Wall clock time and date at job start Mon Mar 30 2020 03:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99598 * 2 1 4 4 H 1.48507 * 109.46503 * 269.99250 * 3 2 1 5 5 H 1.48499 * 109.47431 * 29.99042 * 3 2 1 6 6 H 1.48498 * 109.47291 * 150.00156 * 3 2 1 7 7 C 1.37875 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00053 * 175.10882 * 7 2 1 9 9 C 1.50702 * 119.99862 * 355.10586 * 7 2 1 10 10 N 1.46489 * 115.55133 * 39.72220 * 9 7 2 11 11 C 1.39854 * 120.00298 * 80.08076 * 10 9 7 12 12 C 1.38830 * 120.07564 * 4.71643 * 11 10 9 13 13 C 1.38146 * 119.94543 * 180.02562 * 12 11 10 14 14 C 1.38270 * 120.11614 * 359.97438 * 13 12 11 15 15 C 1.38293 * 120.15990 * 0.02950 * 14 13 12 16 16 C 1.38278 * 120.04808 * 359.67557 * 15 14 13 17 17 F 1.35096 * 120.05892 * 180.32444 * 16 15 14 18 18 C 1.53002 * 117.49834 * 185.38979 * 9 7 2 19 19 C 1.52997 * 60.03320 * 107.49873 * 18 9 7 20 20 H 0.96994 * 120.00451 * 5.00679 * 1 2 3 21 21 H 0.97000 * 120.00169 * 260.08576 * 10 9 7 22 22 H 1.08000 * 120.02775 * 359.97438 * 12 11 10 23 23 H 1.08001 * 119.94254 * 179.97438 * 13 12 11 24 24 H 1.08004 * 119.92131 * 180.02562 * 14 13 12 25 25 H 1.08003 * 119.97186 * 179.97438 * 15 14 13 26 26 H 1.08996 * 117.50132 * 215.00422 * 18 9 7 27 27 H 1.09001 * 117.49628 * 359.97438 * 18 9 7 28 28 H 1.09006 * 117.49251 * 107.50019 * 19 18 9 29 29 H 1.08993 * 117.50253 * 252.51805 * 19 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4464 2.6528 0.6998 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0792 9 6 1.2552 -2.4967 0.1125 10 7 -0.0001 -2.5701 -0.6390 11 6 0.0214 -2.8317 -2.0127 12 6 1.2222 -3.1188 -2.6475 13 6 1.2404 -3.3763 -4.0046 14 6 0.0647 -3.3491 -4.7318 15 6 -1.1340 -3.0635 -4.1041 16 6 -1.1609 -2.8108 -2.7449 17 9 -2.3326 -2.5382 -2.1302 18 6 2.0814 -3.7787 0.2346 19 6 1.3237 -3.2392 1.4493 20 1 -0.4850 0.8368 -0.0733 21 1 -0.8463 -2.4372 -0.1838 22 1 2.1415 -3.1400 -2.0810 23 1 2.1747 -3.5992 -4.4985 24 1 0.0825 -3.5512 -5.7926 25 1 -2.0505 -3.0427 -4.6751 26 1 1.6909 -4.6766 -0.2441 27 1 3.1669 -3.6798 0.2336 28 1 0.4345 -3.7823 1.7697 29 1 1.9105 -2.7852 2.2477 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261160164.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:30 Heat of formation + Delta-G solvation = -6.734322 kcal Electronic energy + Delta-G solvation = -14928.637734 eV Core-core repulsion = 12345.250636 eV Total energy + Delta-G solvation = -2583.387098 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.091 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.51719 -40.02150 -38.19564 -34.20171 -34.01475 -31.16862 -29.11559 -27.64141 -23.88432 -23.23856 -22.57786 -21.23270 -18.80006 -18.45583 -17.50424 -16.74060 -16.66832 -16.31179 -15.79788 -15.24789 -15.15081 -14.53652 -14.06675 -13.67847 -13.31150 -13.00662 -12.92386 -12.54472 -12.47405 -12.19249 -12.13936 -11.66894 -11.50833 -10.96591 -10.51394 -10.21941 -9.53048 -8.32352 -7.74257 -6.27538 0.53422 0.87221 1.38430 1.40870 1.49665 2.37366 2.78969 3.00099 3.09120 3.54052 3.69437 4.11714 4.32330 4.43589 4.49838 4.59381 4.66848 4.83536 4.87647 5.07189 5.14735 5.35020 5.46422 5.49481 5.64793 5.67914 5.82052 6.07863 6.27702 6.66579 6.97015 7.19937 7.40381 8.88154 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.024994 B = 0.011318 C = 0.010348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.015851 B = 2473.439721 C = 2705.059797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.032 3.968 3 Si 0.953 3.047 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.519 4.519 8 H 0.065 0.935 9 C 0.238 3.762 10 N -0.671 5.671 11 C 0.206 3.794 12 C -0.191 4.191 13 C -0.079 4.079 14 C -0.175 4.175 15 C -0.108 4.108 16 C -0.041 4.041 17 F -0.165 7.165 18 C -0.185 4.185 19 C -0.198 4.198 20 H 0.258 0.742 21 H 0.386 0.614 22 H 0.125 0.875 23 H 0.149 0.851 24 H 0.156 0.844 25 H 0.145 0.855 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.350 -5.906 -6.132 8.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.171 4.171 3 Si 0.779 3.221 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.151 3.849 10 N -0.290 5.290 11 C 0.096 3.904 12 C -0.214 4.214 13 C -0.098 4.098 14 C -0.196 4.196 15 C -0.127 4.127 16 C -0.066 4.066 17 F -0.144 7.144 18 C -0.224 4.224 19 C -0.236 4.236 20 H 0.067 0.933 21 H 0.220 0.780 22 H 0.143 0.857 23 H 0.167 0.833 24 H 0.173 0.827 25 H 0.162 0.838 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.331 -5.754 -5.874 8.329 hybrid contribution -0.458 1.259 0.694 1.509 sum 0.873 -4.494 -5.179 6.913 Atomic orbital electron populations 1.70053 1.07137 1.27244 1.48423 1.25696 0.95543 1.02120 0.93757 0.85629 0.78996 0.79491 0.77990 1.20665 1.21284 1.18672 1.21047 0.92942 0.89954 1.51793 0.91697 1.18228 0.84589 0.90186 0.91883 1.44093 1.07656 1.73427 1.03849 1.18238 0.93365 0.93297 0.85469 1.20800 0.96037 1.08440 0.96154 1.21257 0.99459 0.96627 0.92430 1.20935 0.90900 1.06709 1.01035 1.21080 1.00817 0.99951 0.90899 1.17584 0.80118 1.16169 0.92698 1.91329 1.46309 1.92922 1.83831 1.23211 0.98577 0.98223 1.02362 1.23267 1.01960 1.05353 0.93068 0.93318 0.78038 0.85715 0.83297 0.82674 0.83761 0.89693 0.88721 0.90437 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.24 11.92 21.45 0.26 -49.99 15 2 C 0.03 1.69 5.43 84.65 0.46 2.15 15 3 Si 0.95 42.81 29.54 68.60 2.03 44.83 15 4 H -0.28 -12.57 7.11 99.48 0.71 -11.87 15 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 15 6 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 7 C -0.52 -27.20 9.08 25.60 0.23 -26.97 15 8 H 0.06 3.33 7.82 -2.91 -0.02 3.31 15 9 C 0.24 11.30 1.43 2.89 0.00 11.30 15 10 N -0.67 -32.35 4.13 -302.48 -1.25 -33.59 15 11 C 0.21 9.27 6.63 38.20 0.25 9.52 15 12 C -0.19 -7.66 9.02 22.39 0.20 -7.46 15 13 C -0.08 -2.51 10.04 22.26 0.22 -2.29 15 14 C -0.18 -5.14 10.04 22.29 0.22 -4.92 15 15 C -0.11 -3.67 10.02 22.29 0.22 -3.44 15 16 C -0.04 -1.76 7.31 22.48 0.16 -1.59 15 17 F -0.16 -7.36 16.65 44.97 0.75 -6.61 15 18 C -0.19 -7.37 8.30 30.59 0.25 -7.12 15 19 C -0.20 -8.36 10.17 30.62 0.31 -8.04 15 20 H 0.26 14.17 8.32 -92.71 -0.77 13.39 15 21 H 0.39 19.58 8.12 -92.71 -0.75 18.83 15 22 H 0.12 5.16 5.82 -2.91 -0.02 5.14 15 23 H 0.15 3.64 8.06 -2.91 -0.02 3.62 15 24 H 0.16 3.28 8.06 -2.91 -0.02 3.25 15 25 H 0.14 4.03 8.06 -2.91 -0.02 4.00 15 26 H 0.08 3.19 8.14 -2.39 -0.02 3.17 15 27 H 0.09 3.53 8.14 -2.39 -0.02 3.51 15 28 H 0.08 3.11 8.14 -2.38 -0.02 3.09 15 29 H 0.09 3.64 8.14 -2.39 -0.02 3.62 15 Total: -1.00 -58.62 257.85 4.74 -53.88 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.41 Total: 30.35 kcal Atomic # 6 Polarization: -41.42 SS G_CDS: 2.55 Total: -38.87 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -0.99 Total: -83.58 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.75 Total: -6.61 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Total: -58.62 4.74 -53.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261160164.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.142 kcal (2) G-P(sol) polarization free energy of solvation -58.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds