Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00153 * 2 1 4 4 H 1.48496 * 109.47249 * 273.29758 * 3 2 1 5 5 H 1.48492 * 109.47230 * 33.30187 * 3 2 1 6 6 H 1.48508 * 109.46904 * 153.30113 * 3 2 1 7 7 C 1.37877 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00463 * 353.55380 * 7 2 1 9 9 C 1.50700 * 119.99951 * 173.55130 * 7 2 1 10 10 N 1.46496 * 115.56277 * 89.71368 * 9 7 2 11 11 C 1.39828 * 119.99941 * 80.71802 * 10 9 7 12 12 C 1.38873 * 120.04867 * 353.88129 * 11 10 9 13 13 C 1.38119 * 119.95030 * 179.77227 * 12 11 10 14 14 C 1.38467 * 120.04867 * 0.48396 * 13 12 11 15 15 F 1.35099 * 119.94929 * 179.74528 * 14 13 12 16 16 C 1.38463 * 120.09754 * 359.77263 * 14 13 12 17 17 C 1.38122 * 120.04968 * 359.97438 * 16 14 13 18 18 C 1.53004 * 117.49809 * 235.40335 * 9 7 2 19 19 C 1.53002 * 60.00156 * 107.49069 * 18 9 7 20 20 H 0.97002 * 120.00426 * 359.97438 * 1 2 3 21 21 H 0.96992 * 120.00253 * 260.71376 * 10 9 7 22 22 H 1.07999 * 120.02638 * 359.97438 * 12 11 10 23 23 H 1.08004 * 119.97980 * 180.23427 * 13 12 11 24 24 H 1.07996 * 119.97684 * 179.97438 * 16 14 13 25 25 H 1.08001 * 120.02292 * 180.02562 * 17 16 14 26 26 H 1.09001 * 117.50053 * 0.02562 * 18 9 7 27 27 H 1.09009 * 117.50041 * 214.97964 * 18 9 7 28 28 H 1.08995 * 117.50049 * 107.49049 * 19 18 9 29 29 H 1.08996 * 117.49601 * 252.49086 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4269 2.0867 -1.3977 5 1 1.4833 2.6314 0.7687 6 1 3.5799 1.4209 0.6291 7 6 2.0044 -1.1941 0.0005 8 1 1.4696 -2.1264 0.1060 9 6 3.5043 -1.1983 -0.1460 10 7 4.2619 -1.1187 1.1052 11 6 4.4602 -2.2678 1.8768 12 6 3.8345 -3.4571 1.5265 13 6 4.0355 -4.5922 2.2874 14 6 4.8521 -4.5424 3.4046 15 9 5.0432 -5.6526 4.1503 16 6 5.4727 -3.3564 3.7587 17 6 5.2787 -2.2201 2.9977 18 6 4.1008 -2.0329 -1.2812 19 6 4.0959 -0.5058 -1.3754 20 1 -0.4851 0.8400 0.0004 21 1 4.6261 -0.2689 1.3985 22 1 3.1939 -3.4953 0.6579 23 1 3.5522 -5.5183 2.0133 24 1 6.1089 -3.3197 4.6306 25 1 5.7633 -1.2954 3.2741 26 1 3.4084 -2.5785 -1.9223 27 1 5.0570 -2.5228 -1.0970 28 1 5.0488 0.0091 -1.2532 29 1 3.4006 -0.0472 -2.0784 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110764.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = 8.567132 kcal Electronic energy + Delta-G solvation = -14557.798908 eV Core-core repulsion = 11975.075331 eV Total energy + Delta-G solvation = -2582.723577 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.23773 -38.89223 -36.83041 -32.69935 -32.16655 -30.52699 -27.54877 -25.83886 -22.83224 -21.77329 -21.46077 -19.49662 -17.29073 -16.78705 -16.48428 -15.53193 -15.04101 -14.95948 -14.32351 -13.81294 -13.37628 -13.04189 -12.71147 -12.42533 -12.32102 -12.15398 -11.29018 -11.14828 -10.91300 -10.62763 -10.40496 -10.08552 -9.87499 -8.91976 -8.80997 -8.75960 -8.57285 -6.61199 -6.29630 -4.36414 1.80272 1.98268 3.14787 3.23347 3.26188 4.10067 4.24440 4.28983 4.69017 4.94385 5.10915 5.28415 5.34743 5.79223 5.82173 5.86091 5.93340 6.07090 6.29928 6.38174 6.46045 6.60116 6.70263 6.88948 6.91179 6.94827 7.36485 7.50625 8.11515 8.33259 8.51391 8.74557 9.32572 10.81121 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038862 B = 0.008223 C = 0.008121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.333818 B = 3404.472208 C = 3446.885431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.084 3.916 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.493 4.493 8 H 0.083 0.917 9 C 0.214 3.786 10 N -0.709 5.709 11 C 0.237 3.763 12 C -0.154 4.154 13 C -0.107 4.107 14 C 0.006 3.994 15 F -0.158 7.158 16 C -0.106 4.106 17 C -0.194 4.194 18 C -0.180 4.180 19 C -0.198 4.198 20 H 0.268 0.732 21 H 0.386 0.614 22 H 0.141 0.859 23 H 0.125 0.875 24 H 0.122 0.878 25 H 0.120 0.880 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.478 -2.823 2.323 10.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.121 4.121 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.531 4.531 8 H 0.101 0.899 9 C 0.129 3.871 10 N -0.334 5.334 11 C 0.129 3.871 12 C -0.176 4.176 13 C -0.126 4.126 14 C -0.015 4.015 15 F -0.137 7.137 16 C -0.126 4.126 17 C -0.218 4.218 18 C -0.218 4.218 19 C -0.236 4.236 20 H 0.078 0.922 21 H 0.221 0.779 22 H 0.159 0.841 23 H 0.143 0.857 24 H 0.140 0.860 25 H 0.138 0.862 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.189 -2.736 2.139 9.823 hybrid contribution 0.533 1.182 0.319 1.335 sum 9.722 -1.554 2.458 10.148 Atomic orbital electron populations 1.69892 1.06439 1.27518 1.48173 1.25026 0.94611 0.99270 0.93220 0.86709 0.80098 0.83144 0.78197 1.20361 1.21853 1.19071 1.20442 0.86225 0.95002 1.51458 0.89915 1.18749 0.90517 1.00111 0.77709 1.45388 1.58115 1.06724 1.23137 1.17933 0.91244 0.88059 0.89830 1.20757 1.03048 0.90928 1.02913 1.20869 0.98232 0.99284 0.94238 1.17347 1.05868 0.83344 0.94966 1.91390 1.94688 1.51576 1.76089 1.20645 1.00295 0.91573 1.00074 1.20359 1.04883 0.98550 0.97967 1.23156 1.01445 0.92918 1.04322 1.23214 1.01439 0.95566 1.03348 0.92223 0.77924 0.84108 0.85720 0.85986 0.86238 0.88719 0.90443 0.90604 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.96 55.43 0.77 -24.70 15 2 C 0.08 2.25 5.46 -17.82 -0.10 2.15 15 3 Si 0.89 20.36 25.41 -169.99 -4.32 16.04 15 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 6 H -0.27 -5.63 5.95 56.52 0.34 -5.30 15 7 C -0.49 -12.76 9.13 -34.44 -0.31 -13.08 15 8 H 0.08 2.36 7.76 -52.49 -0.41 1.95 15 9 C 0.21 4.58 0.31 -132.97 -0.04 4.54 15 10 N -0.71 -14.02 5.50 -47.04 -0.26 -14.27 15 11 C 0.24 4.47 6.58 -83.74 -0.55 3.91 15 12 C -0.15 -2.91 8.92 -39.39 -0.35 -3.26 15 13 C -0.11 -1.83 10.02 -39.54 -0.40 -2.23 15 14 C 0.01 0.10 7.30 -39.41 -0.29 -0.18 15 15 F -0.16 -2.66 17.26 2.25 0.04 -2.62 15 16 C -0.11 -1.68 10.02 -39.54 -0.40 -2.08 15 17 C -0.19 -3.20 9.90 -39.39 -0.39 -3.59 15 18 C -0.18 -3.40 8.94 -26.73 -0.24 -3.64 15 19 C -0.20 -3.86 7.89 -26.73 -0.21 -4.07 15 20 H 0.27 7.25 8.31 -40.82 -0.34 6.91 15 21 H 0.39 7.16 7.87 -40.82 -0.32 6.83 15 22 H 0.14 2.83 5.76 -52.49 -0.30 2.53 15 23 H 0.12 1.89 8.06 -52.48 -0.42 1.46 15 24 H 0.12 1.62 8.06 -52.49 -0.42 1.19 15 25 H 0.12 1.71 8.06 -52.49 -0.42 1.28 15 26 H 0.09 1.77 8.14 -51.93 -0.42 1.35 15 27 H 0.08 1.36 8.14 -51.92 -0.42 0.93 15 28 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 29 H 0.10 1.95 7.29 -51.93 -0.38 1.57 15 LS Contribution 252.35 15.07 3.80 3.80 Total: -1.00 -27.50 252.35 -6.38 -33.89 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -3.15 Total: 9.38 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -3.28 Total: -21.52 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.51 Total: -38.97 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.32 Total: 16.04 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.50 -6.38 -33.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110764.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.453 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds