Wall clock time and date at job start Mon Mar 30 2020 03:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86801 * 120.00127 * 2 1 4 4 H 1.48492 * 109.47365 * 240.00468 * 3 2 1 5 5 H 1.48502 * 109.46952 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46876 * 120.00467 * 3 2 1 7 7 C 1.40102 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00198 * 180.02562 * 7 2 1 9 9 C 1.41537 * 119.99920 * 359.97438 * 7 2 1 10 10 N 1.34013 * 120.64888 * 0.02562 * 9 7 2 11 11 C 1.32082 * 120.42889 * 180.02562 * 10 9 7 12 12 N 1.38389 * 119.06239 * 180.02562 * 11 10 9 13 13 N 1.32709 * 121.88240 * 0.10842 * 11 10 9 14 14 C 1.32600 * 121.22190 * 359.92442 * 13 11 10 15 15 C 1.37837 * 119.24484 * 359.86748 * 14 13 11 16 16 C 1.50347 * 121.82074 * 180.34609 * 15 14 13 17 17 O 1.42826 * 110.13438 * 344.00883 * 16 15 14 18 18 C 1.43195 * 113.20606 * 51.46191 * 17 16 15 19 19 C 1.50596 * 119.46839 * 179.56167 * 14 13 11 20 20 H 0.96997 * 120.00445 * 359.97438 * 1 2 3 21 21 H 0.97003 * 119.99573 * 0.02562 * 12 11 10 22 22 H 0.96995 * 120.00223 * 180.02562 * 12 11 10 23 23 H 1.08993 * 109.35963 * 223.80599 * 16 15 14 24 24 H 1.08999 * 109.24947 * 104.14602 * 16 15 14 25 25 H 1.09001 * 109.61223 * 49.25567 * 18 17 16 26 26 H 1.09006 * 109.61717 * 169.76763 * 18 17 16 27 27 H 1.09000 * 109.43502 * 43.11308 * 19 14 13 28 28 H 1.09004 * 109.44150 * 283.23889 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0072 -1.2133 -0.0005 8 1 3.0872 -1.2133 -0.0001 9 6 1.2995 -2.4391 -0.0005 10 7 -0.0405 -2.4542 -0.0005 11 6 -0.6965 -3.6006 0.0000 12 7 -2.0803 -3.5833 -0.0006 13 7 -0.0666 -4.7687 0.0026 14 6 1.2577 -4.8354 0.0034 15 6 1.9908 -3.6681 -0.0014 16 6 3.4942 -3.6763 -0.0085 17 8 3.9806 -4.9676 0.3601 18 6 3.3956 -6.0295 -0.4019 19 6 1.9316 -6.1821 0.0165 20 1 -0.4851 0.8400 0.0004 21 1 -2.5547 -2.7372 -0.0017 22 1 -2.5758 -4.4171 0.0001 23 1 3.8629 -2.9353 0.7008 24 1 3.8502 -3.4278 -1.0083 25 1 3.4496 -5.7905 -1.4640 26 1 3.9310 -6.9586 -0.2059 27 1 1.4230 -6.8490 -0.6797 28 1 1.8834 -6.6022 1.0211 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038403.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:26 Heat of formation + Delta-G solvation = -26.068303 kcal Electronic energy + Delta-G solvation = -14986.765845 eV Core-core repulsion = 12422.460324 eV Total energy + Delta-G solvation = -2564.305521 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27018 -39.00653 -36.24965 -35.15384 -33.81292 -31.62758 -31.48890 -28.49301 -25.70244 -25.14196 -22.96579 -21.54586 -19.68439 -18.37759 -17.46371 -17.17035 -16.76192 -16.33042 -16.06673 -15.39771 -15.23899 -14.65163 -14.35577 -14.14666 -13.46392 -13.06809 -12.97780 -12.66524 -12.57582 -12.02338 -11.84024 -11.65346 -11.24382 -10.86680 -10.40859 -10.29837 -9.29103 -8.65829 -8.31792 -6.75636 0.96109 1.05034 1.42506 1.54894 1.61542 2.21217 2.81823 2.88607 3.10837 3.78323 3.87323 4.11887 4.37041 4.48240 4.58600 4.63725 4.71512 4.89033 4.91150 5.00707 5.04905 5.21395 5.56945 5.84273 6.06008 6.30438 6.42625 6.66527 6.92179 6.95499 7.29371 8.32433 8.44352 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027123 B = 0.011838 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.072110 B = 2364.639884 C = 3356.271981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.025 3.975 3 Si 0.991 3.009 4 H -0.255 1.255 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.445 4.445 8 H 0.103 0.897 9 C 0.274 3.726 10 N -0.594 5.594 11 C 0.532 3.468 12 N -0.826 5.826 13 N -0.671 5.671 14 C 0.186 3.814 15 C -0.387 4.387 16 C 0.153 3.847 17 O -0.396 6.396 18 C 0.065 3.935 19 C -0.090 4.090 20 H 0.282 0.718 21 H 0.408 0.592 22 H 0.408 0.592 23 H 0.088 0.912 24 H 0.049 0.951 25 H 0.054 0.946 26 H 0.133 0.867 27 H 0.097 0.903 28 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 -3.620 -1.190 5.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.199 4.199 3 Si 0.810 3.190 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.479 4.479 8 H 0.121 0.879 9 C 0.143 3.857 10 N -0.324 5.324 11 C 0.171 3.829 12 N -0.377 5.377 13 N -0.403 5.403 14 C 0.047 3.953 15 C -0.397 4.397 16 C 0.075 3.925 17 O -0.315 6.315 18 C -0.012 4.012 19 C -0.128 4.128 20 H 0.093 0.907 21 H 0.238 0.762 22 H 0.239 0.761 23 H 0.106 0.894 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.151 0.849 27 H 0.115 0.885 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.370 -3.541 -1.045 4.388 hybrid contribution -0.006 0.800 -0.152 0.814 sum 2.365 -2.742 -1.197 3.813 Atomic orbital electron populations 1.70176 1.09125 1.29541 1.27493 1.27103 0.95760 1.04788 0.92266 0.85134 0.78616 0.74904 0.80357 1.17929 1.19367 1.18059 1.20064 0.95208 0.89590 1.43027 0.87925 1.18830 0.87566 0.92772 0.86528 1.68939 1.09223 1.25042 1.29223 1.19991 0.88221 0.86115 0.88557 1.41342 1.00509 1.11314 1.84543 1.67572 1.10490 1.28038 1.34200 1.20812 0.88679 0.95403 0.90435 1.21366 0.98488 0.95192 1.24688 1.20663 0.88406 0.84169 0.99249 1.87933 1.65300 1.15661 1.62572 1.22759 0.91545 0.91701 0.95149 1.20961 0.96288 0.91976 1.03570 0.90746 0.76174 0.76129 0.89409 0.93357 0.92763 0.84920 0.88500 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.85 11.52 21.85 0.25 -38.60 15 2 C 0.02 1.23 5.50 85.32 0.47 1.70 15 3 Si 0.99 36.39 29.56 68.60 2.03 38.42 15 4 H -0.26 -8.99 7.11 99.48 0.71 -8.29 15 5 H -0.27 -9.46 7.11 99.48 0.71 -8.75 15 6 H -0.26 -9.10 7.11 99.48 0.71 -8.39 15 7 C -0.45 -23.37 8.71 23.54 0.20 -23.17 15 8 H 0.10 4.89 6.38 -2.91 -0.02 4.87 15 9 C 0.27 15.36 6.58 40.30 0.27 15.62 15 10 N -0.59 -33.91 8.07 -191.43 -1.55 -35.46 15 11 C 0.53 27.66 8.66 261.58 2.27 29.92 15 12 N -0.83 -34.00 9.07 -59.87 -0.54 -34.54 15 13 N -0.67 -33.71 10.36 -186.66 -1.93 -35.65 15 14 C 0.19 8.86 6.68 42.31 0.28 9.14 15 15 C -0.39 -19.46 5.87 -19.39 -0.11 -19.57 15 16 C 0.15 6.43 5.81 71.12 0.41 6.85 15 17 O -0.40 -14.97 10.81 -148.98 -1.61 -16.58 15 18 C 0.07 1.99 6.84 71.99 0.49 2.49 15 19 C -0.09 -3.18 6.27 29.82 0.19 -2.99 15 20 H 0.28 13.27 8.29 -92.71 -0.77 12.50 15 21 H 0.41 15.85 8.94 -92.71 -0.83 15.02 15 22 H 0.41 14.14 8.94 -92.71 -0.83 13.31 15 23 H 0.09 3.69 7.12 -2.39 -0.02 3.67 15 24 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.05 1.61 8.07 -2.39 -0.02 1.59 15 26 H 0.13 2.91 8.14 -2.38 -0.02 2.90 15 27 H 0.10 3.06 8.14 -2.39 -0.02 3.04 15 28 H 0.09 2.91 8.14 -2.38 -0.02 2.89 15 Total: -1.00 -66.83 241.94 0.68 -66.15 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -0.44 Total: 36.27 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: 4.47 Total: 19.98 kcal Atomic # 7 Polarization: -140.47 SS G_CDS: -3.77 Total: -144.24 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -1.61 Total: -16.58 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Total: -66.83 0.68 -66.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038403.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.083 kcal (2) G-P(sol) polarization free energy of solvation -66.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds