Wall clock time and date at job start Mon Mar 30 2020 03:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86807 * 119.99768 * 2 1 4 4 H 1.48499 * 109.46821 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46949 * 299.99687 * 3 2 1 6 6 H 1.48500 * 109.47299 * 59.99510 * 3 2 1 7 7 C 1.40103 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.41531 * 120.00034 * 359.97438 * 7 2 1 10 10 N 1.34060 * 120.65223 * 359.97438 * 9 7 2 11 11 C 1.32082 * 120.42852 * 180.02562 * 10 9 7 12 12 N 1.38385 * 119.03364 * 180.02562 * 11 10 9 13 13 N 1.32724 * 121.93177 * 0.02562 * 11 10 9 14 14 C 1.32502 * 121.23411 * 359.95527 * 13 11 10 15 15 C 1.38208 * 119.15677 * 0.03455 * 14 13 11 16 16 C 1.51346 * 110.02753 * 180.18167 * 15 14 13 17 17 H 1.09001 * 110.26811 * 257.95676 * 16 15 14 18 18 O 1.42897 * 110.50373 * 135.68232 * 16 15 14 19 19 C 1.54426 * 104.97993 * 16.75660 * 16 15 14 20 20 C 1.51220 * 131.14775 * 180.02562 * 14 13 11 21 21 H 0.97004 * 120.00176 * 0.02562 * 1 2 3 22 22 H 0.97004 * 120.00090 * 359.97438 * 12 11 10 23 23 H 0.97000 * 119.99815 * 179.97438 * 12 11 10 24 24 H 0.96698 * 114.00564 * 182.91533 * 18 16 15 25 25 H 1.09002 * 110.81929 * 215.81015 * 19 16 15 26 26 H 1.09002 * 110.81570 * 92.46971 * 19 16 15 27 27 H 1.09003 * 110.29796 * 44.00527 * 20 14 13 28 28 H 1.08997 * 110.38275 * 281.90864 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2126 6 1 1.8819 2.3966 1.2124 7 6 2.0073 -1.2133 0.0005 8 1 3.0873 -1.2133 0.0010 9 6 1.2997 -2.4390 0.0016 10 7 -0.0409 -2.4543 0.0027 11 6 -0.6968 -3.6008 0.0042 12 7 -2.0805 -3.5829 0.0047 13 7 -0.0677 -4.7694 0.0053 14 6 1.2556 -4.8374 0.0040 15 6 1.9900 -3.6666 0.0022 16 6 3.4700 -3.9831 -0.0036 17 1 3.8875 -3.8542 0.9950 18 8 4.1562 -3.1505 -0.9406 19 6 3.5600 -5.4631 -0.4352 20 6 2.1909 -6.0257 0.0042 21 1 -0.4850 0.8401 -0.0004 22 1 -2.5546 -2.7366 0.0043 23 1 -2.5763 -4.4166 0.0055 24 1 5.1010 -3.3412 -1.0179 25 1 4.3723 -5.9698 0.0859 26 1 3.6841 -5.5448 -1.5151 27 1 1.8462 -6.7784 -0.7049 28 1 2.2611 -6.4533 1.0043 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038436.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:41 Heat of formation + Delta-G solvation = -27.973647 kcal Electronic energy + Delta-G solvation = -14990.890482 eV Core-core repulsion = 12426.502339 eV Total energy + Delta-G solvation = -2564.388143 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.22017 -38.43342 -36.11206 -35.82012 -33.86429 -32.75380 -29.98905 -27.98156 -27.16364 -23.68473 -22.45230 -21.49913 -19.51430 -18.39842 -17.89136 -17.41251 -16.59281 -16.02376 -15.58617 -15.37422 -14.86918 -14.64292 -14.34163 -13.75398 -13.03620 -12.94838 -12.71125 -12.62605 -12.45621 -12.11148 -11.84225 -11.67766 -11.03762 -10.71283 -10.56541 -10.35166 -9.25206 -8.65148 -8.27783 -6.64490 0.99368 1.07430 1.40217 1.56921 1.59085 2.23122 2.77522 2.92059 3.60822 3.74859 3.91240 4.07740 4.21407 4.38157 4.67298 4.76572 4.85953 4.95137 5.11262 5.23188 5.26877 5.36984 5.63166 5.92007 6.22652 6.46326 6.71222 6.98112 6.99885 7.21767 7.38418 8.36001 8.48276 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024963 B = 0.013114 C = 0.008756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.403769 B = 2134.668595 C = 3197.062276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.746 5.746 2 C 0.019 3.981 3 Si 0.991 3.009 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.431 4.431 8 H 0.097 0.903 9 C 0.281 3.719 10 N -0.594 5.594 11 C 0.534 3.466 12 N -0.825 5.825 13 N -0.668 5.668 14 C 0.166 3.834 15 C -0.370 4.370 16 C 0.180 3.820 17 H 0.053 0.947 18 O -0.574 6.574 19 C -0.131 4.131 20 C -0.054 4.054 21 H 0.280 0.720 22 H 0.409 0.591 23 H 0.409 0.591 24 H 0.382 0.618 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 -4.705 0.464 7.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.368 5.368 2 C -0.203 4.203 3 Si 0.810 3.190 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.465 4.465 8 H 0.115 0.885 9 C 0.152 3.848 10 N -0.324 5.324 11 C 0.173 3.827 12 N -0.377 5.377 13 N -0.400 5.400 14 C 0.026 3.974 15 C -0.380 4.380 16 C 0.120 3.880 17 H 0.071 0.929 18 O -0.380 6.380 19 C -0.169 4.169 20 C -0.092 4.092 21 H 0.090 0.910 22 H 0.239 0.761 23 H 0.239 0.761 24 H 0.230 0.770 25 H 0.133 0.867 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.027 -4.333 0.397 5.928 hybrid contribution 0.736 0.549 0.062 0.920 sum 4.762 -3.784 0.459 6.100 Atomic orbital electron populations 1.70204 1.09001 1.29154 1.28478 1.27169 0.95811 1.04905 0.92459 0.85041 0.79521 0.75593 0.78812 1.17667 1.19130 1.18820 1.20111 0.95088 0.89602 1.41710 0.88537 1.18579 0.87138 0.93010 0.86110 1.69041 1.08941 1.24946 1.29465 1.19924 0.88234 0.85756 0.88749 1.41300 1.00373 1.11323 1.84679 1.66888 1.10590 1.28271 1.34267 1.21877 0.88893 0.96456 0.90192 1.21740 0.97041 0.95451 1.23779 1.20643 0.87520 0.89043 0.90791 0.92885 1.86738 1.25724 1.61784 1.63798 1.23018 0.96926 0.94585 1.02401 1.20887 0.91669 0.93382 1.03243 0.90962 0.76113 0.76100 0.76961 0.86690 0.90369 0.89613 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.97 11.52 21.85 0.25 -40.72 15 2 C 0.02 1.02 5.50 85.32 0.47 1.49 15 3 Si 0.99 39.18 29.56 68.60 2.03 41.20 15 4 H -0.25 -9.70 7.11 99.48 0.71 -8.99 15 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 7 C -0.43 -24.46 8.86 23.53 0.21 -24.25 15 8 H 0.10 5.26 6.60 -2.91 -0.02 5.24 15 9 C 0.28 16.60 6.58 40.25 0.26 16.86 15 10 N -0.59 -35.18 8.07 -191.54 -1.55 -36.72 15 11 C 0.53 28.56 8.66 261.58 2.27 30.83 15 12 N -0.83 -34.91 9.07 -59.87 -0.54 -35.46 15 13 N -0.67 -34.36 10.44 -185.82 -1.94 -36.30 15 14 C 0.17 7.95 7.37 42.62 0.31 8.26 15 15 C -0.37 -19.01 5.84 -19.03 -0.11 -19.13 15 16 C 0.18 7.02 4.02 30.54 0.12 7.14 15 17 H 0.05 1.97 8.14 -2.39 -0.02 1.95 15 18 O -0.57 -22.21 11.98 -148.98 -1.78 -23.99 15 19 C -0.13 -3.80 6.79 31.56 0.21 -3.58 15 20 C -0.05 -1.81 6.77 30.49 0.21 -1.60 15 21 H 0.28 13.73 8.29 -92.71 -0.77 12.96 15 22 H 0.41 16.33 8.94 -92.71 -0.83 15.50 15 23 H 0.41 14.50 8.94 -92.71 -0.83 13.68 15 24 H 0.38 9.66 9.11 -74.06 -0.67 8.98 15 25 H 0.11 2.29 8.14 -2.39 -0.02 2.27 15 26 H 0.08 2.23 8.11 -2.39 -0.02 2.21 15 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 15 28 H 0.10 2.88 8.14 -2.39 -0.02 2.86 15 Total: -1.00 -74.64 244.90 -0.68 -75.32 By element: Atomic # 1 Polarization: 41.75 SS G_CDS: -1.10 Total: 40.65 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: 3.95 Total: 16.02 kcal Atomic # 7 Polarization: -145.43 SS G_CDS: -3.78 Total: -149.20 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -1.78 Total: -23.99 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.20 kcal Total: -74.64 -0.68 -75.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038436.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.342 kcal (2) G-P(sol) polarization free energy of solvation -74.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds