Wall clock time and date at job start Mon Mar 30 2020 03:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86797 * 120.00129 * 2 1 4 4 H 1.48502 * 109.46775 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47175 * 299.99831 * 3 2 1 6 6 H 1.48492 * 109.47190 * 60.00064 * 3 2 1 7 7 C 1.40106 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.41545 * 119.99973 * 359.97438 * 7 2 1 10 10 N 1.34021 * 120.63746 * 359.97438 * 9 7 2 11 11 C 1.31903 * 120.37395 * 180.08796 * 10 9 7 12 12 O 1.35447 * 119.03144 * 180.02562 * 11 10 9 13 13 N 1.32478 * 121.93546 * 0.05472 * 11 10 9 14 14 C 1.32769 * 121.34126 * 359.97438 * 13 11 10 15 15 C 1.37727 * 119.06292 * 359.86366 * 14 13 11 16 16 C 1.50400 * 121.97233 * 180.30443 * 15 14 13 17 17 C 1.52996 * 109.84355 * 343.24183 * 16 15 14 18 18 N 1.47151 * 108.57386 * 50.05216 * 17 16 15 19 19 C 1.46694 * 110.39505 * 288.91667 * 18 17 16 20 20 H 0.97003 * 119.99695 * 0.02562 * 1 2 3 21 21 H 0.96699 * 114.00132 * 90.00156 * 12 11 10 22 22 H 1.08998 * 109.40763 * 223.13107 * 16 15 14 23 23 H 1.08997 * 109.34794 * 103.31881 * 16 15 14 24 24 H 1.08998 * 109.62078 * 169.77955 * 17 16 15 25 25 H 1.09000 * 109.61802 * 290.32786 * 17 16 15 26 26 H 1.00898 * 110.99955 * 52.44103 * 18 17 16 27 27 H 1.09000 * 109.31925 * 292.24965 * 19 18 17 28 28 H 1.08995 * 109.31904 * 172.80546 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3462 0.0006 5 1 1.8821 2.3964 -1.2125 6 1 1.8821 2.3964 1.2124 7 6 2.0072 -1.2134 0.0005 8 1 3.0872 -1.2134 0.0010 9 6 1.2995 -2.4392 0.0016 10 7 -0.0407 -2.4540 0.0027 11 6 -0.6950 -3.5993 0.0054 12 8 -2.0493 -3.5826 0.0059 13 7 -0.0664 -4.7655 0.0084 14 6 1.2595 -4.8353 0.0081 15 6 1.9909 -3.6683 0.0019 16 6 3.4949 -3.6712 -0.0055 17 6 4.0137 -5.0492 0.4099 18 7 3.3245 -6.0713 -0.3936 19 6 1.9217 -6.1864 0.0199 20 1 -0.4850 0.8401 -0.0004 21 1 -2.4430 -3.5797 -0.8773 22 1 3.8619 -2.9200 0.6938 23 1 3.8515 -3.4371 -1.0086 24 1 5.0874 -5.1054 0.2307 25 1 3.8074 -5.2144 1.4674 26 1 3.3953 -5.8652 -1.3787 27 1 1.8755 -6.6019 1.0266 28 1 1.3970 -6.8513 -0.6661 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261088887.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:34 Heat of formation + Delta-G solvation = -0.009879 kcal Electronic energy + Delta-G solvation = -14982.005250 eV Core-core repulsion = 12418.829707 eV Total energy + Delta-G solvation = -2563.175543 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.67562 -37.21768 -35.57013 -34.06841 -32.01680 -30.52338 -28.85474 -26.63718 -23.98603 -22.88579 -21.31036 -20.11728 -18.03955 -17.15381 -16.21050 -15.50755 -15.09413 -14.60515 -14.04487 -13.54961 -13.07969 -13.04578 -12.66295 -12.23629 -11.62891 -11.47581 -11.27304 -11.11638 -10.94017 -10.78178 -10.59622 -10.34125 -9.78475 -9.18552 -8.64866 -8.36559 -7.74618 -7.42020 -6.56836 -4.92936 2.40655 2.67984 2.96533 3.00956 3.07466 3.76499 4.38507 4.66265 4.74921 5.43262 5.48498 5.57425 5.79718 5.85756 6.01911 6.13007 6.34233 6.42798 6.49412 6.60710 6.77997 6.93965 7.25405 7.29211 7.47740 7.66668 7.86990 8.16683 8.48529 8.68248 8.98323 9.93972 10.07405 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.027117 B = 0.011793 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.302434 B = 2373.700799 C = 3356.212023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.065 3.935 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.411 4.411 8 H 0.095 0.905 9 C 0.285 3.715 10 N -0.522 5.522 11 C 0.477 3.523 12 O -0.477 6.477 13 N -0.629 5.629 14 C 0.145 3.855 15 C -0.293 4.293 16 C -0.077 4.077 17 C 0.053 3.947 18 N -0.677 5.677 19 C 0.113 3.887 20 H 0.278 0.722 21 H 0.389 0.611 22 H 0.070 0.930 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.339 0.661 27 H 0.082 0.918 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.043 -2.447 -1.861 5.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.163 4.163 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.445 4.445 8 H 0.113 0.887 9 C 0.156 3.844 10 N -0.253 5.253 11 C 0.169 3.831 12 O -0.278 6.278 13 N -0.363 5.363 14 C 0.006 3.994 15 C -0.302 4.302 16 C -0.117 4.117 17 C -0.076 4.076 18 N -0.305 5.305 19 C -0.017 4.017 20 H 0.089 0.911 21 H 0.244 0.756 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.155 0.845 27 H 0.100 0.900 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.052 -2.849 -0.844 5.025 hybrid contribution 0.441 1.725 -0.824 1.962 sum 4.492 -1.123 -1.668 4.922 Atomic orbital electron populations 1.70111 1.07403 1.28447 1.25995 1.26212 0.95005 1.01589 0.93511 0.86179 0.80822 0.80562 0.78859 1.18085 1.19557 1.19541 1.19788 0.94663 0.88818 1.41208 0.88737 1.18486 0.86709 0.91736 0.87470 1.68959 1.08894 1.25997 1.21413 1.20410 0.84694 0.85119 0.92895 1.84603 1.14639 1.95867 1.32690 1.67475 1.09919 1.30233 1.28696 1.21146 0.88990 0.95185 0.94122 1.20595 0.95956 0.94791 1.18849 1.20593 0.92598 0.97587 1.00947 1.22114 0.97704 0.89699 0.98118 1.61183 1.12398 1.48136 1.08749 1.20618 0.86770 0.92343 1.01992 0.91083 0.75643 0.91152 0.92496 0.90942 0.91243 0.84467 0.89982 0.89812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.19 11.52 55.55 0.64 -17.55 15 2 C 0.06 1.58 5.50 -17.34 -0.10 1.49 15 3 Si 0.91 17.60 29.56 -169.99 -5.02 12.57 15 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 15 6 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 7 C -0.41 -10.42 8.70 -37.62 -0.33 -10.75 15 8 H 0.09 2.19 6.34 -52.49 -0.33 1.85 15 9 C 0.28 7.63 6.58 -84.59 -0.56 7.07 15 10 N -0.52 -14.72 8.08 -12.66 -0.10 -14.83 15 11 C 0.48 12.60 8.70 -91.47 -0.80 11.80 15 12 O -0.48 -11.17 13.64 -18.03 -0.25 -11.42 15 13 N -0.63 -15.79 10.35 -11.19 -0.12 -15.90 15 14 C 0.15 3.33 6.69 -82.48 -0.55 2.77 15 15 C -0.29 -6.89 5.83 -103.90 -0.61 -7.49 15 16 C -0.08 -1.46 5.00 -28.03 -0.14 -1.60 15 17 C 0.05 0.84 6.62 -3.69 -0.02 0.82 15 18 N -0.68 -10.82 6.95 -115.15 -0.80 -11.62 15 19 C 0.11 2.06 6.61 -5.20 -0.03 2.03 15 20 H 0.28 6.49 8.29 -40.82 -0.34 6.16 15 21 H 0.39 6.96 9.06 45.56 0.41 7.37 15 22 H 0.07 1.33 7.06 -51.93 -0.37 0.96 15 23 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.07 1.13 8.05 -51.93 -0.42 0.71 15 26 H 0.34 5.14 8.75 -39.29 -0.34 4.80 15 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 15 28 H 0.08 1.44 8.14 -51.93 -0.42 1.01 15 LS Contribution 241.77 15.07 3.64 3.64 Total: -1.00 -30.81 241.77 -7.01 -37.82 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -1.87 Total: 11.14 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -3.13 Total: 6.14 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.38 Total: -59.90 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.25 Total: -11.42 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.02 Total: 12.57 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.81 -7.01 -37.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261088887.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.814 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds