Wall clock time and date at job start Mon Mar 30 2020 03:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86798 * 119.99889 * 2 1 4 4 H 1.48500 * 109.47179 * 269.99908 * 3 2 1 5 5 H 1.48505 * 109.47175 * 29.99598 * 3 2 1 6 6 H 1.48499 * 109.47409 * 149.99809 * 3 2 1 7 7 C 1.40099 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00194 * 179.97438 * 7 2 1 9 9 C 1.41532 * 120.00199 * 0.02562 * 7 2 1 10 10 N 1.34040 * 120.65963 * 359.97438 * 9 7 2 11 11 C 1.32084 * 120.38221 * 180.09546 * 10 9 7 12 12 N 1.38394 * 119.03215 * 180.02562 * 11 10 9 13 13 N 1.32541 * 121.91658 * 0.06104 * 11 10 9 14 14 C 1.32655 * 121.28277 * 359.97438 * 13 11 10 15 15 C 1.37777 * 119.14380 * 359.83729 * 14 13 11 16 16 C 1.50434 * 121.69927 * 180.35339 * 15 14 13 17 17 C 1.53065 * 109.60561 * 343.17333 * 16 15 14 18 18 O 1.43207 * 108.52665 * 48.92504 * 17 16 15 19 19 C 1.42788 * 113.28198 * 289.45656 * 18 17 16 20 20 H 0.97004 * 120.00406 * 0.02562 * 1 2 3 21 21 H 0.96994 * 120.00055 * 0.02562 * 12 11 10 22 22 H 0.97001 * 119.99608 * 179.97438 * 12 11 10 23 23 H 1.09002 * 109.44543 * 223.13932 * 16 15 14 24 24 H 1.09003 * 109.44199 * 103.20792 * 16 15 14 25 25 H 1.09007 * 109.62554 * 168.62890 * 17 16 15 26 26 H 1.08994 * 109.63038 * 289.01246 * 17 16 15 27 27 H 1.08990 * 109.35602 * 171.89917 * 19 18 17 28 28 H 1.09011 * 109.35020 * 291.61410 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4403 0.7001 7 6 2.0072 -1.2133 0.0005 8 1 3.0872 -1.2133 0.0001 9 6 1.2996 -2.4390 0.0005 10 7 -0.0407 -2.4545 0.0005 11 6 -0.6955 -3.6016 0.0024 12 7 -2.0794 -3.5850 0.0018 13 7 -0.0659 -4.7679 0.0056 14 6 1.2589 -4.8355 0.0065 15 6 1.9904 -3.6679 0.0007 16 6 3.4946 -3.6775 -0.0066 17 6 4.0015 -5.0601 0.4111 18 8 3.3037 -6.0503 -0.3526 19 6 1.9303 -6.1825 0.0152 20 1 -0.4851 0.8400 -0.0004 21 1 -2.5542 -2.7392 -0.0003 22 1 -2.5744 -4.4192 0.0028 23 1 3.8657 -2.9284 0.6930 24 1 3.8541 -3.4469 -1.0095 25 1 5.0712 -5.1327 0.2144 26 1 3.8134 -5.2134 1.4737 27 1 1.4283 -6.8411 -0.6934 28 1 1.8640 -6.6105 1.0156 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047578.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:23 Heat of formation + Delta-G solvation = -4.012038 kcal Electronic energy + Delta-G solvation = -14981.777692 eV Core-core repulsion = 12418.428603 eV Total energy + Delta-G solvation = -2563.349090 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51650 -37.45972 -34.45426 -33.25085 -31.90430 -30.94559 -28.54283 -26.80385 -24.79099 -22.90320 -21.20802 -19.75909 -17.87172 -16.70603 -15.85423 -15.39658 -15.26581 -14.59048 -14.46723 -13.65962 -13.29150 -13.00381 -12.87043 -12.30594 -11.92957 -11.43961 -11.35934 -11.18087 -10.74240 -10.45211 -10.21724 -9.77383 -9.28663 -9.08841 -9.02521 -8.44045 -7.33830 -6.81296 -6.43900 -4.77846 2.80610 2.84197 3.03524 3.06228 3.26622 3.86525 4.38123 4.59423 4.76786 5.43670 5.59594 5.76669 5.87975 5.90895 6.00600 6.07932 6.43496 6.47904 6.68921 6.76385 6.87800 7.06124 7.44605 7.58117 7.65031 7.99291 8.28201 8.47188 8.66439 8.85523 9.18955 10.15470 10.34519 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.011712 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.513353 B = 2390.218871 C = 3371.256804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.070 3.930 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.419 4.419 8 H 0.091 0.909 9 C 0.306 3.694 10 N -0.561 5.561 11 C 0.553 3.447 12 N -0.844 5.844 13 N -0.659 5.659 14 C 0.156 3.844 15 C -0.313 4.313 16 C -0.070 4.070 17 C 0.059 3.941 18 O -0.383 6.383 19 C 0.123 3.877 20 H 0.274 0.726 21 H 0.403 0.597 22 H 0.394 0.606 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.047 0.953 27 H 0.101 0.899 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.655 -2.784 1.101 4.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.328 5.328 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.453 4.453 8 H 0.109 0.891 9 C 0.175 3.825 10 N -0.290 5.290 11 C 0.193 3.807 12 N -0.394 5.394 13 N -0.392 5.392 14 C 0.017 3.983 15 C -0.324 4.324 16 C -0.109 4.109 17 C -0.017 4.017 18 O -0.301 6.301 19 C 0.045 3.955 20 H 0.085 0.915 21 H 0.232 0.768 22 H 0.222 0.778 23 H 0.089 0.911 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.119 0.881 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.656 -2.766 0.960 3.364 hybrid contribution 0.566 0.995 0.193 1.161 sum 2.222 -1.771 1.153 3.067 Atomic orbital electron populations 1.70099 1.07350 1.27923 1.27413 1.26130 0.94923 1.01259 0.93407 0.86298 0.80499 0.80554 0.79350 1.19288 1.20071 1.18368 1.19657 0.94446 0.88902 1.42336 0.89138 1.18358 0.86996 0.91322 0.85867 1.68987 1.08592 1.23855 1.27530 1.19401 0.86656 0.85943 0.88709 1.41434 1.02050 1.10177 1.85742 1.67240 1.09415 1.28813 1.33705 1.20665 0.89459 0.94322 0.93861 1.20332 0.95508 0.94785 1.21747 1.20447 0.93313 0.95937 1.01154 1.22658 0.95800 0.88658 0.94598 1.87969 1.21550 1.58419 1.62113 1.20980 0.80946 0.93296 1.00281 0.91518 0.76790 0.77826 0.91128 0.92157 0.89517 0.93511 0.88119 0.92434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.30 11.52 55.55 0.64 -17.66 15 2 C 0.07 1.73 5.50 -17.35 -0.10 1.63 15 3 Si 0.91 18.00 29.56 -169.99 -5.02 12.97 15 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 15 5 H -0.28 -5.35 7.11 56.52 0.40 -4.95 15 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 7 C -0.42 -10.91 8.71 -37.63 -0.33 -11.24 15 8 H 0.09 2.17 6.37 -52.49 -0.33 1.84 15 9 C 0.31 8.41 6.58 -84.61 -0.56 7.85 15 10 N -0.56 -15.64 8.08 -11.90 -0.10 -15.73 15 11 C 0.55 14.14 8.66 -323.29 -2.80 11.35 15 12 N -0.84 -17.27 9.07 29.70 0.27 -17.00 15 13 N -0.66 -16.43 10.35 -10.42 -0.11 -16.54 15 14 C 0.16 3.73 6.71 -82.50 -0.55 3.18 15 15 C -0.31 -7.78 5.84 -103.89 -0.61 -8.39 15 16 C -0.07 -1.43 5.18 -27.98 -0.14 -1.58 15 17 C 0.06 1.03 6.85 37.19 0.25 1.29 15 18 O -0.38 -7.34 10.79 -35.23 -0.38 -7.72 15 19 C 0.12 2.39 6.94 35.92 0.25 2.64 15 20 H 0.27 6.39 8.29 -40.82 -0.34 6.05 15 21 H 0.40 7.75 8.94 -40.82 -0.36 7.39 15 22 H 0.39 6.87 8.94 -40.82 -0.36 6.51 15 23 H 0.07 1.39 7.08 -51.93 -0.37 1.02 15 24 H 0.06 1.23 8.14 -51.93 -0.42 0.80 15 25 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 26 H 0.05 0.77 8.08 -51.93 -0.42 0.35 15 27 H 0.10 1.83 8.14 -51.93 -0.42 1.41 15 28 H 0.06 1.03 8.14 -51.92 -0.42 0.60 15 LS Contribution 241.91 15.07 3.65 3.65 Total: -1.00 -30.63 241.91 -8.31 -38.94 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -2.68 Total: 12.36 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: -4.58 Total: 6.73 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: 0.71 Total: -66.93 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.38 Total: -7.72 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.02 Total: 12.97 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.63 -8.31 -38.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047578.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.929 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds