Wall clock time and date at job start Mon Mar 30 2020 03:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00206 * 2 1 4 4 H 1.48508 * 109.46828 * 239.99933 * 3 2 1 5 5 H 1.48496 * 109.47174 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47256 * 119.99973 * 3 2 1 7 7 C 1.37873 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00518 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99825 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.85475 * 303.78197 * 9 7 2 11 11 C 1.54624 * 111.00364 * 67.60494 * 9 7 2 12 12 C 1.51281 * 104.20087 * 142.92945 * 11 9 7 13 13 O 1.21284 * 124.94239 * 164.01181 * 12 11 9 14 14 N 1.34424 * 110.11017 * 343.74403 * 12 11 9 15 15 C 1.40159 * 124.34421 * 179.56994 * 14 12 11 16 16 C 1.40410 * 125.97713 * 5.02921 * 15 14 12 17 17 C 1.35232 * 107.86828 * 179.97438 * 16 15 14 18 18 N 1.34968 * 107.86336 * 359.97438 * 17 16 15 19 19 H 0.97002 * 125.97586 * 180.02562 * 18 17 16 20 20 N 1.31224 * 125.96819 * 184.71244 * 15 14 12 21 21 C 1.46764 * 111.30306 * 359.59326 * 14 12 11 22 22 H 0.97005 * 119.99722 * 0.02562 * 1 2 3 23 23 H 1.09000 * 110.48926 * 24.24758 * 11 9 7 24 24 H 1.09001 * 110.48194 * 261.61114 * 11 9 7 25 25 H 1.08004 * 126.05894 * 359.95858 * 16 15 14 26 26 H 1.07999 * 126.06726 * 179.97438 * 17 16 15 27 27 H 1.09002 * 110.24057 * 136.01578 * 21 14 12 28 28 H 1.08999 * 110.24100 * 257.92847 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 0.5660 -2.5518 0.8469 11 6 0.4980 -2.7044 -1.3343 12 6 0.6172 -4.1883 -1.6033 13 8 -0.0597 -4.8070 -2.3971 14 7 1.5865 -4.7202 -0.8388 15 6 1.9425 -6.0758 -0.8429 16 6 1.4264 -7.0615 -1.6993 17 6 2.0216 -8.2351 -1.3876 18 7 2.8827 -8.0061 -0.3738 19 1 3.4481 -8.6680 0.0541 20 7 2.8207 -6.6445 -0.0508 21 6 2.2237 -3.6992 0.0011 22 1 -0.4850 0.8401 -0.0004 23 1 0.9726 -2.1328 -2.1319 24 1 -0.5486 -2.4185 -1.2298 25 1 0.6852 -6.9094 -2.4701 26 1 1.8402 -9.1867 -1.8651 27 1 2.3582 -4.0753 1.0153 28 1 3.1846 -3.4078 -0.4231 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261254445.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:05 Heat of formation + Delta-G solvation = 23.476452 kcal Electronic energy + Delta-G solvation = -14619.604513 eV Core-core repulsion = 12057.447414 eV Total energy + Delta-G solvation = -2562.157099 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.39007 -40.99167 -37.66528 -35.33267 -33.31001 -31.04970 -30.73655 -28.75736 -26.80282 -23.43879 -22.80659 -21.58591 -20.02809 -19.02253 -18.59768 -17.62033 -16.97690 -16.50414 -16.17300 -15.43220 -14.99508 -14.68115 -14.38269 -14.17725 -13.97241 -13.79917 -12.92525 -12.70964 -12.52770 -12.20456 -11.82260 -11.66175 -11.44018 -11.24869 -10.80604 -10.45452 -9.88500 -9.24371 -8.15050 -6.26543 0.73662 1.33535 1.40583 1.50784 1.51402 1.58808 2.10838 2.43558 2.49746 3.17539 3.53284 3.92770 4.08905 4.21320 4.37906 4.55568 4.76202 4.77825 4.83167 4.86597 5.20703 5.37311 5.58627 5.74392 5.81279 5.86104 6.20266 6.53540 6.72582 6.81101 7.05407 7.43043 8.94813 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.055526 B = 0.007048 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.143301 B = 3971.830753 C = 4336.693945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.021 3.979 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.269 1.269 7 C -0.532 4.532 8 H 0.070 0.930 9 C 0.044 3.956 10 H 0.030 0.970 11 C -0.117 4.117 12 C 0.524 3.476 13 O -0.554 6.554 14 N -0.536 5.536 15 C 0.290 3.710 16 C -0.316 4.316 17 C 0.110 3.890 18 N -0.457 5.457 19 H 0.460 0.540 20 N -0.349 5.349 21 C 0.120 3.880 22 H 0.265 0.735 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.145 0.855 26 H 0.237 0.763 27 H 0.077 0.923 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.470 -13.214 -1.139 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.180 4.180 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.570 4.570 8 H 0.088 0.912 9 C 0.025 3.975 10 H 0.048 0.952 11 C -0.158 4.158 12 C 0.314 3.686 13 O -0.431 6.431 14 N -0.265 5.265 15 C 0.037 3.963 16 C -0.347 4.347 17 C -0.039 4.039 18 N -0.169 5.169 19 H 0.308 0.692 20 N -0.182 5.182 21 C -0.001 4.001 22 H 0.074 0.926 23 H 0.112 0.888 24 H 0.101 0.899 25 H 0.162 0.838 26 H 0.253 0.747 27 H 0.096 0.904 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.761 -13.237 -0.621 14.449 hybrid contribution -0.217 0.690 -0.388 0.821 sum 5.544 -12.546 -1.009 13.754 Atomic orbital electron populations 1.70055 1.07337 1.27924 1.49999 1.25728 0.95588 1.02492 0.94159 0.85583 0.78275 0.78657 0.78988 1.19516 1.21376 1.19441 1.21228 0.93436 0.90179 1.52128 0.91234 1.19586 0.93015 0.92293 0.92608 0.95224 1.22280 1.03390 0.88069 1.02019 1.21856 0.77248 0.91459 0.78006 1.90555 1.47149 1.68730 1.36677 1.45432 1.35287 1.04386 1.41365 1.19500 0.95857 0.85114 0.95855 1.21653 1.12023 0.92339 1.08658 1.23166 0.90172 1.00537 0.90015 1.45945 1.35342 1.06233 1.29361 0.69178 1.77301 1.24558 0.91184 1.25127 1.22434 0.97090 0.86639 0.93985 0.92631 0.88826 0.89865 0.83756 0.74684 0.90439 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.22 12.84 21.45 0.28 -49.94 15 2 C 0.02 1.08 5.37 84.65 0.45 1.53 15 3 Si 0.96 41.07 29.54 68.60 2.03 43.09 15 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 15 5 H -0.29 -12.31 7.11 99.48 0.71 -11.60 15 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 7 C -0.53 -26.97 8.39 25.60 0.21 -26.76 15 8 H 0.07 3.38 7.60 -2.91 -0.02 3.36 15 9 C 0.04 2.10 2.96 -10.48 -0.03 2.07 15 10 H 0.03 1.53 8.14 -2.39 -0.02 1.51 15 11 C -0.12 -5.49 5.81 30.59 0.18 -5.31 15 12 C 0.52 23.75 7.97 87.90 0.70 24.46 15 13 O -0.55 -26.45 15.65 -3.04 -0.05 -26.50 15 14 N -0.54 -22.56 3.14 -632.61 -1.99 -24.55 15 15 C 0.29 11.02 7.76 133.32 1.03 12.06 15 16 C -0.32 -10.20 9.92 22.11 0.22 -9.98 15 17 C 0.11 2.23 11.98 83.52 1.00 3.23 15 18 N -0.46 -9.87 7.35 -57.63 -0.42 -10.30 15 19 H 0.46 5.67 8.96 -213.33 -1.91 3.75 15 20 N -0.35 -11.71 12.57 -54.45 -0.68 -12.40 15 21 C 0.12 4.96 6.72 86.83 0.58 5.55 15 22 H 0.26 13.92 8.31 -92.70 -0.77 13.15 15 23 H 0.09 4.45 7.89 -2.39 -0.02 4.43 15 24 H 0.08 4.13 8.14 -2.39 -0.02 4.11 15 25 H 0.14 5.10 6.59 -2.91 -0.02 5.08 15 26 H 0.24 1.86 8.06 -2.91 -0.02 1.84 15 27 H 0.08 3.06 8.14 -2.39 -0.02 3.04 15 28 H 0.08 3.07 7.75 -2.39 -0.02 3.05 15 Total: -1.00 -65.85 248.91 2.79 -63.06 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -0.72 Total: 10.69 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 4.36 Total: 6.85 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -2.82 Total: -97.18 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -65.85 2.79 -63.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261254445.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.532 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds