Wall clock time and date at job start Mon Mar 30 2020 03:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30699 * 1 3 3 Si 1.86793 * 120.00205 * 2 1 4 4 H 1.48508 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47358 * 299.99609 * 3 2 1 6 6 H 1.48501 * 109.47158 * 60.00319 * 3 2 1 7 7 C 1.40070 * 119.99244 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99517 * 180.02562 * 7 2 1 9 9 C 1.41583 * 120.00309 * 0.02562 * 7 2 1 10 10 C 1.40546 * 120.58933 * 179.97438 * 9 7 2 11 11 C 1.39475 * 118.18401 * 180.02562 * 10 9 7 12 12 N 1.38593 * 120.42653 * 180.02562 * 11 10 9 13 13 C 1.46498 * 119.99960 * 0.28092 * 12 11 10 14 14 C 1.52999 * 117.49642 * 223.34548 * 13 12 11 15 15 C 1.52999 * 117.49667 * 154.72427 * 13 12 11 16 16 N 1.32971 * 119.14176 * 0.27631 * 11 10 9 17 17 C 1.32494 * 121.11765 * 359.44624 * 16 11 10 18 18 O 1.35452 * 118.99389 * 180.27084 * 17 16 11 19 19 N 1.31916 * 122.01206 * 0.56559 * 17 16 11 20 20 H 0.97004 * 119.99577 * 359.97438 * 1 2 3 21 21 H 1.08002 * 120.91108 * 0.02562 * 10 9 7 22 22 H 0.97001 * 119.99595 * 179.97438 * 12 11 10 23 23 H 1.09004 * 115.55248 * 9.05187 * 13 12 11 24 24 H 1.09001 * 117.49941 * 359.97438 * 14 13 12 25 25 H 1.09001 * 117.49839 * 145.01989 * 14 13 12 26 26 H 1.09009 * 117.49682 * 214.97488 * 15 13 12 27 27 H 1.08994 * 117.50187 * 359.97438 * 15 13 12 28 28 H 0.96702 * 113.99378 * 270.29159 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6176 0.0000 4 1 3.7011 1.3462 0.0006 5 1 1.8824 2.3964 -1.2125 6 1 1.8824 2.3963 1.2125 7 6 2.0072 -1.2131 0.0005 8 1 3.0872 -1.2132 0.0010 9 6 1.2992 -2.4392 0.0005 10 6 1.9892 -3.6636 0.0005 11 6 1.2417 -4.8411 0.0000 12 7 1.8744 -6.0742 0.0005 13 6 3.3376 -6.1467 0.0078 14 6 3.9991 -7.1653 -0.9226 15 6 3.9794 -7.4086 0.5878 16 7 -0.0858 -4.7653 -0.0061 17 6 -0.7048 -3.5939 -0.0007 18 8 -2.0591 -3.5669 -0.0017 19 7 -0.0425 -2.4530 -0.0001 20 1 -0.4850 0.8401 0.0004 21 1 3.0689 -3.6920 0.0010 22 1 1.3484 -6.8892 0.0005 23 1 3.8544 -5.2003 0.1673 24 1 3.3456 -7.7818 -1.5398 25 1 4.9512 -6.8892 -1.3756 26 1 4.9188 -7.2925 1.1285 27 1 3.3131 -8.1847 0.9643 28 1 -2.4516 -3.5590 -0.8854 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087038.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:09 Heat of formation + Delta-G solvation = 13.666448 kcal Electronic energy + Delta-G solvation = -14402.680139 eV Core-core repulsion = 11840.097646 eV Total energy + Delta-G solvation = -2562.582493 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.05672 -38.91455 -37.72180 -36.00141 -34.32025 -32.54150 -30.48316 -28.05745 -24.55942 -23.55920 -23.19374 -22.16332 -20.00024 -19.08617 -18.40813 -17.23682 -16.82032 -16.26217 -15.95199 -15.48734 -15.04777 -14.60975 -14.44090 -13.49007 -13.18603 -12.97084 -12.93045 -12.66820 -12.38705 -12.36377 -11.86730 -11.55508 -11.42313 -10.98085 -10.76108 -10.08559 -9.40329 -8.62511 -8.34406 -6.76174 0.69382 1.14936 1.43415 1.58842 1.60474 2.14098 2.23054 2.75453 3.06402 3.07865 3.82432 3.88539 4.08281 4.17359 4.38358 4.58156 4.79489 4.91461 4.99549 5.06763 5.14586 5.26301 5.26486 5.54760 6.03286 6.25956 6.43529 6.67083 6.78257 7.00582 7.31997 8.15565 8.37689 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027833 B = 0.008646 C = 0.006724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.768250 B = 3237.833811 C = 4162.914564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.022 3.978 3 Si 0.996 3.004 4 H -0.248 1.248 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.445 4.445 8 H 0.102 0.898 9 C 0.268 3.732 10 C -0.408 4.408 11 C 0.440 3.560 12 N -0.692 5.692 13 C 0.067 3.933 14 C -0.186 4.186 15 C -0.175 4.175 16 N -0.683 5.683 17 C 0.494 3.506 18 O -0.480 6.480 19 N -0.570 5.570 20 H 0.283 0.717 21 H 0.127 0.873 22 H 0.400 0.600 23 H 0.123 0.877 24 H 0.095 0.905 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.315 -5.976 -1.792 9.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.202 4.202 3 Si 0.815 3.185 4 H -0.171 1.171 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.477 4.477 8 H 0.120 0.880 9 C 0.142 3.858 10 C -0.438 4.438 11 C 0.204 3.796 12 N -0.325 5.325 13 C -0.040 4.040 14 C -0.225 4.225 15 C -0.214 4.214 16 N -0.428 5.428 17 C 0.185 3.815 18 O -0.284 6.284 19 N -0.304 5.304 20 H 0.094 0.906 21 H 0.144 0.856 22 H 0.236 0.764 23 H 0.141 0.859 24 H 0.114 0.886 25 H 0.134 0.866 26 H 0.138 0.862 27 H 0.118 0.882 28 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 6.314 -5.753 -1.197 8.625 hybrid contribution 0.311 0.165 -0.460 0.579 sum 6.625 -5.587 -1.657 8.823 Atomic orbital electron populations 1.70232 1.09254 1.29685 1.27477 1.27193 0.95750 1.05075 0.92155 0.84956 0.79549 0.75144 0.78837 1.17053 1.18915 1.19202 1.20124 0.95202 0.89524 1.42866 0.87972 1.18840 0.86843 0.93520 0.86561 1.21802 1.00081 0.92177 1.29747 1.17967 0.87063 0.86638 0.87886 1.43564 1.04630 1.03605 1.80686 1.21670 0.79349 0.96407 1.06554 1.23512 1.03142 1.02480 0.93342 1.23467 1.03198 0.98385 0.96303 1.66947 1.09850 1.30475 1.35529 1.20319 0.85384 0.84330 0.91475 1.84530 1.13449 1.95729 1.34703 1.68912 1.09793 1.26679 1.25051 0.90596 0.85563 0.76392 0.85901 0.88647 0.86597 0.86237 0.88221 0.73105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.22 11.52 21.84 0.25 -39.97 15 2 C 0.02 1.10 5.50 85.31 0.47 1.57 15 3 Si 1.00 36.67 29.56 68.60 2.03 38.70 15 4 H -0.25 -8.56 7.11 99.48 0.71 -7.85 15 5 H -0.26 -9.35 7.11 99.48 0.71 -8.64 15 6 H -0.27 -9.57 7.11 99.48 0.71 -8.86 15 7 C -0.44 -23.71 9.19 23.54 0.22 -23.49 15 8 H 0.10 4.95 7.85 -2.91 -0.02 4.93 15 9 C 0.27 15.23 6.58 40.17 0.26 15.50 15 10 C -0.41 -20.52 9.18 23.13 0.21 -20.31 15 11 C 0.44 20.93 7.71 133.11 1.03 21.96 15 12 N -0.69 -25.26 5.72 -324.17 -1.85 -27.12 15 13 C 0.07 1.92 6.32 44.99 0.28 2.21 15 14 C -0.19 -3.98 10.46 30.59 0.32 -3.66 15 15 C -0.18 -3.61 10.45 30.59 0.32 -3.29 15 16 N -0.68 -35.14 10.48 -311.16 -3.26 -38.40 15 17 C 0.49 26.89 8.70 180.64 1.57 28.46 15 18 O -0.48 -22.82 13.64 -87.50 -1.19 -24.01 15 19 N -0.57 -33.49 8.06 -307.36 -2.48 -35.97 15 20 H 0.28 13.68 8.29 -92.71 -0.77 12.92 15 21 H 0.13 5.68 5.99 -2.91 -0.02 5.66 15 22 H 0.40 13.35 8.95 -92.71 -0.83 12.52 15 23 H 0.12 3.76 5.93 -2.38 -0.01 3.75 15 24 H 0.10 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.12 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.12 2.00 8.14 -2.38 -0.02 1.98 15 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 28 H 0.41 14.84 9.06 -74.06 -0.67 14.17 15 Total: -1.00 -69.15 253.01 -2.10 -71.25 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.28 Total: 36.57 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 4.68 Total: 18.94 kcal Atomic # 7 Polarization: -134.12 SS G_CDS: -7.34 Total: -141.46 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -1.19 Total: -24.01 kcal Atomic # 14 Polarization: 36.67 SS G_CDS: 2.03 Total: 38.70 kcal Total: -69.15 -2.10 -71.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087038.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.921 kcal (2) G-P(sol) polarization free energy of solvation -69.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds