Wall clock time and date at job start Mon Mar 30 2020 02:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 H 1.09005 * 110.26261 * 305.69493 * 10 9 7 12 12 C 1.53740 * 110.29764 * 183.63453 * 10 9 7 13 13 C 1.51224 * 104.56320 * 241.06827 * 12 10 9 14 14 C 1.38190 * 130.95824 * 179.97438 * 13 12 10 15 15 C 1.38412 * 120.13705 * 180.02562 * 14 13 12 16 16 F 1.35098 * 120.10969 * 179.97438 * 15 14 13 17 17 C 1.38472 * 119.77833 * 0.02562 * 15 14 13 18 18 C 1.37845 * 120.20575 * 359.96212 * 17 15 14 19 19 C 1.38568 * 108.55123 * 0.02562 * 13 12 10 20 20 N 1.39943 * 111.66035 * 359.94535 * 19 13 12 21 21 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 23 23 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 24 24 H 1.08997 * 110.41867 * 359.83518 * 12 10 9 25 25 H 1.08999 * 110.41644 * 122.18120 * 12 10 9 26 26 H 1.08006 * 119.93110 * 0.02562 * 14 13 12 27 27 H 1.08004 * 119.89696 * 179.97438 * 17 15 14 28 28 H 1.07998 * 119.84161 * 180.02562 * 18 17 15 29 29 H 0.97001 * 125.08310 * 180.02562 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9442 -3.5613 -0.8300 12 6 1.4982 -5.0026 -0.0909 13 6 1.8696 -5.7324 1.1805 14 6 1.5011 -6.9786 1.6502 15 6 1.9817 -7.4330 2.8661 16 9 1.6206 -8.6513 3.3251 17 6 2.8329 -6.6343 3.6110 18 6 3.2023 -5.3908 3.1447 19 6 2.7208 -4.9261 1.9190 20 7 2.9704 -3.7100 1.2730 21 1 -0.4850 -0.8401 -0.0004 22 1 0.6242 -2.5567 0.8904 23 1 0.6248 -2.5571 -0.8896 24 1 0.4219 -4.8359 -0.1330 25 1 1.8299 -5.5639 -0.9644 26 1 0.8367 -7.5994 1.0674 27 1 3.2087 -6.9867 4.5602 28 1 3.8669 -4.7729 3.7303 29 1 3.5385 -3.0027 1.6162 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261023652.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:15 Heat of formation + Delta-G solvation = -30.382978 kcal Electronic energy + Delta-G solvation = -14280.585250 eV Core-core repulsion = 11696.172669 eV Total energy + Delta-G solvation = -2584.412581 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.47409 -39.97497 -36.14747 -33.26411 -31.77288 -29.88455 -28.32199 -26.45089 -23.29204 -22.07864 -21.16335 -20.41297 -17.27445 -17.01084 -16.59366 -15.92554 -15.26497 -14.72062 -14.13666 -13.76539 -13.54750 -13.12274 -12.72722 -12.54513 -12.43144 -12.00663 -11.84148 -11.19830 -10.96573 -10.59907 -10.56697 -10.52675 -10.14606 -9.36319 -8.73568 -8.62637 -8.43927 -6.83121 -6.45851 -4.16664 1.48720 1.67792 3.37224 3.38267 3.57292 3.87249 3.94491 4.45734 4.56064 4.88214 5.08945 5.24628 5.32446 5.51820 5.61769 5.66283 5.71016 6.09812 6.21783 6.27855 6.40674 6.47846 6.55867 6.70044 6.95835 7.18299 7.30970 7.61362 8.04443 8.32648 8.37146 8.76622 9.55791 10.94624 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.056648 B = 0.006129 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.160584 B = 4567.345254 C = 4779.889732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 1.068 2.932 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.048 0.952 9 C -0.001 4.001 10 C 0.155 3.845 11 H 0.069 0.931 12 C -0.083 4.083 13 C -0.152 4.152 14 C -0.091 4.091 15 C 0.018 3.982 16 F -0.152 7.152 17 C -0.104 4.104 18 C -0.170 4.170 19 C 0.206 3.794 20 N -0.714 5.714 21 H 0.269 0.731 22 H 0.015 0.985 23 H 0.019 0.981 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.127 0.873 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.254 -11.038 3.311 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.896 3.104 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.642 4.642 8 H 0.066 0.934 9 C -0.038 4.038 10 C 0.050 3.950 11 H 0.087 0.913 12 C -0.120 4.120 13 C -0.157 4.157 14 C -0.111 4.111 15 C -0.004 4.004 16 F -0.131 7.131 17 C -0.123 4.123 18 C -0.194 4.194 19 C 0.097 3.903 20 N -0.342 5.342 21 H 0.080 0.920 22 H 0.033 0.967 23 H 0.037 0.963 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.145 0.855 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 5.021 -9.284 3.153 11.016 hybrid contribution 0.356 -1.530 0.289 1.597 sum 5.377 -10.814 3.442 12.558 Atomic orbital electron populations 1.70787 1.06913 1.30679 1.46072 1.25833 0.96523 1.02748 0.93673 0.83550 0.74918 0.75445 0.76463 1.20726 1.21427 1.21505 1.21926 0.94029 0.91847 1.56357 0.93405 1.19684 0.94399 0.93005 0.96758 1.21528 0.93830 0.94628 0.84992 0.91303 1.21230 1.01613 0.94720 0.94465 1.19775 1.02410 0.94733 0.98784 1.20175 1.00557 0.95507 0.94855 1.17116 1.04290 0.82909 0.96040 1.91417 1.91129 1.41589 1.88985 1.20617 0.97970 0.93970 0.99740 1.20103 1.06218 0.97046 0.96011 1.18624 0.92629 0.87114 0.91897 1.45168 1.52038 1.15371 1.21579 0.92034 0.96713 0.96307 0.89793 0.90439 0.85528 0.85325 0.85821 0.74692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.17 13.65 55.43 0.76 -26.41 15 2 C 0.02 0.46 5.46 -17.82 -0.10 0.37 15 3 Si 1.07 24.49 29.90 -169.99 -5.08 19.41 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 15 6 H -0.29 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.60 -16.16 8.90 -34.44 -0.31 -16.46 15 8 H 0.05 1.24 7.74 -52.48 -0.41 0.84 15 9 C 0.00 -0.02 3.78 -27.88 -0.11 -0.12 15 10 C 0.15 3.02 3.62 -67.53 -0.24 2.77 15 11 H 0.07 1.33 8.14 -51.93 -0.42 0.90 15 12 C -0.08 -1.38 6.58 -27.24 -0.18 -1.56 15 13 C -0.15 -2.54 6.23 -104.26 -0.65 -3.19 15 14 C -0.09 -1.39 10.02 -39.53 -0.40 -1.79 15 15 C 0.02 0.27 7.31 -39.43 -0.29 -0.02 15 16 F -0.15 -2.29 17.27 2.25 0.04 -2.26 15 17 C -0.10 -1.46 10.00 -39.64 -0.40 -1.86 15 18 C -0.17 -2.54 10.07 -39.20 -0.39 -2.94 15 19 C 0.21 3.53 7.04 -83.51 -0.59 2.94 15 20 N -0.71 -13.12 6.01 -51.59 -0.31 -13.43 15 21 H 0.27 8.02 7.22 -40.82 -0.29 7.72 15 22 H 0.01 0.38 8.01 -51.93 -0.42 -0.03 15 23 H 0.02 0.47 8.01 -51.93 -0.42 0.05 15 24 H 0.08 1.41 7.70 -51.93 -0.40 1.01 15 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 26 H 0.13 1.67 8.06 -52.48 -0.42 1.24 15 27 H 0.13 1.48 8.06 -52.48 -0.42 1.06 15 28 H 0.12 1.60 8.06 -52.49 -0.42 1.17 15 29 H 0.41 7.39 8.93 -40.82 -0.36 7.02 15 LS Contribution 255.22 15.07 3.85 3.85 Total: -1.00 -29.35 255.22 -7.60 -36.95 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -3.21 Total: 3.75 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -3.64 Total: -21.86 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.45 Total: -39.84 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.35 -7.60 -36.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261023652.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.567 kcal (2) G-P(sol) polarization free energy of solvation -29.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds