Wall clock time and date at job start Mon Mar 30 2020 02:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 120.00106 * 2 1 4 4 N 1.34778 * 119.99796 * 180.02562 * 2 1 3 5 5 C 1.46649 * 126.43764 * 0.02562 * 4 2 1 6 6 C 1.50648 * 107.77559 * 179.97438 * 5 4 2 7 7 C 1.35713 * 144.10057 * 180.02562 * 6 5 4 8 8 O 1.34269 * 109.18286 * 180.21852 * 7 6 5 9 9 C 1.35138 * 109.37046 * 359.59153 * 8 7 6 10 10 C 1.39746 * 126.24591 * 180.13680 * 9 8 7 11 11 H 1.07994 * 120.00455 * 180.31187 * 10 9 8 12 12 C 1.40164 * 120.00003 * 0.30986 * 10 9 8 13 13 N 1.30806 * 120.00001 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00189 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47094 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47105 * 120.00321 * 14 12 10 17 17 H 1.48503 * 109.47382 * 240.00306 * 14 12 10 18 18 C 1.39413 * 107.50925 * 0.39985 * 9 8 7 19 19 C 1.46681 * 126.43514 * 179.97438 * 4 2 1 20 20 H 1.08997 * 109.47022 * 269.99602 * 1 2 3 21 21 H 1.09003 * 109.46885 * 29.99512 * 1 2 3 22 22 H 1.08994 * 109.47394 * 149.99293 * 1 2 3 23 23 H 1.09006 * 109.80358 * 60.40886 * 5 4 2 24 24 H 1.08997 * 109.84705 * 299.57288 * 5 4 2 25 25 H 1.08002 * 125.40575 * 359.94393 * 7 6 5 26 26 H 0.96999 * 120.00463 * 179.97438 * 13 12 10 27 27 H 1.08999 * 109.80481 * 299.57507 * 19 4 2 28 28 H 1.08992 * 109.80829 * 60.39870 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5946 -2.5114 -0.0017 6 6 2.7257 -3.5065 -0.0025 7 6 3.0254 -4.8301 -0.0040 8 8 4.3597 -4.9803 0.0010 9 6 4.9477 -3.7636 -0.0033 10 6 6.3220 -3.5101 -0.0028 11 1 6.6834 -2.4924 -0.0015 12 6 7.2314 -4.5766 -0.0042 13 7 6.7937 -5.8093 -0.0063 14 14 9.0684 -4.2378 -0.0043 15 1 9.3012 -2.7712 -0.0023 16 1 9.6825 -4.8378 1.2074 17 1 9.6819 -4.8352 -1.2177 18 6 3.9332 -2.8074 -0.0021 19 6 3.6384 -1.3317 -0.0011 20 1 -0.3633 -0.0001 1.0276 21 1 -0.3633 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5139 23 1 0.9831 -2.6469 -0.8938 24 1 0.9825 -2.6490 0.8897 25 1 2.3051 -5.6348 -0.0043 26 1 7.4230 -6.5475 -0.0076 27 1 4.0618 -0.8699 -0.8931 28 1 4.0626 -0.8700 0.8904 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261253398.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:21 Heat of formation + Delta-G solvation = -22.012098 kcal Electronic energy + Delta-G solvation = -14580.531485 eV Core-core repulsion = 11984.109103 eV Total energy + Delta-G solvation = -2596.422382 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85581 -39.10111 -36.23273 -33.76852 -31.51561 -29.74637 -29.33854 -27.09670 -25.17268 -23.98040 -19.70392 -19.08827 -18.99049 -17.12335 -16.10179 -15.73607 -15.37064 -14.98834 -14.52878 -14.26947 -13.32583 -13.25378 -12.62661 -12.44808 -12.29525 -11.87572 -11.80651 -11.42654 -11.40998 -11.08645 -10.70994 -10.46764 -9.98221 -9.59176 -9.53642 -8.68369 -7.70045 -7.32938 -6.97105 -4.54851 2.81421 2.94158 2.99797 3.06305 3.37828 3.45313 3.76782 3.80397 4.83365 4.87101 5.05660 5.20524 5.34092 5.48075 5.74084 5.95006 5.99701 6.05453 6.43553 6.53655 6.60162 6.86808 6.93763 7.18401 7.56530 7.84300 7.98399 8.07449 8.41888 8.50508 8.55138 9.08629 10.01933 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045116 B = 0.007542 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.473131 B = 3711.781710 C = 4306.463236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.525 3.475 3 O -0.558 6.558 4 N -0.608 5.608 5 C 0.191 3.809 6 C -0.188 4.188 7 C -0.135 4.135 8 O -0.149 6.149 9 C 0.247 3.753 10 C -0.437 4.437 11 H 0.105 0.895 12 C 0.067 3.933 13 N -0.774 5.774 14 Si 0.924 3.076 15 H -0.257 1.257 16 H -0.271 1.271 17 H -0.270 1.270 18 C -0.408 4.408 19 C 0.221 3.779 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.169 0.831 26 H 0.286 0.714 27 H 0.050 0.950 28 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 1.786 0.033 6.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.315 3.685 3 O -0.438 6.438 4 N -0.341 5.341 5 C 0.068 3.932 6 C -0.190 4.190 7 C -0.201 4.201 8 O -0.045 6.045 9 C 0.194 3.806 10 C -0.466 4.466 11 H 0.123 0.877 12 C -0.154 4.154 13 N -0.399 5.399 14 Si 0.747 3.253 15 H -0.180 1.180 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.411 4.411 19 C 0.099 3.901 20 H 0.109 0.891 21 H 0.108 0.892 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.187 0.813 26 H 0.097 0.903 27 H 0.068 0.932 28 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.111 1.927 0.034 6.407 hybrid contribution 0.567 -0.042 0.008 0.569 sum -5.544 1.885 0.042 5.855 Atomic orbital electron populations 1.21852 0.91807 1.04511 1.04440 1.20265 0.90099 0.81766 0.76414 1.90687 1.70901 1.30594 1.51585 1.48275 1.08695 1.05583 1.71553 1.19370 0.93331 0.80382 1.00079 1.20207 0.95877 0.93906 1.08990 1.22118 0.83851 0.94068 1.20070 1.84604 1.16368 1.29915 1.73649 1.18502 0.91327 0.79255 0.91547 1.18842 0.86973 0.95114 1.45703 0.87684 1.26164 1.02683 0.94410 0.92140 1.69764 1.37875 0.99595 1.32686 0.85979 0.80282 0.80248 0.78752 1.18025 1.19558 1.19552 1.20166 0.93243 0.93643 1.34067 1.18862 0.78354 0.93221 0.99628 0.89095 0.89167 0.90273 0.91846 0.91832 0.81348 0.90342 0.93221 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.92 36.01 0.36 -1.63 15 2 C 0.53 9.49 7.98 -10.98 -0.09 9.40 15 3 O -0.56 -12.18 17.47 5.56 0.10 -12.08 15 4 N -0.61 -11.93 3.34 -176.32 -0.59 -12.52 15 5 C 0.19 3.43 6.17 -5.14 -0.03 3.40 15 6 C -0.19 -4.22 7.01 -105.07 -0.74 -4.96 15 7 C -0.13 -3.09 12.08 29.83 0.36 -2.73 15 8 O -0.15 -4.00 8.98 3.45 0.03 -3.97 15 9 C 0.25 6.70 6.79 -38.58 -0.26 6.43 15 10 C -0.44 -11.48 9.32 -38.30 -0.36 -11.84 15 11 H 0.11 2.62 7.85 -52.49 -0.41 2.21 15 12 C 0.07 1.66 5.50 -17.27 -0.09 1.56 15 13 N -0.77 -19.85 12.01 55.56 0.67 -19.18 15 14 Si 0.92 18.11 29.56 -169.99 -5.03 13.09 15 15 H -0.26 -4.97 7.11 56.52 0.40 -4.56 15 16 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 18 C -0.41 -10.23 7.06 -103.81 -0.73 -10.96 15 19 C 0.22 5.04 6.89 -5.20 -0.04 5.00 15 20 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 22 H 0.08 0.80 7.16 -51.93 -0.37 0.43 15 23 H 0.06 0.98 7.85 -51.93 -0.41 0.58 15 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.17 3.15 8.06 -52.49 -0.42 2.73 15 26 H 0.29 6.55 8.30 -40.82 -0.34 6.21 15 27 H 0.05 1.15 8.14 -51.93 -0.42 0.72 15 28 H 0.05 1.15 8.14 -51.93 -0.42 0.72 15 LS Contribution 251.32 15.07 3.79 3.79 Total: -1.00 -30.63 251.32 -5.51 -36.15 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -2.86 Total: 1.06 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -1.62 Total: -6.32 kcal Atomic # 7 Polarization: -31.78 SS G_CDS: 0.08 Total: -31.70 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.13 Total: -16.06 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.63 -5.51 -36.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253398.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.135 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds