Wall clock time and date at job start Mon Mar 30 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31193 * 1 3 3 Si 1.86803 * 120.00250 * 2 1 4 4 H 1.48494 * 109.46845 * 269.99981 * 3 2 1 5 5 H 1.48506 * 109.46964 * 29.99874 * 3 2 1 6 6 H 1.48492 * 109.47258 * 149.99697 * 3 2 1 7 7 C 1.39144 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00584 * 162.75411 * 7 2 1 9 9 N 1.37097 * 119.99947 * 342.75209 * 7 2 1 10 10 C 1.35973 * 120.08392 * 331.21023 * 9 7 2 11 11 N 1.30499 * 121.47394 * 179.97438 * 10 9 7 12 12 C 1.33592 * 121.59767 * 0.03577 * 11 10 9 13 13 C 1.50697 * 120.00924 * 179.97438 * 12 11 10 14 14 C 1.53007 * 117.49799 * 8.63452 * 13 12 11 15 15 C 1.52995 * 60.00068 * 252.51501 * 14 13 12 16 16 C 1.36661 * 119.98167 * 359.97438 * 12 11 10 17 17 N 1.40075 * 120.69773 * 179.97438 * 16 12 11 18 18 C 1.35045 * 120.08444 * 151.50567 * 9 7 2 19 19 O 1.21967 * 120.74589 * 0.02562 * 18 9 7 20 20 H 0.97007 * 119.99741 * 0.02562 * 1 2 3 21 21 H 1.07998 * 119.25837 * 0.02562 * 10 9 7 22 22 H 1.08996 * 115.55096 * 154.34359 * 13 12 11 23 23 H 1.09001 * 117.49529 * 0.02562 * 14 13 12 24 24 H 1.09004 * 117.49270 * 145.02186 * 14 13 12 25 25 H 1.09008 * 117.49847 * 252.51412 * 15 14 13 26 26 H 1.09000 * 117.51996 * 107.48530 * 15 14 13 27 27 H 0.96993 * 119.99948 * 0.02562 * 17 16 12 28 28 H 0.96997 * 119.99930 * 179.72823 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3119 0.0000 0.0000 3 14 2.2460 1.6177 0.0000 4 1 2.4935 2.0463 -1.4000 5 1 1.4434 2.6527 0.7000 6 1 3.5435 1.4402 0.7001 7 6 2.0076 -1.2050 0.0005 8 1 3.0512 -1.2263 -0.2767 9 7 1.3684 -2.3655 0.3531 10 6 0.3231 -2.3309 1.2221 11 7 -0.3051 -3.4186 1.5759 12 6 0.0487 -4.6167 1.1024 13 6 -0.7015 -5.8498 1.5355 14 6 -1.9781 -5.6488 2.3546 15 6 -0.7125 -6.1817 3.0291 16 6 1.0910 -4.7237 0.2250 17 7 1.4749 -5.9724 -0.2804 18 6 1.7789 -3.5465 -0.1572 19 8 2.7183 -3.5975 -0.9335 20 1 -0.4850 0.8401 -0.0004 21 1 0.0053 -1.3819 1.6280 22 1 -0.6790 -6.6842 0.8347 23 1 -2.2756 -4.6246 2.5797 24 1 -2.7959 -6.3511 2.1924 25 1 -0.6975 -7.2347 3.3108 26 1 -0.1768 -5.5084 3.6983 27 1 0.9992 -6.7727 -0.0085 28 1 2.2137 -6.0361 -0.9057 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244769.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:08 Heat of formation + Delta-G solvation = 9.135070 kcal Electronic energy + Delta-G solvation = -14883.652459 eV Core-core repulsion = 12320.873471 eV Total energy + Delta-G solvation = -2562.778988 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.29310 -38.85790 -37.87953 -36.23612 -34.94870 -33.43037 -29.59545 -28.11691 -25.22655 -24.46238 -23.06229 -21.62873 -20.47552 -19.45147 -17.68617 -17.40386 -17.17032 -16.52579 -16.31824 -15.87629 -15.32553 -14.88246 -14.60161 -13.88496 -13.56160 -13.39877 -13.02304 -12.68218 -12.40304 -12.21504 -12.07529 -11.33089 -11.29731 -11.21294 -10.84601 -10.60491 -10.29776 -8.83767 -7.91765 -6.56435 0.27140 1.16000 1.38773 1.44003 1.56328 2.08881 2.48438 2.58361 3.00252 3.24315 3.41256 3.59636 3.77403 4.08579 4.24352 4.35125 4.67963 4.86818 4.90227 5.00420 5.11252 5.27931 5.41929 5.49315 5.60926 6.11023 6.41558 6.60234 6.78227 7.15161 7.44751 7.53679 8.24564 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.039340 B = 0.009276 C = 0.007833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.565214 B = 3017.752238 C = 3573.600673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.023 3.977 3 Si 1.014 2.986 4 H -0.269 1.269 5 H -0.252 1.252 6 H -0.260 1.260 7 C -0.382 4.382 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.297 3.703 11 N -0.525 5.525 12 C 0.077 3.923 13 C -0.113 4.113 14 C -0.154 4.154 15 C -0.151 4.151 16 C 0.015 3.985 17 N -0.850 5.850 18 C 0.421 3.579 19 O -0.633 6.633 20 H 0.299 0.701 21 H 0.197 0.803 22 H 0.128 0.872 23 H 0.087 0.913 24 H 0.119 0.881 25 H 0.125 0.875 26 H 0.077 0.923 27 H 0.408 0.592 28 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 -5.614 5.374 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.186 4.186 3 Si 0.833 3.167 4 H -0.194 1.194 5 H -0.175 1.175 6 H -0.184 1.184 7 C -0.510 4.510 8 H 0.115 0.885 9 N -0.029 5.029 10 C 0.015 3.985 11 N -0.248 5.248 12 C -0.055 4.055 13 C -0.132 4.132 14 C -0.191 4.191 15 C -0.188 4.188 16 C -0.095 4.095 17 N -0.398 5.398 18 C 0.224 3.776 19 O -0.523 6.523 20 H 0.110 0.890 21 H 0.213 0.787 22 H 0.146 0.854 23 H 0.105 0.895 24 H 0.137 0.863 25 H 0.143 0.857 26 H 0.095 0.905 27 H 0.240 0.760 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.930 -5.497 5.428 8.668 hybrid contribution 1.176 0.489 -1.179 1.736 sum -2.754 -5.008 4.249 7.122 Atomic orbital electron populations 1.69802 1.07741 1.31653 1.40052 1.26612 0.96404 1.03597 0.92035 0.84661 0.78444 0.74244 0.79334 1.19390 1.17530 1.18400 1.20210 0.96979 0.83608 1.50242 0.88511 1.42710 1.23591 1.08252 1.28315 1.24839 0.86617 0.98368 0.88632 1.67822 1.30186 0.97168 1.29595 1.19874 0.95211 0.93254 0.97186 1.20647 1.02180 0.94616 0.95750 1.22936 0.91043 1.02892 1.02205 1.22976 1.01090 1.02514 0.92250 1.18888 0.99871 0.88072 1.02627 1.41621 1.40671 1.03368 1.54154 1.17534 0.88966 0.85078 0.85979 1.90662 1.33657 1.86852 1.41138 0.89010 0.78700 0.85404 0.89456 0.86314 0.85722 0.90461 0.75957 0.77672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -42.60 11.18 21.69 0.24 -42.35 15 2 C 0.02 1.11 5.01 85.01 0.43 1.54 15 3 Si 1.01 37.64 29.59 68.60 2.03 39.67 15 4 H -0.27 -9.94 7.11 99.48 0.71 -9.24 15 5 H -0.25 -8.42 7.11 99.48 0.71 -7.71 15 6 H -0.26 -9.57 7.11 99.48 0.71 -8.87 15 7 C -0.38 -21.19 9.14 84.09 0.77 -20.42 15 8 H 0.10 5.59 7.59 -2.91 -0.02 5.57 15 9 N -0.33 -18.24 2.74 -479.03 -1.31 -19.55 15 10 C 0.30 14.93 10.32 179.96 1.86 16.79 15 11 N -0.52 -24.01 9.40 -186.56 -1.75 -25.76 15 12 C 0.08 3.26 6.45 41.92 0.27 3.53 15 13 C -0.11 -3.49 5.53 -11.54 -0.06 -3.55 15 14 C -0.15 -4.11 10.03 30.59 0.31 -3.80 15 15 C -0.15 -3.85 10.23 30.59 0.31 -3.54 15 16 C 0.01 0.68 6.78 38.29 0.26 0.94 15 17 N -0.85 -31.21 9.03 -50.77 -0.46 -31.67 15 18 C 0.42 23.62 7.43 85.03 0.63 24.26 15 19 O -0.63 -38.74 16.37 -5.21 -0.09 -38.82 15 20 H 0.30 13.20 8.30 -92.70 -0.77 12.43 15 21 H 0.20 9.59 6.18 -2.91 -0.02 9.57 15 22 H 0.13 3.27 6.73 -2.39 -0.02 3.26 15 23 H 0.09 2.75 7.58 -2.39 -0.02 2.73 15 24 H 0.12 2.41 8.14 -2.38 -0.02 2.39 15 25 H 0.12 2.31 8.14 -2.38 -0.02 2.29 15 26 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 27 H 0.41 11.51 6.89 -92.71 -0.64 10.88 15 28 H 0.40 14.74 8.36 -92.71 -0.78 13.96 15 Total: -1.00 -66.50 246.61 3.23 -63.26 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -0.20 Total: 39.51 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 4.77 Total: 15.73 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -3.28 Total: -119.34 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.09 Total: -38.82 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.67 kcal Total: -66.50 3.23 -63.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244769.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.397 kcal (2) G-P(sol) polarization free energy of solvation -66.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds