Wall clock time and date at job start Mon Mar 30 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86801 * 119.99728 * 2 1 4 4 H 1.48497 * 109.47213 * 85.01498 * 3 2 1 5 5 H 1.48501 * 109.47083 * 325.01406 * 3 2 1 6 6 H 1.48504 * 109.47034 * 205.01357 * 3 2 1 7 7 C 1.40101 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99807 * 187.05221 * 7 2 1 9 9 C 1.41536 * 120.00068 * 7.05532 * 7 2 1 10 10 N 1.34050 * 120.65068 * 7.02473 * 9 7 2 11 11 C 1.32088 * 120.42248 * 179.62068 * 10 9 7 12 12 N 1.38394 * 119.03040 * 180.30532 * 11 10 9 13 13 N 1.32712 * 121.93644 * 0.71177 * 11 10 9 14 14 C 1.32503 * 121.23190 * 359.61929 * 13 11 10 15 15 C 1.38206 * 119.15890 * 0.02562 * 14 13 11 16 16 C 1.51043 * 109.94997 * 179.97438 * 15 14 13 17 17 H 1.08999 * 110.30530 * 101.90919 * 16 15 14 18 18 O 1.42901 * 110.31356 * 224.07977 * 16 15 14 19 19 C 1.54423 * 105.13173 * 342.99448 * 16 15 14 20 20 C 1.51218 * 131.14685 * 180.02562 * 14 13 11 21 21 H 0.96995 * 119.99988 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00262 * 180.39476 * 12 11 10 23 23 H 0.96999 * 119.99880 * 0.39833 * 12 11 10 24 24 H 0.96696 * 114.00012 * 179.97438 * 18 16 15 25 25 H 1.08994 * 110.81671 * 267.86624 * 19 16 15 26 26 H 1.09002 * 110.98670 * 144.39687 * 19 16 15 27 27 H 1.08997 * 110.29646 * 315.97140 * 20 14 13 28 28 H 1.08997 * 110.29898 * 78.11973 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 1.3947 5 1 1.4948 2.6200 -0.8028 6 1 3.5870 1.4121 -0.5920 7 6 2.0073 -1.2133 0.0005 8 1 3.0812 -1.2168 0.1154 9 6 1.3077 -2.4345 -0.1495 10 7 -0.0026 -2.4411 -0.4324 11 6 -0.6495 -3.5834 -0.5788 12 7 -2.0007 -3.5565 -0.8770 13 7 -0.0437 -4.7560 -0.4406 14 6 1.2479 -4.8325 -0.1548 15 6 1.9732 -3.6665 0.0017 16 6 3.4126 -3.9939 0.3216 17 1 4.0341 -3.8734 -0.5657 18 8 3.8882 -3.1585 1.3789 19 6 3.3998 -5.4714 0.7704 20 6 2.1528 -6.0268 0.0490 21 1 -0.4850 0.8400 -0.0004 22 1 -2.4909 -4.3870 -0.9819 23 1 -2.4576 -2.7073 -0.9812 24 1 4.8078 -3.3242 1.6277 25 1 3.2868 -5.5468 1.8519 26 1 4.3010 -5.9878 0.4397 27 1 1.6586 -6.7740 0.6699 28 1 2.4327 -6.4577 -0.9123 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038437.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:46 Heat of formation + Delta-G solvation = -28.746119 kcal Electronic energy + Delta-G solvation = -14992.709256 eV Core-core repulsion = 12428.287616 eV Total energy + Delta-G solvation = -2564.421640 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.23189 -38.43733 -36.11122 -35.82132 -33.87330 -32.76374 -29.99497 -27.99145 -27.16173 -23.69031 -22.45448 -21.48819 -19.51798 -18.40207 -17.92463 -17.41092 -16.60422 -16.02897 -15.58719 -15.37557 -14.84689 -14.66216 -14.31876 -13.73956 -13.06121 -12.94545 -12.69998 -12.63472 -12.48475 -12.11163 -11.90923 -11.61671 -11.03612 -10.72365 -10.56090 -10.36161 -9.24005 -8.66219 -8.32365 -6.62774 0.99612 1.06995 1.40054 1.54746 1.60406 2.22872 2.76593 2.91684 3.61194 3.74832 3.90981 4.07826 4.21848 4.38891 4.67269 4.76050 4.85849 4.94745 5.11397 5.23211 5.26249 5.36906 5.63139 5.91939 6.21101 6.46078 6.71034 6.97531 6.99187 7.22246 7.38041 8.35138 8.47547 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.025016 B = 0.013091 C = 0.008787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.002981 B = 2138.401182 C = 3185.908863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.022 3.978 3 Si 0.991 3.009 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.254 1.254 7 C -0.432 4.432 8 H 0.095 0.905 9 C 0.284 3.716 10 N -0.597 5.597 11 C 0.535 3.465 12 N -0.825 5.825 13 N -0.668 5.668 14 C 0.166 3.834 15 C -0.370 4.370 16 C 0.179 3.821 17 H 0.054 0.946 18 O -0.573 6.573 19 C -0.131 4.131 20 C -0.054 4.054 21 H 0.281 0.719 22 H 0.409 0.591 23 H 0.408 0.592 24 H 0.382 0.618 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.085 0.915 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.771 -4.666 0.118 7.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.200 4.200 3 Si 0.811 3.189 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.177 1.177 7 C -0.465 4.465 8 H 0.113 0.887 9 C 0.155 3.845 10 N -0.327 5.327 11 C 0.174 3.826 12 N -0.377 5.377 13 N -0.400 5.400 14 C 0.026 3.974 15 C -0.380 4.380 16 C 0.120 3.880 17 H 0.072 0.928 18 O -0.380 6.380 19 C -0.169 4.169 20 C -0.092 4.092 21 H 0.092 0.908 22 H 0.239 0.761 23 H 0.239 0.761 24 H 0.230 0.770 25 H 0.095 0.905 26 H 0.134 0.866 27 H 0.103 0.897 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.056 -4.305 -0.107 5.916 hybrid contribution 0.748 0.558 0.077 0.937 sum 4.805 -3.747 -0.030 6.093 Atomic orbital electron populations 1.70140 1.09128 1.29419 1.28541 1.27144 0.95747 1.04916 0.92240 0.85077 0.79180 0.75367 0.79313 1.18763 1.19078 1.17729 1.20011 0.95545 0.89826 1.41167 0.88705 1.18542 0.87050 0.92949 0.85984 1.68960 1.09840 1.25417 1.28501 1.19887 0.88299 0.85711 0.88683 1.41299 1.04275 1.11327 1.80784 1.66886 1.11864 1.27974 1.33270 1.21890 0.88740 0.96528 0.90242 1.21670 0.98732 0.95450 1.22192 1.20594 0.89971 0.88991 0.88449 0.92783 1.86762 1.32852 1.62947 1.55414 1.23007 0.98311 0.94681 1.00901 1.20892 0.92943 0.93290 1.02069 0.90842 0.76081 0.76131 0.77040 0.90524 0.86634 0.89665 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.32 11.62 21.85 0.25 -41.06 15 2 C 0.02 1.18 5.48 85.32 0.47 1.64 15 3 Si 0.99 39.14 29.57 68.60 2.03 41.16 15 4 H -0.26 -10.01 7.11 99.48 0.71 -9.31 15 5 H -0.27 -9.95 7.11 99.48 0.71 -9.25 15 6 H -0.25 -9.65 7.11 99.48 0.71 -8.94 15 7 C -0.43 -24.44 8.76 23.54 0.21 -24.24 15 8 H 0.09 5.14 6.81 -2.91 -0.02 5.12 15 9 C 0.28 16.76 6.55 40.26 0.26 17.03 15 10 N -0.60 -35.34 8.18 -191.53 -1.57 -36.91 15 11 C 0.54 28.59 8.66 261.58 2.27 30.85 15 12 N -0.83 -34.86 9.07 -59.86 -0.54 -35.41 15 13 N -0.67 -34.35 10.44 -185.82 -1.94 -36.29 15 14 C 0.17 7.96 7.37 42.61 0.31 8.28 15 15 C -0.37 -19.03 5.82 -19.13 -0.11 -19.14 15 16 C 0.18 7.01 3.99 30.44 0.12 7.14 15 17 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 18 O -0.57 -22.31 12.07 -148.98 -1.80 -24.11 15 19 C -0.13 -3.81 6.81 31.55 0.21 -3.60 15 20 C -0.05 -1.81 6.77 30.48 0.21 -1.61 15 21 H 0.28 13.86 8.29 -92.71 -0.77 13.09 15 22 H 0.41 14.49 8.94 -92.71 -0.83 13.66 15 23 H 0.41 16.28 8.94 -92.71 -0.83 15.45 15 24 H 0.38 9.72 9.12 -74.06 -0.68 9.04 15 25 H 0.08 2.22 8.11 -2.39 -0.02 2.20 15 26 H 0.12 2.31 8.14 -2.39 -0.02 2.29 15 27 H 0.08 2.62 8.14 -2.39 -0.02 2.60 15 28 H 0.10 2.89 8.14 -2.39 -0.02 2.87 15 Total: -1.00 -74.75 245.24 -0.72 -75.46 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: -1.10 Total: 40.80 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 3.95 Total: 16.35 kcal Atomic # 7 Polarization: -145.87 SS G_CDS: -3.80 Total: -149.67 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -1.80 Total: -24.11 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.16 kcal Total: -74.75 -0.72 -75.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038437.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.718 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds