Wall clock time and date at job start Mon Mar 30 2020 03:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00016 * 2 1 4 4 H 1.48501 * 109.47398 * 270.00548 * 3 2 1 5 5 H 1.48508 * 109.47131 * 30.00378 * 3 2 1 6 6 H 1.48500 * 109.47280 * 150.00053 * 3 2 1 7 7 C 1.37881 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99830 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00030 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.85529 * 62.33887 * 9 7 2 11 11 C 1.54623 * 110.97105 * 298.54874 * 9 7 2 12 12 C 1.51286 * 104.19583 * 217.04578 * 11 9 7 13 13 O 1.21293 * 124.94075 * 196.22853 * 12 11 9 14 14 N 1.34423 * 110.11165 * 16.49748 * 12 11 9 15 15 C 1.40157 * 124.34642 * 180.16316 * 14 12 11 16 16 C 1.40418 * 125.97457 * 5.02211 * 15 14 12 17 17 C 1.35237 * 107.86557 * 179.97438 * 16 15 14 18 18 N 1.34969 * 107.86312 * 359.97438 * 17 16 15 19 19 H 0.96999 * 125.97343 * 180.02562 * 18 17 16 20 20 N 1.31220 * 125.97253 * 184.71440 * 15 14 12 21 21 C 1.46753 * 111.30303 * 0.02562 * 14 12 11 22 22 H 0.96996 * 119.99796 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.48720 * 98.37112 * 11 9 7 24 24 H 1.08997 * 110.48721 * 335.72708 * 11 9 7 25 25 H 1.08001 * 126.05954 * 359.97438 * 16 15 14 26 26 H 1.08000 * 126.06323 * 179.97438 * 17 16 15 27 27 H 1.09009 * 110.39322 * 224.25852 * 21 14 12 28 28 H 1.08995 * 110.11824 * 102.33409 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6472 -2.5986 -0.9025 11 6 0.3773 -2.6337 1.2680 12 6 0.4667 -4.1008 1.6262 13 8 -0.2851 -4.6782 2.3829 14 7 1.5041 -4.6700 0.9885 15 6 1.8582 -6.0212 1.1036 16 6 1.1446 -7.0037 1.8086 17 6 1.8101 -8.1737 1.6779 18 7 2.9032 -7.9459 0.9198 19 1 3.5655 -8.6060 0.6619 20 7 2.9116 -6.5904 0.5666 21 6 2.2163 -3.6955 0.1537 22 1 -0.4849 0.8400 0.0004 23 1 -0.6543 -2.3560 1.0519 24 1 0.7779 -2.0191 2.0741 25 1 0.2271 -6.8518 2.3577 26 1 1.5185 -9.1221 2.1046 27 1 2.4429 -4.1251 -0.8222 28 1 3.1345 -3.3785 0.6480 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261254444.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:03 Heat of formation + Delta-G solvation = 43.263646 kcal Electronic energy + Delta-G solvation = -14633.416927 eV Core-core repulsion = 12072.117865 eV Total energy + Delta-G solvation = -2561.299062 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.05556 -39.36707 -35.88407 -33.57521 -31.61149 -29.79182 -29.22449 -26.94975 -24.95570 -21.88848 -21.39800 -19.96789 -18.50742 -17.75016 -16.70794 -16.08650 -15.28296 -14.69439 -14.49828 -14.00297 -13.48211 -13.09240 -12.83929 -12.55525 -12.27880 -12.18321 -11.06042 -10.93013 -10.68074 -10.51028 -10.38805 -10.08298 -9.59491 -9.46967 -8.90528 -8.65970 -8.51456 -7.78351 -6.17384 -4.23116 2.00741 2.73610 2.76493 3.25592 3.33241 3.35760 3.66364 3.71616 4.33349 4.92221 5.15982 5.20599 5.59053 5.73628 5.92646 6.09813 6.15739 6.31730 6.42922 6.71179 6.74798 7.24395 7.31280 7.37880 7.52427 7.55041 7.79405 8.05007 8.17296 8.74376 8.80939 9.43311 10.92372 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055820 B = 0.007100 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.493536 B = 3942.822180 C = 4323.775238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.065 0.935 9 C 0.046 3.954 10 H 0.048 0.952 11 C -0.122 4.122 12 C 0.521 3.479 13 O -0.537 6.537 14 N -0.536 5.536 15 C 0.324 3.676 16 C -0.274 4.274 17 C 0.064 3.936 18 N -0.481 5.481 19 H 0.438 0.562 20 N -0.325 5.325 21 C 0.107 3.893 22 H 0.265 0.735 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.160 0.840 26 H 0.177 0.823 27 H 0.068 0.932 28 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.632 -11.488 1.535 12.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.083 0.917 9 C 0.027 3.973 10 H 0.066 0.934 11 C -0.162 4.162 12 C 0.312 3.688 13 O -0.413 6.413 14 N -0.266 5.266 15 C 0.069 3.931 16 C -0.305 4.305 17 C -0.083 4.083 18 N -0.191 5.191 19 H 0.282 0.718 20 N -0.157 5.157 21 C -0.014 4.014 22 H 0.074 0.926 23 H 0.119 0.881 24 H 0.118 0.882 25 H 0.178 0.822 26 H 0.194 0.806 27 H 0.086 0.914 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.044 -11.462 1.262 12.220 hybrid contribution 0.110 0.339 0.347 0.497 sum 4.153 -11.123 1.609 11.982 Atomic orbital electron populations 1.69944 1.05962 1.27170 1.49107 1.24980 0.94907 0.99333 0.94462 0.86502 0.79829 0.82945 0.78219 1.20550 1.21145 1.19750 1.20947 0.93064 0.89356 1.52530 0.91729 1.19704 0.92150 0.91604 0.93862 0.93353 1.22428 1.04501 0.87357 1.01914 1.22221 0.77613 0.91375 0.77554 1.90576 1.44168 1.70340 1.36193 1.45633 1.30573 1.04274 1.46104 1.19279 0.92608 0.85753 0.95455 1.21576 1.06163 0.90915 1.11867 1.22464 0.89189 1.00017 0.96677 1.45885 1.22131 1.07997 1.43045 0.71820 1.77407 1.21496 0.89162 1.27630 1.22631 0.96779 0.88713 0.93286 0.92573 0.88066 0.88227 0.82224 0.80608 0.91397 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.73 12.40 55.43 0.69 -23.04 15 2 C 0.07 1.71 5.34 -17.82 -0.10 1.62 15 3 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 15 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.52 -13.14 8.43 -34.44 -0.29 -13.43 15 8 H 0.06 1.59 7.66 -52.49 -0.40 1.19 15 9 C 0.05 1.07 3.08 -90.14 -0.28 0.79 15 10 H 0.05 1.19 8.14 -51.93 -0.42 0.77 15 11 C -0.12 -2.78 5.46 -26.74 -0.15 -2.93 15 12 C 0.52 11.60 7.97 -10.86 -0.09 11.52 15 13 O -0.54 -12.61 15.66 5.55 0.09 -12.53 15 14 N -0.54 -11.23 3.14 -113.82 -0.36 -11.59 15 15 C 0.32 6.31 7.76 -154.39 -1.20 5.11 15 16 C -0.27 -4.66 9.92 -39.83 -0.40 -5.05 15 17 C 0.06 0.78 11.98 -17.24 -0.21 0.58 15 18 N -0.48 -6.13 7.35 30.43 0.22 -5.91 15 19 H 0.44 3.71 8.96 -182.62 -1.64 2.07 15 20 N -0.32 -5.77 12.57 31.44 0.40 -5.37 15 21 C 0.11 2.21 6.72 -3.12 -0.02 2.19 15 22 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15 23 H 0.10 2.42 7.98 -51.93 -0.41 2.00 15 24 H 0.10 2.34 7.89 -51.93 -0.41 1.93 15 25 H 0.16 2.86 6.60 -52.49 -0.35 2.51 15 26 H 0.18 1.29 8.06 -52.49 -0.42 0.87 15 27 H 0.07 1.33 8.14 -51.92 -0.42 0.91 15 28 H 0.07 1.47 7.78 -51.93 -0.40 1.06 15 LS Contribution 248.16 15.07 3.74 3.74 Total: -1.00 -29.98 248.16 -6.98 -36.96 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.02 Total: 2.30 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -2.72 Total: 0.40 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.95 Total: -45.92 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -29.98 -6.98 -36.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254444.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.221 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds