Wall clock time and date at job start Mon Mar 30 2020 03:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86798 * 120.00153 * 2 1 4 4 H 1.48496 * 109.47249 * 273.29758 * 3 2 1 5 5 H 1.48492 * 109.47230 * 33.30187 * 3 2 1 6 6 H 1.48508 * 109.46904 * 153.30113 * 3 2 1 7 7 C 1.37877 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00463 * 353.55380 * 7 2 1 9 9 C 1.50700 * 119.99951 * 173.55130 * 7 2 1 10 10 N 1.46496 * 115.56277 * 89.71368 * 9 7 2 11 11 C 1.39828 * 119.99941 * 80.71802 * 10 9 7 12 12 C 1.38873 * 120.04867 * 353.88129 * 11 10 9 13 13 C 1.38119 * 119.95030 * 179.77227 * 12 11 10 14 14 C 1.38467 * 120.04867 * 0.48396 * 13 12 11 15 15 F 1.35099 * 119.94929 * 179.74528 * 14 13 12 16 16 C 1.38463 * 120.09754 * 359.77263 * 14 13 12 17 17 C 1.38122 * 120.04968 * 359.97438 * 16 14 13 18 18 C 1.53004 * 117.49809 * 235.40335 * 9 7 2 19 19 C 1.53002 * 60.00156 * 107.49069 * 18 9 7 20 20 H 0.97002 * 120.00426 * 359.97438 * 1 2 3 21 21 H 0.96992 * 120.00253 * 260.71376 * 10 9 7 22 22 H 1.07999 * 120.02638 * 359.97438 * 12 11 10 23 23 H 1.08004 * 119.97980 * 180.23427 * 13 12 11 24 24 H 1.07996 * 119.97684 * 179.97438 * 16 14 13 25 25 H 1.08001 * 120.02292 * 180.02562 * 17 16 14 26 26 H 1.09001 * 117.50053 * 0.02562 * 18 9 7 27 27 H 1.09009 * 117.50041 * 214.97964 * 18 9 7 28 28 H 1.08995 * 117.50049 * 107.49049 * 19 18 9 29 29 H 1.08996 * 117.49601 * 252.49086 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4269 2.0867 -1.3977 5 1 1.4833 2.6314 0.7687 6 1 3.5799 1.4209 0.6291 7 6 2.0044 -1.1941 0.0005 8 1 1.4696 -2.1264 0.1060 9 6 3.5043 -1.1983 -0.1460 10 7 4.2619 -1.1187 1.1052 11 6 4.4602 -2.2678 1.8768 12 6 3.8345 -3.4571 1.5265 13 6 4.0355 -4.5922 2.2874 14 6 4.8521 -4.5424 3.4046 15 9 5.0432 -5.6526 4.1503 16 6 5.4727 -3.3564 3.7587 17 6 5.2787 -2.2201 2.9977 18 6 4.1008 -2.0329 -1.2812 19 6 4.0959 -0.5058 -1.3754 20 1 -0.4851 0.8400 0.0004 21 1 4.6261 -0.2689 1.3985 22 1 3.1939 -3.4953 0.6579 23 1 3.5522 -5.5183 2.0133 24 1 6.1089 -3.3197 4.6306 25 1 5.7633 -1.2954 3.2741 26 1 3.4084 -2.5785 -1.9223 27 1 5.0570 -2.5228 -1.0970 28 1 5.0488 0.0091 -1.2532 29 1 3.4006 -0.0472 -2.0784 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110764.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:26 Heat of formation + Delta-G solvation = -7.922797 kcal Electronic energy + Delta-G solvation = -14558.513965 eV Core-core repulsion = 11975.075331 eV Total energy + Delta-G solvation = -2583.438634 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.57579 -40.33261 -38.36018 -34.45887 -33.88196 -31.86304 -28.99455 -27.78958 -24.24970 -23.25152 -22.90364 -21.16614 -18.93070 -18.33337 -17.91343 -17.10998 -16.72152 -16.31886 -15.86363 -15.20811 -15.00744 -14.67388 -14.24242 -13.87798 -13.72961 -13.56093 -13.07224 -12.87503 -12.55654 -12.17918 -11.86982 -11.71080 -11.51440 -10.81395 -10.50825 -10.40558 -9.90864 -8.33464 -8.07879 -6.44606 0.46858 0.60541 1.36116 1.36907 1.49058 2.33782 2.56381 2.91486 3.08480 3.18898 3.61186 3.98830 4.09874 4.28162 4.31542 4.42702 4.50120 4.67357 4.79515 4.98600 5.08034 5.12255 5.38757 5.39863 5.48619 5.53035 5.60352 6.01938 6.23093 6.66121 6.68373 7.06780 7.29921 8.81434 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.038862 B = 0.008223 C = 0.008121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.333818 B = 3404.472208 C = 3446.885431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.026 3.974 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.301 1.301 6 H -0.235 1.235 7 C -0.492 4.492 8 H 0.034 0.966 9 C 0.196 3.804 10 N -0.710 5.710 11 C 0.217 3.783 12 C -0.174 4.174 13 C -0.111 4.111 14 C 0.001 3.999 15 F -0.157 7.157 16 C -0.099 4.099 17 C -0.184 4.184 18 C -0.166 4.166 19 C -0.185 4.185 20 H 0.267 0.733 21 H 0.394 0.606 22 H 0.118 0.882 23 H 0.137 0.863 24 H 0.155 0.845 25 H 0.149 0.851 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 -2.017 3.142 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.173 4.173 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.228 1.228 6 H -0.158 1.158 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.110 3.890 10 N -0.336 5.336 11 C 0.111 3.889 12 C -0.197 4.197 13 C -0.130 4.130 14 C -0.020 4.020 15 F -0.136 7.136 16 C -0.118 4.118 17 C -0.206 4.206 18 C -0.204 4.204 19 C -0.223 4.223 20 H 0.076 0.924 21 H 0.231 0.769 22 H 0.136 0.864 23 H 0.155 0.845 24 H 0.173 0.827 25 H 0.166 0.834 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.124 0.876 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.217 -1.963 2.972 12.725 hybrid contribution -0.416 0.744 0.125 0.861 sum 11.801 -1.218 3.097 12.261 Atomic orbital electron populations 1.70052 1.08546 1.28355 1.51028 1.25903 0.95212 1.03203 0.93002 0.85725 0.79928 0.78014 0.78820 1.19196 1.22850 1.15773 1.20587 0.89143 0.93081 1.50331 0.94734 1.18331 0.88361 1.03192 0.79082 1.44926 1.58350 1.07429 1.22894 1.18159 0.92303 0.87609 0.90833 1.20658 1.03826 0.92127 1.03076 1.20989 0.98365 0.99348 0.94307 1.17524 1.05812 0.83953 0.94759 1.91397 1.94646 1.51627 1.75941 1.21002 0.99677 0.90552 1.00600 1.20644 1.03620 0.99904 0.96473 1.23126 1.01788 0.93058 1.02422 1.23267 1.02138 0.95871 1.01040 0.92380 0.76948 0.86411 0.84534 0.82736 0.83376 0.89475 0.88463 0.87607 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.50 13.96 21.45 0.30 -56.20 15 2 C 0.03 1.44 5.46 84.66 0.46 1.90 15 3 Si 0.95 41.36 25.41 68.60 1.74 43.11 15 4 H -0.27 -11.08 7.11 99.48 0.71 -10.38 15 5 H -0.30 -13.50 7.11 99.48 0.71 -12.79 15 6 H -0.23 -8.89 5.95 99.48 0.59 -8.30 15 7 C -0.49 -26.28 9.13 25.60 0.23 -26.05 15 8 H 0.03 2.11 7.76 -2.91 -0.02 2.08 15 9 C 0.20 8.21 0.31 2.86 0.00 8.21 15 10 N -0.71 -26.49 5.50 -302.72 -1.66 -28.15 15 11 C 0.22 7.78 6.58 38.17 0.25 8.03 15 12 C -0.17 -6.55 8.92 22.39 0.20 -6.35 15 13 C -0.11 -3.71 10.02 22.30 0.22 -3.48 15 14 C 0.00 0.02 7.30 22.38 0.16 0.19 15 15 F -0.16 -4.91 17.26 44.97 0.78 -4.13 15 16 C -0.10 -2.76 10.02 22.30 0.22 -2.54 15 17 C -0.18 -5.39 9.90 22.40 0.22 -5.16 15 18 C -0.17 -6.04 8.94 30.60 0.27 -5.77 15 19 C -0.19 -6.74 7.89 30.60 0.24 -6.50 15 20 H 0.27 15.07 8.31 -92.71 -0.77 14.29 15 21 H 0.39 13.23 7.87 -92.71 -0.73 12.50 15 22 H 0.12 4.93 5.76 -2.91 -0.02 4.92 15 23 H 0.14 4.09 8.06 -2.91 -0.02 4.06 15 24 H 0.15 3.32 8.06 -2.91 -0.02 3.29 15 25 H 0.15 3.49 8.06 -2.91 -0.02 3.47 15 26 H 0.09 3.27 8.14 -2.39 -0.02 3.25 15 27 H 0.10 3.17 8.14 -2.38 -0.02 3.15 15 28 H 0.11 3.25 8.14 -2.39 -0.02 3.23 15 29 H 0.09 3.31 7.29 -2.39 -0.02 3.30 15 Total: -1.00 -60.79 252.35 3.97 -56.82 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.32 Total: 26.08 kcal Atomic # 6 Polarization: -40.02 SS G_CDS: 2.49 Total: -37.53 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -1.36 Total: -84.35 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.78 Total: -4.13 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 1.74 Total: 43.11 kcal Total: -60.79 3.97 -56.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110764.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.898 kcal (2) G-P(sol) polarization free energy of solvation -60.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds