Wall clock time and date at job start Mon Mar 30 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99598 * 2 1 4 4 H 1.48507 * 109.46503 * 269.99250 * 3 2 1 5 5 H 1.48499 * 109.47431 * 29.99042 * 3 2 1 6 6 H 1.48498 * 109.47291 * 150.00156 * 3 2 1 7 7 C 1.37875 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00053 * 175.10882 * 7 2 1 9 9 C 1.50702 * 119.99862 * 355.10586 * 7 2 1 10 10 N 1.46489 * 115.55133 * 39.72220 * 9 7 2 11 11 C 1.39854 * 120.00298 * 80.08076 * 10 9 7 12 12 C 1.38830 * 120.07564 * 4.71643 * 11 10 9 13 13 C 1.38146 * 119.94543 * 180.02562 * 12 11 10 14 14 C 1.38270 * 120.11614 * 359.97438 * 13 12 11 15 15 C 1.38293 * 120.15990 * 0.02950 * 14 13 12 16 16 C 1.38278 * 120.04808 * 359.67557 * 15 14 13 17 17 F 1.35096 * 120.05892 * 180.32444 * 16 15 14 18 18 C 1.53002 * 117.49834 * 185.38979 * 9 7 2 19 19 C 1.52997 * 60.03320 * 107.49873 * 18 9 7 20 20 H 0.96994 * 120.00451 * 5.00679 * 1 2 3 21 21 H 0.97000 * 120.00169 * 260.08576 * 10 9 7 22 22 H 1.08000 * 120.02775 * 359.97438 * 12 11 10 23 23 H 1.08001 * 119.94254 * 179.97438 * 13 12 11 24 24 H 1.08004 * 119.92131 * 180.02562 * 14 13 12 25 25 H 1.08003 * 119.97186 * 179.97438 * 15 14 13 26 26 H 1.08996 * 117.50132 * 215.00422 * 18 9 7 27 27 H 1.09001 * 117.49628 * 359.97438 * 18 9 7 28 28 H 1.09006 * 117.49251 * 107.50019 * 19 18 9 29 29 H 1.08993 * 117.50253 * 252.51805 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4464 2.6528 0.6998 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0792 9 6 1.2552 -2.4967 0.1125 10 7 -0.0001 -2.5701 -0.6390 11 6 0.0214 -2.8317 -2.0127 12 6 1.2222 -3.1188 -2.6475 13 6 1.2404 -3.3763 -4.0046 14 6 0.0647 -3.3491 -4.7318 15 6 -1.1340 -3.0635 -4.1041 16 6 -1.1609 -2.8108 -2.7449 17 9 -2.3326 -2.5382 -2.1302 18 6 2.0814 -3.7787 0.2346 19 6 1.3237 -3.2392 1.4493 20 1 -0.4850 0.8368 -0.0733 21 1 -0.8463 -2.4372 -0.1838 22 1 2.1415 -3.1400 -2.0810 23 1 2.1747 -3.5992 -4.4985 24 1 0.0825 -3.5512 -5.7926 25 1 -2.0505 -3.0427 -4.6751 26 1 1.6909 -4.6766 -0.2441 27 1 3.1669 -3.6798 0.2336 28 1 0.4345 -3.7823 1.7697 29 1 1.9105 -2.7852 2.2477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261160164.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:30 Heat of formation + Delta-G solvation = 7.531074 kcal Electronic energy + Delta-G solvation = -14928.019140 eV Core-core repulsion = 12345.250636 eV Total energy + Delta-G solvation = -2582.768504 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -47.88618 -38.45658 -36.56766 -32.42237 -32.23642 -29.69496 -27.55391 -25.68083 -22.32216 -21.66425 -20.99382 -19.47256 -17.03460 -16.82260 -15.94181 -15.14926 -14.79415 -14.63064 -14.09822 -13.78796 -13.43586 -13.01928 -12.32378 -12.07606 -11.74506 -11.18962 -11.08930 -11.04771 -10.72852 -10.52304 -10.45666 -10.00499 -9.88382 -9.10968 -8.81440 -8.38246 -8.04018 -6.48303 -5.97199 -4.26204 2.03273 2.34760 3.21866 3.29542 3.31308 4.27431 4.43039 4.61898 4.84337 5.21615 5.37534 5.51801 5.66944 5.96671 6.10113 6.16486 6.20196 6.42167 6.51568 6.64354 6.78273 6.81784 6.94178 7.11887 7.18521 7.27992 7.60713 7.72391 8.04848 8.50274 8.79011 8.97603 9.39227 10.87117 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024994 B = 0.011318 C = 0.010348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.015851 B = 2473.439721 C = 2705.059797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.079 3.921 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.068 0.932 9 C 0.269 3.731 10 N -0.660 5.660 11 C 0.237 3.763 12 C -0.174 4.174 13 C -0.085 4.085 14 C -0.190 4.190 15 C -0.110 4.110 16 C -0.011 4.011 17 F -0.152 7.152 18 C -0.213 4.213 19 C -0.200 4.200 20 H 0.263 0.737 21 H 0.398 0.602 22 H 0.135 0.865 23 H 0.114 0.886 24 H 0.112 0.888 25 H 0.118 0.882 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.397 -5.236 -4.391 6.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.127 4.127 3 Si 0.724 3.276 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.547 4.547 8 H 0.087 0.913 9 C 0.182 3.818 10 N -0.279 5.279 11 C 0.125 3.875 12 C -0.197 4.197 13 C -0.104 4.104 14 C -0.212 4.212 15 C -0.129 4.129 16 C -0.035 4.035 17 F -0.131 7.131 18 C -0.251 4.251 19 C -0.239 4.239 20 H 0.073 0.927 21 H 0.233 0.767 22 H 0.153 0.847 23 H 0.132 0.868 24 H 0.130 0.870 25 H 0.136 0.864 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.355 -5.066 -4.110 6.533 hybrid contribution -0.183 1.123 0.259 1.167 sum 0.172 -3.943 -3.852 5.515 Atomic orbital electron populations 1.69911 1.06048 1.27244 1.46793 1.25013 0.94864 0.99298 0.93556 0.86513 0.79876 0.82910 0.78337 1.20442 1.21057 1.19599 1.20731 0.92854 0.88487 1.52579 0.91350 1.18196 0.83643 0.89737 0.90190 1.44250 1.08505 1.71979 1.03192 1.17871 0.92133 0.91868 0.85674 1.20690 0.97054 1.07314 0.94659 1.20822 0.97418 0.98522 0.93676 1.20415 0.92108 1.09503 0.99124 1.20670 0.98821 1.01310 0.92127 1.17148 0.80621 1.14448 0.91304 1.91372 1.45783 1.92604 1.83362 1.23264 0.98393 0.99528 1.03956 1.23268 1.01425 1.05776 0.93441 0.92660 0.76686 0.84729 0.86834 0.86953 0.86421 0.90679 0.89762 0.91237 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.76 11.92 55.43 0.66 -23.10 15 2 C 0.08 2.09 5.43 -17.82 -0.10 2.00 15 3 Si 0.90 20.67 29.54 -169.99 -5.02 15.64 15 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 7 C -0.51 -13.23 9.08 -34.44 -0.31 -13.54 15 8 H 0.07 1.75 7.82 -52.49 -0.41 1.34 15 9 C 0.27 6.34 1.43 -132.94 -0.19 6.15 15 10 N -0.66 -15.57 4.13 -46.96 -0.19 -15.76 15 11 C 0.24 5.30 6.63 -83.67 -0.55 4.74 15 12 C -0.17 -3.58 9.02 -39.40 -0.36 -3.94 15 13 C -0.09 -1.50 10.04 -39.60 -0.40 -1.89 15 14 C -0.19 -3.19 10.04 -39.55 -0.40 -3.59 15 15 C -0.11 -2.00 10.02 -39.55 -0.40 -2.39 15 16 C -0.01 -0.23 7.31 -39.25 -0.29 -0.52 15 17 F -0.15 -3.33 16.65 2.25 0.04 -3.29 15 18 C -0.21 -4.33 8.30 -26.73 -0.22 -4.55 15 19 C -0.20 -4.25 10.17 -26.69 -0.27 -4.52 15 20 H 0.26 7.04 8.32 -40.82 -0.34 6.70 15 21 H 0.40 9.66 8.12 -40.82 -0.33 9.33 15 22 H 0.13 2.83 5.82 -52.49 -0.31 2.52 15 23 H 0.11 1.65 8.06 -52.49 -0.42 1.23 15 24 H 0.11 1.53 8.06 -52.48 -0.42 1.11 15 25 H 0.12 1.83 8.06 -52.48 -0.42 1.41 15 26 H 0.07 1.45 8.14 -51.93 -0.42 1.03 15 27 H 0.08 1.63 8.14 -51.93 -0.42 1.21 15 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 29 H 0.09 1.83 8.14 -51.93 -0.42 1.41 15 LS Contribution 257.85 15.07 3.89 3.89 Total: -1.00 -27.13 257.85 -7.26 -34.38 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -3.14 Total: 10.30 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -3.48 Total: -22.05 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.47 Total: -38.87 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.04 Total: -3.29 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -27.13 -7.26 -34.38 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160164.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.915 kcal (2) G-P(sol) polarization free energy of solvation -27.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds