Wall clock time and date at job start Mon Mar 30 2020 03:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31877 * 119.02524 * 2 1 4 4 C 1.32296 * 120.78156 * 180.02562 * 3 2 1 5 5 C 1.38490 * 119.24608 * 0.02562 * 4 3 2 6 6 C 1.39004 * 118.64851 * 359.97100 * 5 4 3 7 7 O 1.35516 * 120.63729 * 180.02562 * 6 5 4 8 8 N 1.31773 * 119.02232 * 179.97438 * 2 1 3 9 9 C 1.50862 * 108.47147 * 179.97438 * 5 4 3 10 10 H 1.08998 * 110.28412 * 223.61131 * 9 5 4 11 11 C 1.50703 * 110.21570 * 101.72471 * 9 5 4 12 12 H 1.08003 * 119.99791 * 2.34054 * 11 9 5 13 13 C 1.37871 * 120.00180 * 182.33011 * 11 9 5 14 14 N 1.31516 * 119.99896 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00056 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.46973 * 59.99984 * 15 13 11 17 17 H 1.48498 * 109.47217 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47436 * 300.00350 * 15 13 11 19 19 N 1.48131 * 105.63990 * 342.68835 * 9 5 4 20 20 C 1.48107 * 103.88868 * 27.31594 * 19 9 5 21 21 H 1.08998 * 109.47505 * 89.99718 * 1 2 3 22 22 H 1.09005 * 109.46878 * 209.99947 * 1 2 3 23 23 H 1.08999 * 109.46727 * 329.99493 * 1 2 3 24 24 H 0.96702 * 113.99323 * 90.00318 * 7 6 5 25 25 H 0.97001 * 119.99741 * 179.97438 * 14 13 11 26 26 H 1.00906 * 111.00054 * 146.67981 * 19 9 5 27 27 H 1.09002 * 110.20348 * 91.71444 * 20 19 9 28 28 H 1.09001 * 110.20597 * 213.51759 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1469 1.1531 0.0000 4 6 3.4693 1.1937 -0.0005 5 6 4.1826 0.0066 -0.0016 6 6 3.4802 -1.1929 -0.0015 7 8 4.1375 -2.3780 -0.0020 8 7 2.1463 -1.1523 0.0005 9 6 5.6553 0.3339 -0.0026 10 1 6.1842 -0.3064 -0.7085 11 6 6.2271 0.1658 1.3816 12 1 5.5984 -0.1854 2.1865 13 6 7.5527 0.4601 1.6203 14 7 8.3181 0.8881 0.6402 15 14 8.2616 0.2510 3.3359 16 1 8.1272 -1.1665 3.7575 17 1 9.6969 0.6318 3.3282 18 1 7.5240 1.1220 4.2859 19 7 5.7493 1.7502 -0.4265 20 6 4.4575 2.3355 0.0003 21 1 -0.3634 0.0001 -1.0276 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8899 0.5139 24 1 4.3286 -2.7221 0.8813 25 1 9.2506 1.0955 0.8082 26 1 6.5232 2.2127 0.0266 27 1 4.5471 2.7551 1.0023 28 1 4.1427 3.1063 -0.7032 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130169.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:25 Heat of formation + Delta-G solvation = -8.750741 kcal Electronic energy + Delta-G solvation = -14927.277545 eV Core-core repulsion = 12363.722970 eV Total energy + Delta-G solvation = -2563.554575 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.46896 -38.82041 -38.52917 -34.81105 -33.69400 -32.57160 -30.35221 -28.60926 -26.69920 -24.84925 -22.80266 -22.30565 -19.72774 -19.30642 -18.39219 -17.01710 -16.97459 -16.07726 -15.67467 -15.23032 -14.96190 -14.83572 -14.33109 -13.81612 -13.31399 -13.28848 -13.11182 -13.01542 -12.78198 -12.66339 -12.40553 -12.05211 -11.41705 -11.38153 -10.77286 -10.34779 -10.19648 -9.18148 -8.19873 -6.47867 -0.16493 -0.09317 1.40384 1.42039 1.49937 2.29549 2.35037 2.62475 2.64313 2.98607 3.41056 3.63443 3.88565 3.98046 4.31081 4.51401 4.60996 4.70257 4.75516 4.89887 5.02124 5.35745 5.39920 5.55355 5.79031 5.89121 6.04394 6.49828 6.60637 6.77231 7.01080 7.25571 8.78022 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037038 B = 0.009462 C = 0.008637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.808709 B = 2958.507935 C = 3240.959309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.312 3.688 3 N -0.523 5.523 4 C 0.167 3.833 5 C -0.213 4.213 6 C 0.358 3.642 7 O -0.479 6.479 8 N -0.549 5.549 9 C 0.249 3.751 10 H 0.024 0.976 11 C -0.563 4.563 12 H 0.049 0.951 13 C 0.034 3.966 14 N -0.901 5.901 15 Si 0.962 3.038 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.272 1.272 19 N -0.660 5.660 20 C 0.097 3.903 21 H 0.101 0.899 22 H 0.098 0.902 23 H 0.101 0.899 24 H 0.420 0.580 25 H 0.272 0.728 26 H 0.359 0.641 27 H 0.070 0.930 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 -0.020 2.024 10.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.045 3.955 3 N -0.240 5.240 4 C 0.020 3.980 5 C -0.219 4.219 6 C 0.172 3.828 7 O -0.288 6.288 8 N -0.275 5.275 9 C 0.140 3.860 10 H 0.042 0.958 11 C -0.602 4.602 12 H 0.068 0.932 13 C -0.169 4.169 14 N -0.538 5.538 15 Si 0.787 3.213 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.197 1.197 19 N -0.292 5.292 20 C -0.033 4.033 21 H 0.120 0.880 22 H 0.117 0.883 23 H 0.120 0.880 24 H 0.282 0.718 25 H 0.082 0.918 26 H 0.179 0.821 27 H 0.087 0.913 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.684 -0.053 0.642 10.704 hybrid contribution 1.902 -0.431 2.128 2.887 sum -8.783 -0.484 2.770 9.222 Atomic orbital electron populations 1.20682 0.81700 1.05376 1.05229 1.23971 0.99649 0.81299 0.90571 1.67482 1.08343 1.31052 1.17145 1.22497 0.89837 0.96303 0.89369 1.22861 1.01330 0.94938 1.02819 1.19074 0.86671 0.85099 0.91931 1.84584 1.74582 1.34106 1.35567 1.68101 1.08497 1.32219 1.18718 1.18192 0.84987 0.88150 0.94681 0.95840 1.21482 0.95970 1.48218 0.94540 0.93238 1.25719 0.96636 0.93620 1.00917 1.69976 1.07511 1.43347 1.32964 0.85554 0.77429 0.78796 0.79538 1.19700 1.20419 1.19742 1.63921 1.03108 1.04248 1.57963 1.21332 0.87687 0.93281 1.01023 0.88038 0.88339 0.88048 0.71779 0.91838 0.82141 0.91261 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 10.31 71.24 0.73 -0.85 15 2 C 0.31 10.82 7.64 138.73 1.06 11.88 15 3 N -0.52 -19.94 10.34 -175.78 -1.82 -21.75 15 4 C 0.17 7.05 7.50 42.65 0.32 7.37 15 5 C -0.21 -9.77 5.54 -19.57 -0.11 -9.88 15 6 C 0.36 15.11 7.86 84.63 0.67 15.78 15 7 O -0.48 -18.51 13.58 -88.18 -1.20 -19.71 15 8 N -0.55 -21.08 10.38 -300.16 -3.12 -24.20 15 9 C 0.25 12.64 3.24 43.24 0.14 12.78 15 10 H 0.02 1.37 8.14 -2.39 -0.02 1.35 15 11 C -0.56 -29.20 8.61 25.60 0.22 -28.98 15 12 H 0.05 2.56 7.76 -2.91 -0.02 2.54 15 13 C 0.03 1.73 5.13 84.65 0.43 2.17 15 14 N -0.90 -47.94 11.98 21.45 0.26 -47.69 15 15 Si 0.96 40.32 29.54 68.60 2.03 42.35 15 16 H -0.27 -11.21 7.11 99.48 0.71 -10.51 15 17 H -0.28 -11.44 7.11 99.48 0.71 -10.74 15 18 H -0.27 -11.19 7.11 99.48 0.71 -10.49 15 19 N -0.66 -31.15 7.54 -496.80 -3.75 -34.90 15 20 C 0.10 3.89 7.37 85.42 0.63 4.52 15 21 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 22 H 0.10 1.88 8.14 -2.38 -0.02 1.86 15 23 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.42 12.37 9.06 -74.06 -0.67 11.70 15 25 H 0.27 13.71 8.31 -92.71 -0.77 12.94 15 26 H 0.36 17.70 6.81 -89.69 -0.61 17.09 15 27 H 0.07 2.68 8.14 -2.39 -0.02 2.66 15 28 H 0.11 3.81 8.14 -2.39 -0.02 3.79 15 Total: -1.00 -61.58 248.68 -3.57 -65.15 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: -0.07 Total: 25.97 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 4.10 Total: 14.78 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -8.42 Total: -128.53 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -1.20 Total: -19.71 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -61.58 -3.57 -65.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130169.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.401 kcal (2) G-P(sol) polarization free energy of solvation -61.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds