Wall clock time and date at job start Mon Mar 30 2020 03:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31879 * 119.02296 * 2 1 4 4 C 1.32305 * 120.77740 * 180.02562 * 3 2 1 5 5 C 1.38295 * 119.14757 * 359.97438 * 4 3 2 6 6 C 1.39008 * 118.66679 * 0.02562 * 5 4 3 7 7 O 1.35520 * 120.62765 * 179.97438 * 6 5 4 8 8 N 1.31779 * 119.02413 * 180.02562 * 2 1 3 9 9 C 1.50860 * 108.44706 * 180.02562 * 5 4 3 10 10 H 1.08994 * 110.21635 * 136.36905 * 9 5 4 11 11 C 1.50706 * 110.21467 * 258.28515 * 9 5 4 12 12 H 1.07993 * 119.99863 * 22.56690 * 11 9 5 13 13 C 1.37876 * 119.99588 * 202.57946 * 11 9 5 14 14 N 1.31513 * 119.99788 * 179.90916 * 13 11 9 15 15 Si 1.86801 * 120.00456 * 359.90126 * 13 11 9 16 16 H 1.48495 * 109.46880 * 84.79896 * 15 13 11 17 17 H 1.48491 * 109.47075 * 204.80155 * 15 13 11 18 18 H 1.48504 * 109.46932 * 324.80072 * 15 13 11 19 19 N 1.48134 * 105.64262 * 17.32138 * 9 5 4 20 20 C 1.48106 * 103.88815 * 332.69126 * 19 9 5 21 21 H 1.08998 * 109.47352 * 89.99894 * 1 2 3 22 22 H 1.09001 * 109.47220 * 210.00290 * 1 2 3 23 23 H 1.09005 * 109.47299 * 329.99805 * 1 2 3 24 24 H 0.96697 * 113.99960 * 269.99511 * 7 6 5 25 25 H 0.97002 * 120.00506 * 179.97438 * 14 13 11 26 26 H 1.00900 * 110.99848 * 213.32498 * 19 9 5 27 27 H 1.08996 * 110.20619 * 146.39739 * 20 19 9 28 28 H 1.08995 * 110.20220 * 268.20573 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1468 1.1532 0.0000 4 6 3.4692 1.1937 -0.0005 5 6 4.1794 0.0071 -0.0005 6 6 3.4753 -1.1915 -0.0005 7 8 4.1311 -2.3775 -0.0010 8 7 2.1463 -1.1523 -0.0005 9 6 5.6525 0.3324 -0.0005 10 1 6.1800 -0.3092 0.7052 11 6 6.2230 0.1643 -1.3853 12 1 5.5732 0.2133 -2.2465 13 6 7.5743 -0.0522 -1.5525 14 7 8.0718 -0.2007 -2.7608 15 14 8.6985 -0.1346 -0.0629 16 1 8.6866 -1.5125 0.4906 17 1 10.0816 0.2249 -0.4662 18 1 8.2208 0.8184 0.9710 19 7 5.7488 1.7483 0.4242 20 6 4.4574 2.3356 -0.0010 21 1 -0.3634 0.0000 -1.0276 22 1 -0.3634 -0.8900 0.5139 23 1 -0.3634 0.8900 0.5139 24 1 4.3211 -2.7215 -0.8845 25 1 9.0226 -0.3527 -2.8786 26 1 6.5229 2.2100 -0.0294 27 1 4.1436 3.1053 0.7040 28 1 4.5471 2.7569 -1.0023 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130170.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:32 Heat of formation + Delta-G solvation = -7.917438 kcal Electronic energy + Delta-G solvation = -14952.249447 eV Core-core repulsion = 12388.731007 eV Total energy + Delta-G solvation = -2563.518440 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.55762 -38.92116 -38.56924 -34.82945 -33.85083 -32.73172 -30.62493 -28.91613 -26.61919 -24.82535 -22.87529 -22.18659 -19.78306 -19.33808 -18.95891 -17.06585 -16.94398 -15.98472 -15.84799 -15.36977 -15.00004 -14.92250 -14.61695 -13.90290 -13.54957 -13.29888 -13.17743 -13.10791 -12.79390 -12.66035 -12.26935 -11.85103 -11.48591 -11.45188 -10.95326 -10.38016 -10.32881 -9.27794 -8.42843 -6.56885 -0.18524 -0.12665 1.37580 1.41481 1.55343 2.28743 2.29103 2.59361 2.61800 2.89971 3.36445 3.48337 3.80371 3.86767 4.23342 4.47886 4.55620 4.68299 4.74490 4.85596 4.98192 5.00549 5.21899 5.36675 5.68671 5.86012 6.08913 6.39350 6.45607 6.54880 6.98694 7.15208 8.71375 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.039220 B = 0.010012 C = 0.008998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.746208 B = 2796.030543 C = 3111.168540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.315 3.685 3 N -0.522 5.522 4 C 0.165 3.835 5 C -0.213 4.213 6 C 0.362 3.638 7 O -0.481 6.481 8 N -0.550 5.550 9 C 0.217 3.783 10 H 0.057 0.943 11 C -0.543 4.543 12 H 0.029 0.971 13 C 0.041 3.959 14 N -0.928 5.928 15 Si 0.935 3.065 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.230 1.230 19 N -0.663 5.663 20 C 0.100 3.900 21 H 0.101 0.899 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.421 0.579 25 H 0.273 0.727 26 H 0.351 0.649 27 H 0.121 0.879 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.240 1.935 5.603 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.048 3.952 3 N -0.239 5.239 4 C 0.018 3.982 5 C -0.219 4.219 6 C 0.176 3.824 7 O -0.290 6.290 8 N -0.277 5.277 9 C 0.108 3.892 10 H 0.075 0.925 11 C -0.582 4.582 12 H 0.047 0.953 13 C -0.161 4.161 14 N -0.565 5.565 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.152 1.152 19 N -0.293 5.293 20 C -0.030 4.030 21 H 0.120 0.880 22 H 0.116 0.884 23 H 0.121 0.879 24 H 0.283 0.717 25 H 0.082 0.918 26 H 0.169 0.831 27 H 0.138 0.862 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.159 1.821 6.824 12.373 hybrid contribution 1.956 -0.572 -1.490 2.524 sum -8.204 1.249 5.334 9.865 Atomic orbital electron populations 1.20689 0.81750 1.05413 1.05237 1.23960 0.99665 0.81280 0.90336 1.67487 1.08434 1.30938 1.17089 1.22505 0.89970 0.96313 0.89415 1.22576 1.00798 0.95065 1.03500 1.18967 0.86712 0.85206 0.91521 1.84546 1.74719 1.34118 1.35646 1.67946 1.08678 1.32357 1.18669 1.18609 0.87387 0.88848 0.94339 0.92504 1.21190 0.93423 1.52522 0.91072 0.95276 1.25771 0.99323 0.92413 0.98584 1.70008 1.14552 1.48123 1.23840 0.85909 0.77704 0.80264 0.80376 1.19891 1.20977 1.15239 1.64195 1.03643 1.03697 1.57795 1.21295 0.86866 0.93167 1.01652 0.88044 0.88426 0.87912 0.71734 0.91812 0.83119 0.86162 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.31 71.23 0.73 -0.84 15 2 C 0.31 10.67 7.64 138.73 1.06 11.72 15 3 N -0.52 -19.15 10.34 -175.92 -1.82 -20.97 15 4 C 0.16 6.56 7.50 42.60 0.32 6.88 15 5 C -0.21 -9.29 5.56 -19.62 -0.11 -9.40 15 6 C 0.36 15.01 7.84 84.71 0.66 15.68 15 7 O -0.48 -18.47 13.58 -88.23 -1.20 -19.67 15 8 N -0.55 -20.89 10.36 -300.75 -3.12 -24.01 15 9 C 0.22 9.92 2.67 43.24 0.12 10.04 15 10 H 0.06 2.70 6.20 -2.39 -0.01 2.68 15 11 C -0.54 -28.61 8.84 25.60 0.23 -28.38 15 12 H 0.03 1.75 8.05 -2.91 -0.02 1.72 15 13 C 0.04 2.19 5.47 84.65 0.46 2.65 15 14 N -0.93 -53.34 13.96 21.45 0.30 -53.05 15 15 Si 0.93 40.76 26.51 68.60 1.82 42.58 15 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 17 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 18 H -0.23 -9.31 6.88 99.48 0.68 -8.63 15 19 N -0.66 -26.49 7.29 -496.80 -3.62 -30.11 15 20 C 0.10 3.57 7.38 85.43 0.63 4.20 15 21 H 0.10 1.87 8.14 -2.39 -0.02 1.85 15 22 H 0.10 1.85 8.14 -2.39 -0.02 1.83 15 23 H 0.10 1.87 8.14 -2.38 -0.02 1.85 15 24 H 0.42 13.09 9.06 -74.06 -0.67 12.42 15 25 H 0.27 14.67 8.31 -92.71 -0.77 13.90 15 26 H 0.35 13.83 8.04 -89.69 -0.72 13.11 15 27 H 0.12 3.55 8.14 -2.39 -0.02 3.53 15 28 H 0.07 2.59 8.14 -2.39 -0.02 2.57 15 Total: -1.00 -64.87 246.69 -3.73 -68.60 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -0.20 Total: 24.08 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 4.10 Total: 12.54 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -8.26 Total: -128.14 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.20 Total: -19.67 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.82 Total: 42.58 kcal Total: -64.87 -3.73 -68.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130170.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.686 kcal (2) G-P(sol) polarization free energy of solvation -64.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds