Wall clock time and date at job start Mon Mar 30 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00016 * 2 1 4 4 H 1.48501 * 109.47398 * 270.00548 * 3 2 1 5 5 H 1.48508 * 109.47131 * 30.00378 * 3 2 1 6 6 H 1.48500 * 109.47280 * 150.00053 * 3 2 1 7 7 C 1.37881 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99830 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00030 * 359.97438 * 7 2 1 10 10 H 1.09006 * 110.85529 * 62.33887 * 9 7 2 11 11 C 1.54623 * 110.97105 * 298.54874 * 9 7 2 12 12 C 1.51286 * 104.19583 * 217.04578 * 11 9 7 13 13 O 1.21293 * 124.94075 * 196.22853 * 12 11 9 14 14 N 1.34423 * 110.11165 * 16.49748 * 12 11 9 15 15 C 1.40157 * 124.34642 * 180.16316 * 14 12 11 16 16 C 1.40418 * 125.97457 * 5.02211 * 15 14 12 17 17 C 1.35237 * 107.86557 * 179.97438 * 16 15 14 18 18 N 1.34969 * 107.86312 * 359.97438 * 17 16 15 19 19 H 0.96999 * 125.97343 * 180.02562 * 18 17 16 20 20 N 1.31220 * 125.97253 * 184.71440 * 15 14 12 21 21 C 1.46753 * 111.30303 * 0.02562 * 14 12 11 22 22 H 0.96996 * 119.99796 * 359.97438 * 1 2 3 23 23 H 1.09000 * 110.48720 * 98.37112 * 11 9 7 24 24 H 1.08997 * 110.48721 * 335.72708 * 11 9 7 25 25 H 1.08001 * 126.05954 * 359.97438 * 16 15 14 26 26 H 1.08000 * 126.06323 * 179.97438 * 17 16 15 27 27 H 1.09009 * 110.39322 * 224.25852 * 21 14 12 28 28 H 1.08995 * 110.11824 * 102.33409 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6472 -2.5986 -0.9025 11 6 0.3773 -2.6337 1.2680 12 6 0.4667 -4.1008 1.6262 13 8 -0.2851 -4.6782 2.3829 14 7 1.5041 -4.6700 0.9885 15 6 1.8582 -6.0212 1.1036 16 6 1.1446 -7.0037 1.8086 17 6 1.8101 -8.1737 1.6779 18 7 2.9032 -7.9459 0.9198 19 1 3.5655 -8.6060 0.6619 20 7 2.9116 -6.5904 0.5666 21 6 2.2163 -3.6955 0.1537 22 1 -0.4849 0.8400 0.0004 23 1 -0.6543 -2.3560 1.0519 24 1 0.7779 -2.0191 2.0741 25 1 0.2271 -6.8518 2.3577 26 1 1.5185 -9.1221 2.1046 27 1 2.4429 -4.1251 -0.8222 28 1 3.1345 -3.3785 0.6480 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254444.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:02 Heat of formation + Delta-G solvation = 23.753724 kcal Electronic energy + Delta-G solvation = -14634.262941 eV Core-core repulsion = 12072.117865 eV Total energy + Delta-G solvation = -2562.145076 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.38845 -40.98992 -37.66492 -35.35213 -33.28331 -31.04591 -30.72722 -28.76249 -26.80364 -23.43907 -22.81298 -21.57160 -20.02968 -19.02778 -18.55471 -17.63592 -17.02368 -16.47874 -16.13373 -15.45876 -14.99395 -14.66193 -14.40114 -14.16707 -13.92499 -13.84226 -12.91603 -12.74992 -12.52956 -12.17685 -11.84222 -11.60665 -11.43078 -11.27707 -10.78504 -10.45889 -9.88459 -9.24267 -8.14903 -6.26466 0.73827 1.33904 1.40585 1.48947 1.51288 1.60372 2.10649 2.43721 2.49774 3.17685 3.53954 3.92698 4.09205 4.20933 4.38243 4.56115 4.76172 4.77890 4.83062 4.88132 5.21300 5.39620 5.59103 5.74748 5.81496 5.86551 6.20071 6.53624 6.72730 6.80600 7.05735 7.43091 8.94744 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055820 B = 0.007100 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.493536 B = 3942.822180 C = 4323.775238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.043 3.957 10 H 0.029 0.971 11 C -0.111 4.111 12 C 0.523 3.477 13 O -0.554 6.554 14 N -0.536 5.536 15 C 0.290 3.710 16 C -0.316 4.316 17 C 0.110 3.890 18 N -0.456 5.456 19 H 0.460 0.540 20 N -0.349 5.349 21 C 0.120 3.880 22 H 0.265 0.735 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.144 0.856 26 H 0.237 0.763 27 H 0.078 0.922 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.085 -13.223 1.665 14.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.180 4.180 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.024 3.976 10 H 0.047 0.953 11 C -0.152 4.152 12 C 0.313 3.687 13 O -0.431 6.431 14 N -0.265 5.265 15 C 0.037 3.963 16 C -0.347 4.347 17 C -0.039 4.039 18 N -0.169 5.169 19 H 0.308 0.692 20 N -0.181 5.181 21 C -0.001 4.001 22 H 0.074 0.926 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.162 0.838 26 H 0.253 0.747 27 H 0.096 0.904 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.550 -13.227 1.365 14.409 hybrid contribution -0.297 0.706 0.291 0.820 sum 5.253 -12.521 1.656 13.679 Atomic orbital electron populations 1.70059 1.07267 1.27836 1.50052 1.25720 0.95612 1.02446 0.94205 0.85524 0.78712 0.79029 0.78203 1.20162 1.21267 1.19040 1.21255 0.93453 0.90197 1.52100 0.91273 1.19603 0.92518 0.92411 0.93066 0.95294 1.22191 1.03347 0.88175 1.01454 1.21912 0.78067 0.90979 0.77715 1.90555 1.44958 1.70526 1.37100 1.45429 1.29972 1.05493 1.45567 1.19501 0.94187 0.85152 0.97490 1.21653 1.06957 0.92341 1.13745 1.23165 0.86772 1.00487 0.93456 1.45943 1.22552 1.06726 1.41660 0.69175 1.77300 1.21179 0.91570 1.28081 1.22418 0.95921 0.87832 0.93914 0.92632 0.89729 0.89156 0.83797 0.74686 0.90358 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.93 12.40 21.45 0.27 -49.67 15 2 C 0.02 1.07 5.34 84.65 0.45 1.52 15 3 Si 0.96 41.12 29.54 68.60 2.03 43.15 15 4 H -0.28 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 15 6 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 7 C -0.53 -27.03 8.43 25.60 0.22 -26.81 15 8 H 0.07 3.38 7.66 -2.91 -0.02 3.36 15 9 C 0.04 2.05 3.08 -10.48 -0.03 2.02 15 10 H 0.03 1.48 8.14 -2.38 -0.02 1.46 15 11 C -0.11 -5.26 5.46 30.59 0.17 -5.10 15 12 C 0.52 23.86 7.97 87.90 0.70 24.56 15 13 O -0.55 -26.65 15.66 -3.07 -0.05 -26.69 15 14 N -0.54 -22.63 3.14 -632.60 -1.99 -24.61 15 15 C 0.29 11.04 7.76 133.33 1.03 12.08 15 16 C -0.32 -10.25 9.92 22.11 0.22 -10.03 15 17 C 0.11 2.24 11.98 83.52 1.00 3.24 15 18 N -0.46 -9.88 7.35 -57.63 -0.42 -10.30 15 19 H 0.46 5.66 8.96 -213.34 -1.91 3.75 15 20 N -0.35 -11.70 12.57 -54.44 -0.68 -12.38 15 21 C 0.12 4.99 6.72 86.84 0.58 5.58 15 22 H 0.26 13.83 8.31 -92.71 -0.77 13.06 15 23 H 0.08 4.24 7.98 -2.39 -0.02 4.22 15 24 H 0.09 4.40 7.89 -2.39 -0.02 4.38 15 25 H 0.14 5.11 6.60 -2.91 -0.02 5.09 15 26 H 0.24 1.88 8.06 -2.91 -0.02 1.85 15 27 H 0.08 3.06 8.14 -2.38 -0.02 3.04 15 28 H 0.07 3.04 7.78 -2.39 -0.02 3.02 15 Total: -1.00 -65.75 248.16 2.77 -62.98 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -0.72 Total: 10.46 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 4.34 Total: 7.06 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -2.83 Total: -96.96 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -65.75 2.77 -62.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254444.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.733 kcal (2) G-P(sol) polarization free energy of solvation -65.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds