1.06144 0.97236 0.95356 1.18851 0.93539 0.86811 0.93086 1.45019 1.53338 1.15546 1.21124 0.92898 0.99246 0.97534 0.88010 0.90465 0.83825 0.82503 0.83825 0.74792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 13.29 21.45 0.28 -55.15 15 2 C 0.00 0.07 5.46 84.65 0.46 0.53 15 3 Si 0.96 42.79 29.54 68.60 2.03 44.81 15 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 15 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 7 C -0.53 -28.36 8.96 25.60 0.23 -28.13 15 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 15 9 C 0.02 1.04 4.46 29.85 0.13 1.18 15 10 C 0.15 5.97 3.61 45.24 0.16 6.13 15 11 H 0.07 2.74 8.14 -2.39 -0.02 2.72 15 12 C -0.08 -2.54 6.58 30.26 0.20 -2.34 15 13 C -0.17 -5.34 6.23 -19.63 -0.12 -5.47 15 14 C -0.09 -2.71 10.02 22.30 0.22 -2.49 15 15 C 0.01 0.31 7.31 22.37 0.16 0.47 15 16 F -0.15 -4.25 17.27 44.97 0.78 -3.47 15 17 C -0.10 -2.52 10.00 22.23 0.22 -2.30 15 18 C -0.17 -4.63 10.07 22.52 0.23 -4.40 15 19 C 0.18 6.06 7.03 38.30 0.27 6.33 15 20 N -0.72 -25.81 6.02 -317.31 -1.91 -27.72 15 21 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 22 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 15 23 H 0.01 0.34 8.14 -2.39 -0.02 0.32 15 24 H 0.10 2.78 8.14 -2.38 -0.02 2.76 15 25 H 0.08 2.65 7.70 -2.39 -0.02 2.63 15 26 H 0.14 3.52 8.06 -2.91 -0.02 3.50 15 27 H 0.16 3.03 8.06 -2.91 -0.02 3.01 15 28 H 0.14 3.30 8.06 -2.91 -0.02 3.27 15 29 H 0.41 14.21 8.96 -92.71 -0.83 13.38 15 Total: -1.00 -61.02 256.61 3.68 -57.34 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.33 Total: 14.68 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 2.17 Total: -30.49 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -1.62 Total: -82.87 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.78 Total: -3.47 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -61.02 3.68 -57.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023651.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.406 kcal (2) G-P(sol) polarization free energy of solvation -61.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds