Wall clock time and date at job start Mon Mar 30 2020 02:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 120.00106 * 2 1 4 4 N 1.34778 * 119.99796 * 180.02562 * 2 1 3 5 5 C 1.46649 * 126.43764 * 0.02562 * 4 2 1 6 6 C 1.50648 * 107.77559 * 179.97438 * 5 4 2 7 7 C 1.35713 * 144.10057 * 180.02562 * 6 5 4 8 8 O 1.34269 * 109.18286 * 180.21852 * 7 6 5 9 9 C 1.35138 * 109.37046 * 359.59153 * 8 7 6 10 10 C 1.39746 * 126.24591 * 180.13680 * 9 8 7 11 11 H 1.07994 * 120.00455 * 180.31187 * 10 9 8 12 12 C 1.40164 * 120.00003 * 0.30986 * 10 9 8 13 13 N 1.30806 * 120.00001 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00189 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47094 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47105 * 120.00321 * 14 12 10 17 17 H 1.48503 * 109.47382 * 240.00306 * 14 12 10 18 18 C 1.39413 * 107.50925 * 0.39985 * 9 8 7 19 19 C 1.46681 * 126.43514 * 179.97438 * 4 2 1 20 20 H 1.08997 * 109.47022 * 269.99602 * 1 2 3 21 21 H 1.09003 * 109.46885 * 29.99512 * 1 2 3 22 22 H 1.08994 * 109.47394 * 149.99293 * 1 2 3 23 23 H 1.09006 * 109.80358 * 60.40886 * 5 4 2 24 24 H 1.08997 * 109.84705 * 299.57288 * 5 4 2 25 25 H 1.08002 * 125.40575 * 359.94393 * 7 6 5 26 26 H 0.96999 * 120.00463 * 179.97438 * 13 12 10 27 27 H 1.08999 * 109.80481 * 299.57507 * 19 4 2 28 28 H 1.08992 * 109.80829 * 60.39870 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5946 -2.5114 -0.0017 6 6 2.7257 -3.5065 -0.0025 7 6 3.0254 -4.8301 -0.0040 8 8 4.3597 -4.9803 0.0010 9 6 4.9477 -3.7636 -0.0033 10 6 6.3220 -3.5101 -0.0028 11 1 6.6834 -2.4924 -0.0015 12 6 7.2314 -4.5766 -0.0042 13 7 6.7937 -5.8093 -0.0063 14 14 9.0684 -4.2378 -0.0043 15 1 9.3012 -2.7712 -0.0023 16 1 9.6825 -4.8378 1.2074 17 1 9.6819 -4.8352 -1.2177 18 6 3.9332 -2.8074 -0.0021 19 6 3.6384 -1.3317 -0.0011 20 1 -0.3633 -0.0001 1.0276 21 1 -0.3633 0.8901 -0.5138 22 1 -0.3634 -0.8899 -0.5139 23 1 0.9831 -2.6469 -0.8938 24 1 0.9825 -2.6490 0.8897 25 1 2.3051 -5.6348 -0.0043 26 1 7.4230 -6.5475 -0.0076 27 1 4.0618 -0.8699 -0.8931 28 1 4.0626 -0.8700 0.8904 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261253398.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:20 Heat of formation + Delta-G solvation = -42.587399 kcal Electronic energy + Delta-G solvation = -14581.423697 eV Core-core repulsion = 11984.109103 eV Total energy + Delta-G solvation = -2597.314594 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.70095 -40.64323 -37.87504 -35.65803 -33.16034 -31.43752 -30.80673 -28.72593 -26.80480 -25.79054 -21.51431 -20.90078 -20.48746 -18.90511 -17.65482 -17.26558 -17.13084 -16.57898 -16.21650 -16.05230 -15.01426 -14.73304 -14.23875 -13.84839 -13.66025 -13.31207 -13.19652 -13.01693 -12.99133 -12.78751 -12.57840 -12.12618 -11.71957 -11.37629 -11.04922 -10.41064 -9.39380 -9.23399 -8.81908 -6.50416 1.14021 1.37307 1.54680 1.55445 1.64350 1.96068 2.00379 2.15889 3.02779 3.10629 3.40212 3.77341 4.24638 4.46442 4.53929 4.60971 4.61880 4.68566 4.78266 4.86245 5.03531 5.05685 5.21210 5.35483 5.69968 5.94335 6.18650 6.49724 6.59612 6.65271 7.05800 7.17337 8.20378 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045116 B = 0.007542 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.473131 B = 3711.781710 C = 4306.463236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.518 3.482 3 O -0.605 6.605 4 N -0.613 5.613 5 C 0.195 3.805 6 C -0.189 4.189 7 C -0.145 4.145 8 O -0.176 6.176 9 C 0.207 3.793 10 C -0.473 4.473 11 H 0.103 0.897 12 C 0.026 3.974 13 N -0.809 5.809 14 Si 1.001 2.999 15 H -0.256 1.256 16 H -0.260 1.260 17 H -0.259 1.259 18 C -0.437 4.437 19 C 0.226 3.774 20 H 0.116 0.884 21 H 0.104 0.896 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.210 0.790 26 H 0.296 0.704 27 H 0.034 0.966 28 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 1.681 0.058 8.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.311 3.689 3 O -0.487 6.487 4 N -0.346 5.346 5 C 0.073 3.927 6 C -0.190 4.190 7 C -0.210 4.210 8 O -0.074 6.074 9 C 0.154 3.846 10 C -0.501 4.501 11 H 0.120 0.880 12 C -0.191 4.191 13 N -0.435 5.435 14 Si 0.820 3.180 15 H -0.179 1.179 16 H -0.184 1.184 17 H -0.184 1.184 18 C -0.441 4.441 19 C 0.102 3.898 20 H 0.134 0.866 21 H 0.122 0.878 22 H 0.124 0.876 23 H 0.117 0.883 24 H 0.117 0.883 25 H 0.226 0.774 26 H 0.107 0.893 27 H 0.052 0.948 28 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.721 1.808 0.058 7.930 hybrid contribution 0.962 -0.017 0.002 0.962 sum -6.758 1.791 0.060 6.992 Atomic orbital electron populations 1.21909 0.86028 1.06568 1.06655 1.21561 0.92524 0.80316 0.74512 1.90667 1.72437 1.32141 1.53491 1.48449 1.06998 1.07117 1.72024 1.19600 0.91881 0.77804 1.03403 1.20790 0.96791 0.94012 1.07451 1.22990 0.83058 0.95876 1.19051 1.84552 1.18393 1.30267 1.74215 1.18984 0.92452 0.80085 0.93039 1.19144 0.87773 0.95801 1.47423 0.87950 1.27109 1.07484 0.93662 0.90895 1.69810 1.40000 1.00634 1.33040 0.84855 0.73681 0.80066 0.79379 1.17920 1.18385 1.18378 1.20534 0.94274 0.94922 1.34333 1.18622 0.81180 0.91788 0.98190 0.86551 0.87764 0.87585 0.88284 0.88281 0.77358 0.89318 0.94778 0.94758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.92 71.24 0.71 -2.24 15 2 C 0.52 17.68 7.98 87.66 0.70 18.38 15 3 O -0.61 -26.21 17.47 -3.03 -0.05 -26.27 15 4 N -0.61 -23.11 3.34 -830.15 -2.77 -25.88 15 5 C 0.19 6.32 6.17 85.59 0.53 6.85 15 6 C -0.19 -8.26 7.01 -20.15 -0.14 -8.40 15 7 C -0.14 -6.52 12.08 67.23 0.81 -5.71 15 8 O -0.18 -9.74 8.98 -10.58 -0.09 -9.83 15 9 C 0.21 11.69 6.79 22.92 0.16 11.84 15 10 C -0.47 -25.95 9.32 23.10 0.22 -25.73 15 11 H 0.10 5.42 7.85 -2.91 -0.02 5.40 15 12 C 0.03 1.32 5.50 85.31 0.47 1.79 15 13 N -0.81 -42.37 12.01 21.87 0.26 -42.11 15 14 Si 1.00 37.46 29.56 68.60 2.03 39.48 15 15 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 16 H -0.26 -9.18 7.11 99.48 0.71 -8.48 15 17 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 18 C -0.44 -22.48 7.06 -19.34 -0.14 -22.61 15 19 C 0.23 10.55 6.89 85.53 0.59 11.14 15 20 H 0.12 1.75 8.14 -2.39 -0.02 1.73 15 21 H 0.10 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.11 1.52 7.16 -2.39 -0.02 1.50 15 23 H 0.10 2.57 7.85 -2.38 -0.02 2.56 15 24 H 0.10 2.58 8.14 -2.39 -0.02 2.56 15 25 H 0.21 7.30 8.06 -2.91 -0.02 7.27 15 26 H 0.30 13.71 8.30 -92.71 -0.77 12.94 15 27 H 0.03 1.65 8.14 -2.39 -0.02 1.63 15 28 H 0.03 1.66 8.14 -2.39 -0.02 1.64 15 Total: -1.00 -70.40 251.32 4.44 -65.95 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.17 Total: 13.35 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 3.90 Total: -14.70 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -2.51 Total: -67.99 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.15 Total: -36.10 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.48 kcal Total: -70.40 4.44 -65.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253398.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.367 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds