Wall clock time and date at job start Mon Mar 30 2020 03:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86793 * 120.00205 * 2 1 4 4 H 1.48508 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47358 * 299.99609 * 3 2 1 6 6 H 1.48501 * 109.47158 * 60.00319 * 3 2 1 7 7 C 1.40070 * 119.99244 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99517 * 180.02562 * 7 2 1 9 9 C 1.41583 * 120.00309 * 0.02562 * 7 2 1 10 10 C 1.40546 * 120.58933 * 179.97438 * 9 7 2 11 11 C 1.39475 * 118.18401 * 180.02562 * 10 9 7 12 12 N 1.38593 * 120.42653 * 180.02562 * 11 10 9 13 13 C 1.46498 * 119.99960 * 0.28092 * 12 11 10 14 14 C 1.52999 * 117.49642 * 223.34548 * 13 12 11 15 15 C 1.52999 * 117.49667 * 154.72427 * 13 12 11 16 16 N 1.32971 * 119.14176 * 0.27631 * 11 10 9 17 17 C 1.32494 * 121.11765 * 359.44624 * 16 11 10 18 18 O 1.35452 * 118.99389 * 180.27084 * 17 16 11 19 19 N 1.31916 * 122.01206 * 0.56559 * 17 16 11 20 20 H 0.97004 * 119.99577 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.91108 * 0.02562 * 10 9 7 22 22 H 0.97001 * 119.99595 * 179.97438 * 12 11 10 23 23 H 1.09004 * 115.55248 * 9.05187 * 13 12 11 24 24 H 1.09001 * 117.49941 * 359.97438 * 14 13 12 25 25 H 1.09001 * 117.49839 * 145.01989 * 14 13 12 26 26 H 1.09009 * 117.49682 * 214.97488 * 15 13 12 27 27 H 1.08994 * 117.50187 * 359.97438 * 15 13 12 28 28 H 0.96702 * 113.99378 * 270.29159 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6176 0.0000 4 1 3.7011 1.3462 0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8824 2.3963 1.2125 7 6 2.0072 -1.2131 0.0005 8 1 3.0872 -1.2132 0.0010 9 6 1.2992 -2.4392 0.0005 10 6 1.9892 -3.6636 0.0005 11 6 1.2417 -4.8411 0.0000 12 7 1.8744 -6.0742 0.0005 13 6 3.3376 -6.1467 0.0078 14 6 3.9991 -7.1653 -0.9226 15 6 3.9794 -7.4086 0.5878 16 7 -0.0858 -4.7653 -0.0061 17 6 -0.7048 -3.5939 -0.0007 18 8 -2.0591 -3.5669 -0.0017 19 7 -0.0425 -2.4530 -0.0001 20 1 -0.4850 0.8401 0.0004 21 1 3.0689 -3.6920 0.0010 22 1 1.3484 -6.8892 0.0005 23 1 3.8544 -5.2003 0.1673 24 1 3.3456 -7.7818 -1.5398 25 1 4.9512 -6.8892 -1.3756 26 1 4.9188 -7.2925 1.1285 27 1 3.3131 -8.1847 0.9643 28 1 -2.4516 -3.5590 -0.8854 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261087038.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:09 Heat of formation + Delta-G solvation = 39.077052 kcal Electronic energy + Delta-G solvation = -14401.578253 eV Core-core repulsion = 11840.097646 eV Total energy + Delta-G solvation = -2561.480606 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19548 -37.54950 -35.95342 -34.20913 -32.60561 -30.69174 -28.63343 -26.14879 -22.87724 -22.25156 -21.66545 -20.66970 -18.23073 -17.15799 -16.68278 -15.82757 -15.04094 -14.53105 -14.38161 -13.71805 -13.60212 -12.91054 -12.72941 -12.20467 -11.56423 -11.45158 -11.21686 -11.14378 -11.05327 -10.51809 -10.31223 -10.23158 -9.86872 -9.13352 -9.02705 -8.20283 -7.44319 -6.95903 -6.45923 -4.78254 2.60891 2.92083 3.05135 3.09581 3.25360 3.66271 3.88147 4.09997 4.61996 4.89973 5.00695 5.14326 5.17387 5.70860 5.80125 5.86194 6.01124 6.18156 6.33945 6.54707 6.82117 6.95751 7.12705 7.33578 7.78750 8.03907 8.30626 8.33413 8.65999 8.87898 9.16724 10.10070 10.23089 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027833 B = 0.008646 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.768250 B = 3237.833811 C = 4162.914564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.068 3.932 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.419 4.419 8 H 0.090 0.910 9 C 0.303 3.697 10 C -0.392 4.392 11 C 0.442 3.558 12 N -0.704 5.704 13 C 0.111 3.889 14 C -0.205 4.205 15 C -0.200 4.200 16 N -0.674 5.674 17 C 0.506 3.494 18 O -0.477 6.477 19 N -0.535 5.535 20 H 0.276 0.724 21 H 0.109 0.891 22 H 0.393 0.607 23 H 0.134 0.866 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.513 -5.561 -1.666 8.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.324 5.324 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.452 4.452 8 H 0.108 0.892 9 C 0.176 3.824 10 C -0.423 4.423 11 C 0.208 3.792 12 N -0.337 5.337 13 C 0.003 3.997 14 C -0.244 4.244 15 C -0.239 4.239 16 N -0.417 5.417 17 C 0.198 3.802 18 O -0.277 6.277 19 N -0.268 5.268 20 H 0.087 0.913 21 H 0.127 0.873 22 H 0.228 0.772 23 H 0.151 0.849 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 4.479 -5.269 -1.055 6.996 hybrid contribution 0.879 0.179 -0.489 1.022 sum 5.359 -5.090 -1.544 7.550 Atomic orbital electron populations 1.70132 1.07279 1.28113 1.26862 1.26164 0.94962 1.01370 0.93451 0.86214 0.80817 0.80812 0.78688 1.18233 1.19697 1.19687 1.19676 0.94393 0.88869 1.42264 0.89223 1.18299 0.86515 0.91822 0.85729 1.21679 0.99179 0.92482 1.28919 1.17678 0.87475 0.84975 0.89034 1.43512 1.03055 1.05192 1.81951 1.21411 0.81344 0.95008 1.01981 1.23448 1.03057 1.05001 0.92920 1.23374 1.03047 1.01247 0.96271 1.66805 1.08974 1.31163 1.34791 1.20041 0.84490 0.84063 0.91630 1.84600 1.14656 1.95752 1.32705 1.68940 1.08973 1.25608 1.23313 0.91310 0.87280 0.77205 0.84897 0.88959 0.88470 0.88353 0.88951 0.75560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.62 11.52 55.55 0.64 -17.98 15 2 C 0.07 1.70 5.50 -17.35 -0.10 1.60 15 3 Si 0.91 18.05 29.56 -169.99 -5.02 13.02 15 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 7 C -0.42 -11.01 9.19 -37.62 -0.35 -11.36 15 8 H 0.09 2.17 7.85 -52.48 -0.41 1.76 15 9 C 0.30 8.38 6.58 -84.70 -0.56 7.83 15 10 C -0.39 -9.71 9.18 -38.25 -0.35 -10.07 15 11 C 0.44 10.46 7.71 -154.80 -1.19 9.27 15 12 N -0.70 -13.17 5.72 -53.81 -0.31 -13.48 15 13 C 0.11 1.70 6.32 -67.93 -0.43 1.27 15 14 C -0.20 -2.51 10.46 -26.73 -0.28 -2.79 15 15 C -0.20 -2.40 10.45 -26.73 -0.28 -2.68 15 16 N -0.67 -17.13 10.48 -14.03 -0.15 -17.28 15 17 C 0.51 13.47 8.70 -91.45 -0.80 12.68 15 18 O -0.48 -11.13 13.64 -18.05 -0.25 -11.38 15 19 N -0.54 -15.27 8.06 -12.73 -0.10 -15.37 15 20 H 0.28 6.56 8.29 -40.82 -0.34 6.22 15 21 H 0.11 2.43 5.99 -52.49 -0.31 2.12 15 22 H 0.39 6.81 8.95 -40.82 -0.37 6.44 15 23 H 0.13 2.10 5.93 -51.93 -0.31 1.79 15 24 H 0.09 1.12 8.14 -51.93 -0.42 0.70 15 25 H 0.10 1.05 8.14 -51.93 -0.42 0.63 15 26 H 0.10 1.02 8.14 -51.92 -0.42 0.60 15 27 H 0.09 1.07 8.14 -51.93 -0.42 0.64 15 28 H 0.39 6.95 9.06 45.56 0.41 7.36 15 LS Contribution 253.01 15.07 3.81 3.81 Total: -1.00 -31.54 253.01 -7.51 -39.06 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -1.81 Total: 13.85 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -4.33 Total: 5.74 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.08 Total: -64.11 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.25 Total: -11.38 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.02 Total: 13.02 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.54 -7.51 -39.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087038.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.132 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds